A bipartite graph matching framework for finding correspondences between structural elements in two proteins
暂无分享,去创建一个
F. Makedon | J. Ford | Yuhang Wang | Y. Wang | H. Huang | Heng Huang
[1] H. Kuhn. The Hungarian method for the assignment problem , 1955 .
[2] S. B. Needleman,et al. A general method applicable to the search for similarities in the amino acid sequence of two proteins. , 1970, Journal of molecular biology.
[3] M G Rossmann,et al. Comparison of super-secondary structures in proteins. , 1973, Journal of molecular biology.
[4] P Argos,et al. Exploring structural homology of proteins. , 1976, Journal of molecular biology.
[5] G J Williams,et al. The Protein Data Bank: a computer-based archival file for macromolecular structures. , 1978, Archives of biochemistry and biophysics.
[6] G J Williams,et al. The Protein Data Bank: a computer-based archival file for macromolecular structures. , 1978, Archives of biochemistry and biophysics.
[7] K. S. Arun,et al. Least-Squares Fitting of Two 3-D Point Sets , 1987, IEEE Transactions on Pattern Analysis and Machine Intelligence.
[8] D. Labie,et al. Molecular Evolution , 1991, Nature.
[9] H. Wolfson,et al. Efficient detection of three-dimensional structural motifs in biological macromolecules by computer vision techniques. , 1991, Proceedings of the National Academy of Sciences of the United States of America.
[10] Paul J. Besl,et al. A Method for Registration of 3-D Shapes , 1992, IEEE Trans. Pattern Anal. Mach. Intell..
[11] David S. Johnson,et al. Network Flows and Matching: First DIMACS Implementation Challenge , 1993 .
[12] C. Sander,et al. Protein structure comparison by alignment of distance matrices. , 1993, Journal of molecular biology.
[13] P. Willett,et al. A graph-theoretic approach to the identification of three-dimensional patterns of amino acid side-chains in protein structures. , 1994, Journal of molecular biology.
[14] S. Bryant,et al. Threading a database of protein cores , 1995, Proteins.
[15] Kurt Mehlhorn,et al. LEDA: a platform for combinatorial and geometric computing , 1997, CACM.
[16] Chris Sander,et al. 3-D Lookup: Fast Protein Structure Database Searches at 90% Reliability , 1995, ISMB.
[17] J F Gibrat,et al. Surprising similarities in structure comparison. , 1996, Current opinion in structural biology.
[18] M J Sippl,et al. Optimum superimposition of protein structures: ambiguities and implications. , 1996, Folding & design.
[19] Allen R. Hanson,et al. Maximum-weight bipartite matching technique and its application in image feature matching , 1996, Other Conferences.
[20] Douglas L. Brutlag,et al. Hierarchical Protein Structure Superposition Using Both Secondary Structure and Atomic Representations , 1997, ISMB.
[21] M Levitt,et al. Comprehensive assessment of automatic structural alignment against a manual standard, the scop classification of proteins , 1998, Protein science : a publication of the Protein Society.
[22] T. N. Bhat,et al. The Protein Data Bank , 2000, Nucleic Acids Res..
[23] William R. Taylor,et al. Structure Comparison and Structure Patterns , 2000, J. Comput. Biol..
[24] P. Koehl,et al. Protein structure similarities. , 2001, Current opinion in structural biology.
[25] R Nussinov,et al. Automated multiple structure alignment and detection of a common substructural motif , 2001, Proteins.
[26] John D Westbrook,et al. The PDB format, mmCIF, and other data formats. , 2003, Methods of biochemical analysis.
[27] Fillia Makedon,et al. R-Histogram: quantitative representation of spatial relations for similarity-based image retrieval , 2003, MULTIMEDIA '03.
[28] Mattias Ohlsson,et al. Matching protein structures with fuzzy alignments , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[29] John D. Westbrook,et al. The PDB Format, mmCIF Formats, and Other Data Formats , 2005 .
[30] F. Eisenmenger,et al. A fast unbiased comparison of protein structures by means of the Needleman-Wunsch algorithm , 1991, Journal of Molecular Evolution.