Deep transfer learning-based automated detection of COVID-19 from lung CT scan slices

Lung abnormality is one of the common diseases in humans of all age group and this disease may arise due to various reasons. Recently, the lung infection due to SARS-CoV-2 has affected a larger human community globally, and due to its rapidity, the World-Health-Organisation (WHO) declared it as pandemic disease. The COVID-19 disease has adverse effects on the respiratory system, and the infection severity can be detected using a chosen imaging modality. In the proposed research work; the COVID-19 is detected using transfer learning from CT scan images decomposed to three-level using stationary wavelet. A three-phase detection model is proposed to improve the detection accuracy and the procedures are as follows; Phase1- data augmentation using stationary wavelets, Phase2- COVID-19 detection using pre-trained CNN model and Phase3- abnormality localization in CT scan images. This work has considered the well known pre-trained architectures, such as ResNet18, ResNet50, ResNet101, and SqueezeNet for the experimental evaluation. In this work, 70% of images are considered to train the network and 30% images are considered to validate the network. The performance of the considered architectures is evaluated by computing the common performance measures. The result of the experimental evaluation confirms that the ResNet18 pre-trained transfer learning-based model offered better classification accuracy (training = 99.82%, validation = 97.32%, and testing = 99.4%) on the considered image dataset compared with the alternatives.

[1]  Nour Eldeen M. Khalifa,et al.  Detection of Coronavirus (COVID-19) Associated Pneumonia based on Generative Adversarial Networks and a Fine-Tuned Deep Transfer Learning Model using Chest X-ray Dataset , 2020, AISI.

[2]  K. C. Santosh,et al.  AI-Driven Tools for Coronavirus Outbreak: Need of Active Learning and Cross-Population Train/Test Models on Multitudinal/Multimodal Data , 2020, Journal of Medical Systems.

[3]  Tsuyoshi Murata,et al.  {m , 1934, ACML.

[4]  Ali Narin,et al.  Automatic detection of coronavirus disease (COVID-19) using X-ray images and deep convolutional neural networks , 2020, Pattern Analysis and Applications.

[5]  Ronald M. Summers,et al.  ChestX-ray: Hospital-Scale Chest X-ray Database and Benchmarks on Weakly Supervised Classification and Localization of Common Thorax Diseases , 2019, Deep Learning and Convolutional Neural Networks for Medical Imaging and Clinical Informatics.

[6]  Nour Eldeen M. Khalifa,et al.  A deep transfer learning model with classical data augmentation and CGAN to detect COVID-19 from chest CT radiography digital images , 2020, Neural computing & applications.

[7]  Umapada Pal,et al.  Truncated inception net: COVID-19 outbreak screening using chest X-rays , 2020, Physical and Engineering Sciences in Medicine.

[8]  Joseph Paul Cohen,et al.  COVID-19 Image Data Collection , 2020, ArXiv.

[9]  B. Song,et al.  Chest CT manifestations of new coronavirus disease 2019 (COVID-19): a pictorial review , 2020, European Radiology.

[10]  M. Rieder,et al.  Preliminary support for a "dry swab, extraction free" protocol for SARS-CoV-2 testing via RT-qPCR. , 2020, bioRxiv : the preprint server for biology.

[11]  Jian Sun,et al.  Deep Residual Learning for Image Recognition , 2015, 2016 IEEE Conference on Computer Vision and Pattern Recognition (CVPR).

[12]  Hedayatollah Zaghi,et al.  Respiratory Medicine , 1987, The Yale Journal of Biology and Medicine.

[13]  Ioannis D. Apostolopoulos,et al.  Covid-19: automatic detection from X-ray images utilizing transfer learning with convolutional neural networks , 2020, Physical and Engineering Sciences in Medicine.

[14]  Vaishali,et al.  Classification of COVID-19 patients from chest CT images using multi-objective differential evolution–based convolutional neural networks , 2020, European Journal of Clinical Microbiology & Infectious Diseases.

[15]  Andrew Zisserman,et al.  Very Deep Convolutional Networks for Large-Scale Image Recognition , 2014, ICLR.

[16]  Aaas News,et al.  Book Reviews , 1893, Buffalo Medical and Surgical Journal.

[17]  Z. Fayad,et al.  Chest CT Findings in Coronavirus Disease-19 (COVID-19): Relationship to Duration of Infection , 2020, Radiology.

[18]  Shuai Guo,et al.  Sewer damage detection from imbalanced CCTV inspection data using deep convolutional neural networks with hierarchical classification , 2019, Automation in Construction.

[19]  Enrique Herrera-Viedma,et al.  Composite Monte Carlo decision making under high uncertainty of novel coronavirus epidemic using hybridized deep learning and fuzzy rule induction☆ , 2020, Applied Soft Computing.

[20]  U. Rajendra Acharya,et al.  Automated detection of COVID-19 cases using deep neural networks with X-ray images , 2020, Computers in Biology and Medicine.

[21]  Hervé Carfantan,et al.  Time-invariant orthonormal wavelet representations , 1996, IEEE Trans. Signal Process..

[22]  S. Shumak,et al.  Davidson's Principles and practice of medicine , 1988, The Ulster Medical Journal.

[23]  P. Cochat,et al.  Et al , 2008, Archives de pediatrie : organe officiel de la Societe francaise de pediatrie.

[24]  N. Sri Madhava Raja,et al.  Harmony-Search and Otsu based System for Coronavirus Disease (COVID-19) Detection using Lung CT Scan Images , 2020, ArXiv.

[25]  Yifan Yu,et al.  CheXpert: A Large Chest Radiograph Dataset with Uncertainty Labels and Expert Comparison , 2019, AAAI.

[26]  P. Eng Approach to the Patient with Respiratory Disease , 2004 .

[27]  Q. Tao,et al.  Correlation of Chest CT and RT-PCR Testing in Coronavirus Disease 2019 (COVID-19) in China: A Report of 1014 Cases , 2020, Radiology.

[28]  Chunhua Shen,et al.  COVID-19 Screening on Chest X-ray Images Using Deep Learning based Anomaly Detection , 2020, ArXiv.

[29]  B. Silverman,et al.  The Stationary Wavelet Transform and some Statistical Applications , 1995 .

[30]  Hayit Greenspan,et al.  Rapid AI Development Cycle for the Coronavirus (COVID-19) Pandemic: Initial Results for Automated Detection & Patient Monitoring using Deep Learning CT Image Analysis , 2020, ArXiv.

[31]  Milan Sonka,et al.  Deep-COVID: Predicting COVID-19 from chest X-ray images using deep transfer learning , 2020, Medical Image Analysis.

[32]  Geoffrey E. Hinton,et al.  ImageNet classification with deep convolutional neural networks , 2012, Commun. ACM.

[33]  Nilanjan Dey,et al.  Finding an Accurate Early Forecasting Model from Small Dataset: A Case of 2019-nCoV Novel Coronavirus Outbreak , 2020, Int. J. Interact. Multim. Artif. Intell..

[34]  Lawrence O. Hall,et al.  Finding Covid-19 from Chest X-rays using Deep Learning on a Small Dataset , 2020, ArXiv.

[35]  Ming-Ming Cheng,et al.  JCS: An Explainable COVID-19 Diagnosis System by Joint Classification and Segmentation , 2020, IEEE Transactions on Image Processing.

[36]  P. Xie,et al.  COVID-CT-Dataset: A CT Scan Dataset about COVID-19 , 2020, ArXiv.