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[1] Devin Greene,et al. The peaks and geometry of fitness landscapes. , 2013, Journal of theoretical biology.
[2] Alden H. Wright,et al. The computational complexity of N-K fitness functions , 2000, IEEE Trans. Evol. Comput..
[3] Elliott Sober,et al. Adaptationism and Optimality , 2001 .
[4] S. Tonegawa,et al. Somatic generation of antibody diversity. , 1976, Nature.
[5] Marcelo Kallmann,et al. Designing Antibiotic Cycling Strategies by Determining and Understanding Local Adaptive Landscapes , 2013, PloS one.
[6] R. Watson,et al. PERSPECTIVE: SIGN EPISTASIS AND GENETIC COSTRAINT ON EVOLUTIONARY TRAJECTORIES , 2005, Evolution; international journal of organic evolution.
[7] H. A. Orr,et al. The genetic theory of adaptation: a brief history , 2005, Nature Reviews Genetics.
[8] H. Wilf,et al. There’s plenty of time for evolution , 2010, Proceedings of the National Academy of Sciences.
[9] Ming Li,et al. Average Case Complexity Under the Universal Distribution Equals Worst-Case Complexity , 1992, Inf. Process. Lett..
[10] Adi Livnat,et al. A mixability theory for the role of sex in evolution , 2008, Proceedings of the National Academy of Sciences.
[11] Krishnendu Chatterjee,et al. The Time Scale of Evolutionary Innovation , 2014, PLoS Comput. Biol..
[12] Joshua R. Nahum,et al. Sustained fitness gains and variability in fitness trajectories in the long-term evolution experiment with Escherichia coli , 2015, bioRxiv.
[13] Mihalis Yannakakis,et al. Simple Local Search Problems That are Hard to Solve , 1991, SIAM J. Comput..
[14] Stuart A. Kauffman,et al. The origins of order , 1993 .
[15] Sergey Kryazhimskiy,et al. The dynamics of adaptation on correlated fitness landscapes , 2009, Proceedings of the National Academy of Sciences.
[16] Uri Zwick,et al. Subexponential lower bounds for randomized pivoting rules for the simplex algorithm , 2011, STOC '11.
[17] Daniel A. Levinthal. Adaptation on rugged landscapes , 1997 .
[18] J. Gillespie. A simple stochastic gene substitution model. , 1983, Theoretical population biology.
[19] E. D. Weinberger,et al. The NK model of rugged fitness landscapes and its application to maturation of the immune response. , 1989, Journal of theoretical biology.
[20] J. Gravner,et al. Percolation on the fitness hypercube and the evolution of reproductive isolation. , 1997, Journal of theoretical biology.
[21] H Allen Orr. THE POPULATION GENETICS OF ADAPTATION ON CORRELATED FITNESS LANDSCAPES: THE BLOCK MODEL , 2006, Evolution; international journal of organic evolution.
[22] Jeffrey E. Barrick,et al. Genome evolution and adaptation in a long-term experiment with Escherichia coli , 2009, Nature.
[23] H. A. Orr,et al. THE POPULATION GENETICS OF ADAPTATION: THE ADAPTATION OF DNA SEQUENCES , 2002, Evolution; international journal of organic evolution.
[24] S. Tonegawa. Somatic generation of antibody diversity , 1983, Nature.
[25] Thanat Chookajorn,et al. Stepwise acquisition of pyrimethamine resistance in the malaria parasite , 2009, Proceedings of the National Academy of Sciences.
[26] T. Ohta. THE NEARLY NEUTRAL THEORY OF MOLECULAR EVOLUTION , 1992 .
[27] Jeffrey E. Barrick,et al. Genomic Analysis of a Key Innovation in an Experimental E. coli Population , 2012, Nature.
[28] Joachim Krug,et al. Evolutionary Accessibility of Mutational Pathways , 2011, PLoS Comput. Biol..
[29] Larry Bull,et al. On the Baldwin Effect , 1999, Artificial Life.
[30] E. Weinberger. NP Completeness of Kauffman's N-k Model, A Tuneable Rugged Fitness Landscape , 1996 .
[31] D. McShea. Complexity and evolution: What everybody knows , 1991 .
[32] K. Atwood,et al. Selective mechanisms in bacteria. , 1951, Cold Spring Harbor symposia on quantitative biology.
[33] Kalyanmoy Deb,et al. Long Path Problems , 1994, PPSN.
[34] Jirí Matousek,et al. Random edge can be exponential on abstract cubes , 2004, 45th Annual IEEE Symposium on Foundations of Computer Science.
[35] Ludwig Boltzmann,et al. Entgegnung auf die wärmetheoretischen Betrachtungen des Hrn. E. Zermelo , 1896 .
[36] Michael J. Wiser,et al. Long-Term Dynamics of Adaptation in Asexual Populations , 2013, Science.
[37] Hartmut Klauck. On the Hardness of Global and Local Approximation , 1996, SWAT.
[38] A. Ariew. Ernst Mayr's 'ultimate/proximate' distinction reconsidered and reconstructed , 2003 .
[39] Abraham P. Punnen,et al. Approximate local search in combinatorial optimization , 2004, SODA '04.
[40] J. Noel,et al. Quantitative exploration of the catalytic landscape separating divergent plant sesquiterpene synthases , 2008, Nature chemical biology.
[41] Mihalis Yannakakis,et al. How easy is local search? , 1985, 26th Annual Symposium on Foundations of Computer Science (sfcs 1985).
[42] Stuart A. Kauffman,et al. ORIGINS OF ORDER IN EVOLUTION: SELF-ORGANIZATION AND SELECTION , 1992 .
[43] Richard E. Lenski,et al. Phenotypic and Genomic Evolution during a 20,000‐Generation Experiment with the Bacterium Escherichia coli , 2010 .
[44] D. J. Kiviet,et al. Reciprocal sign epistasis is a necessary condition for multi-peaked fitness landscapes. , 2011, Journal of theoretical biology.
[45] Jan W. Rivkin,et al. Patterned Interactions in Complex Systems: Implications for Exploration , 2007, Manag. Sci..
[46] J. Gillespie. The causes of molecular evolution , 1991 .
[47] O. Tenaillon,et al. The rule of declining adaptability in microbial evolution experiments , 2015, Front. Genet..
[48] M. Whitlock,et al. MULTIPLE FITNESS PEAKS AND EPISTASIS , 1995 .
[49] J. Gillespie. MOLECULAR EVOLUTION OVER THE MUTATIONAL LANDSCAPE , 1984, Evolution; international journal of organic evolution.
[50] J. Krug,et al. Quantitative analyses of empirical fitness landscapes , 2012, 1202.4378.
[51] Varun Kanade,et al. Evolution with Recombination , 2011, 2011 IEEE 52nd Annual Symposium on Foundations of Computer Science.
[52] J. Krug,et al. Exploring the Effect of Sex on Empirical Fitness Landscapes , 2009, The American Naturalist.
[53] Nigel F. Delaney,et al. Diminishing Returns Epistasis Among Beneficial Mutations Decelerates Adaptation , 2011, Science.
[54] W. H. Kane. On Cause and Effect in Biology. , 1962, Science.
[55] B. Crespi,et al. The evolution of maladaptation , 2000, Heredity.
[56] M. Moran,et al. A brief history. , 2004, Journal of the Medical Association of Georgia.
[57] J. Baldwin. A New Factor in Evolution , 1896, The American Naturalist.
[58] Tim Roughgarden,et al. Computing equilibria: a computational complexity perspective , 2015, Electron. Colloquium Comput. Complex..
[59] R. Lenski,et al. Dynamics of adaptation and diversification: a 10,000-generation experiment with bacterial populations. , 1994, Proceedings of the National Academy of Sciences of the United States of America.
[60] David W Hall,et al. Fitness epistasis among 6 biosynthetic loci in the budding yeast Saccharomyces cerevisiae. , 2010, The Journal of heredity.
[61] D. J. Kiviet,et al. Empirical fitness landscapes reveal accessible evolutionary paths , 2007, Nature.
[62] E. Mayr. Cause and Effect in Biology: Kinds of causes, predictability, and teleology are viewed by a practicing biologist , 1961 .
[63] H. A. Orr,et al. THE POPULATION GENETICS OF ADAPTATION: THE DISTRIBUTION OF FACTORS FIXED DURING ADAPTIVE EVOLUTION , 1998, Evolution; international journal of organic evolution.
[64] L Partridge,et al. Limits to natural selection , 2000, BioEssays : news and reviews in molecular, cellular and developmental biology.
[65] S. Kauffman,et al. Towards a general theory of adaptive walks on rugged landscapes. , 1987, Journal of theoretical biology.
[66] R. Lenski,et al. Long-term experimental evolution in Escherichia coli. XI. Rejection of non-transitive interactions as cause of declining rate of adaptation , 2002, BMC Evolutionary Biology.
[67] James P. Crutchfield,et al. Evolutionary dynamics : exploring the interplay of selection, accident, neutrality, and function , 2003 .
[68] Nadia Creignou,et al. The complexity of Boolean constraint satisfaction local search problems , 2005, Annals of Mathematics and Artificial Intelligence.
[69] Leroy Hood,et al. A single VH gene segment encodes the immune response to phosphorylcholine: Somatic mutation is correlated with the class of the antibody , 1981, Cell.
[70] Craig A. Tovey,et al. Low order polynomial bounds on the expected performance of local improvement algorithms , 1986, Math. Program..
[71] Leslie G. Valiant,et al. A theory of the learnable , 1984, STOC '84.
[72] Leslie G. Valiant,et al. Evolution with Drifting Targets , 2010, COLT.
[73] R. Lenski,et al. The population genetics of ecological specialization in evolving Escherichia coli populations , 2000, Nature.
[74] Tibor Szabó,et al. Unique sink orientations of cubes , 2001, Proceedings 2001 IEEE International Conference on Cluster Computing.