Effects of substitutions in the CXXC active-site motif of the extracytoplasmic thioredoxin ResA.

The thiol-disulfide oxidoreductase ResA from Bacillus subtilis fulfils a reductive role in cytochrome c maturation. The pK(a) values for the CEPC (one-letter code) active-site cysteine residues of ResA are unusual for thioredoxin-like proteins in that they are both high (>8) and within 0.5 unit of each other. To determine the contribution of the inter-cysteine dipeptide of ResA to its redox and acid-base properties, three variants (CPPC, CEHC and CPHC) were generated representing a stepwise conversion into the active-site sequence of the high-potential DsbA protein from Escherichia coli. The substitutions resulted in large decreases in the pK(a) values of both the active-site cysteine residues: in CPHC (DsbA-type) ResA, DeltapK(a) values of -2.5 were measured for both cysteine residues. Increases in midpoint reduction potentials were also observed, although these were comparatively small: CPHC (DsbA-type) ResA exhibited an increase of +40 mV compared with the wild-type protein. Unfolding studies revealed that, despite the observed differences in the properties of the reduced proteins, changes in stability were largely confined to the oxidized state. High-resolution structures of two of the variants (CEHC and CPHC ResA) in their reduced states were determined and are discussed in terms of the observed changes in properties. Finally, the in vivo functional properties of CEHC ResA are shown to be significantly affected compared with those of the wild-type protein.

[1]  R. Raines,et al.  The CXXC motif: a rheostat in the active site. , 1997, Biochemistry.

[2]  A. Holmgren,et al.  Thioredoxin catalyzes the reduction of insulin disulfides by dithiothreitol and dihydrolipoamide. , 1979, The Journal of biological chemistry.

[3]  G. Kleywegt,et al.  Checking your imagination: applications of the free R value. , 1996, Structure.

[4]  T. Creighton,et al.  Reactivity and ionization of the active site cysteine residues of DsbA, a protein required for disulfide bond formation in vivo. , 1994, Biochemistry.

[5]  P. Jocelyn Biochemistry of the SH group , 1972 .

[6]  J. Yu,et al.  Studies of the cytochrome subunits of menaquinone:cytochrome c reductase (bc complex) of Bacillus subtilis. Evidence for the covalent attachment of heme to the cytochrome b subunit. , 1998, The Journal of biological chemistry.

[7]  M. Brunori,et al.  A Strategic Protein in Cytochrome c Maturation , 2007, Journal of Biological Chemistry.

[8]  A Vagin,et al.  An approach to multi-copy search in molecular replacement. , 2000, Acta crystallographica. Section D, Biological crystallography.

[9]  T. Creighton,et al.  Ionisation of cysteine residues at the termini of model alpha-helical peptides. Relevance to unusual thiol pKa values in proteins of the thioredoxin family. , 1995, Journal of molecular biology.

[10]  T. Kortemme,et al.  Ionization-reactivity relationships for cysteine thiols in polypeptides. , 1998, Biochemistry.

[11]  George M. Whitesides,et al.  Rate constants and equilibrium constants for thiol-disulfide interchange reactions involving oxidized glutathione , 1980 .

[12]  L. Hederstedt,et al.  Bacillus subtilis CcdA-defective mutants are blocked in a late step of cytochrome c biogenesis , 1997, Journal of bacteriology.

[13]  L. Hederstedt,et al.  Bacillus subtilis ResA Is a Thiol-Disulfide Oxidoreductase involved in Cytochrome c Synthesis* , 2003, The Journal of Biological Chemistry.

[14]  Anastassis Perrakis,et al.  Developments in the CCP4 molecular-graphics project. , 2004, Acta crystallographica. Section D, Biological crystallography.

[15]  R. Glockshuber,et al.  Influence of the pK a value of the buried, active‐site cysteine on the redox properties of thioredoxin‐like oxidoreductases , 2000, FEBS letters.

[16]  L. Hederstedt Molecular properties, genetics, and biosynthesis of Bacillus subtilis succinate dehydrogenase complex. , 1986, Methods in enzymology.

[17]  M. Saraste,et al.  Bacillus subtilis chytochrome oxidase mutants: biochemical analysis and genetic evidence for two aa3‐type oxidases , 1991, Molecular microbiology.

[18]  L. Moroder,et al.  Redox potentials of active-site bis(cysteinyl) fragments of thiol-protein oxidoreductases. , 1993, Biochemistry.

[19]  J. Thornton,et al.  PROCHECK: a program to check the stereochemical quality of protein structures , 1993 .

[20]  C. Yanisch-Perron,et al.  Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors. , 1985, Gene.

[21]  R. Glockshuber,et al.  A single dipeptide sequence modulates the redox properties of a whole enzyme family. , 1998, Folding & design.

[22]  C. Wachenfeldt,et al.  Identification and characterization of the ccdA gene, required for cytochrome c synthesis in Bacillus subtilis , 1997, Journal of bacteriology.

[23]  W. Delano The PyMOL Molecular Graphics System , 2002 .

[24]  H. Hennecke,et al.  An unusual gene cluster for the cytochrome bc 1 complex in Bradyrhizobium japonicum and its requirement for effective root nodule symbiosis , 1989, Cell.

[25]  L. Hederstedt,et al.  The Active-Site Cysteinyls and Hydrophobic Cavity Residues of ResA Are Important for Cytochrome c Maturation in Bacillus subtilis , 2008, Journal of bacteriology.

[26]  D. Ort,et al.  Measurement of equilibrium midpoint potentials of thiol/disulfide regulatory groups on thioredoxin-activated chloroplast enzymes. , 1995, Methods in enzymology.

[27]  A. Holmgren,et al.  Mimicking the active site of protein disulfide-isomerase by substitution of proline 34 in Escherichia coli thioredoxin. , 1991, The Journal of biological chemistry.

[28]  T. Creighton,et al.  Electrostatic interactions in the active site of the N-terminal thioredoxin-like domain of protein disulfide isomerase. , 1996, Biochemistry.

[29]  N. L. Le Brun,et al.  Structural Basis of Redox-coupled Protein Substrate Selection by the Cytochrome c Biosynthesis Protein ResA* , 2004, Journal of Biological Chemistry.

[30]  N. L. Le Brun,et al.  Molecular Basis for Specificity of the Extracytoplasmic Thioredoxin ResA* , 2006, Journal of Biological Chemistry.

[31]  P. Evans,et al.  Scaling and assessment of data quality. , 2006, Acta crystallographica. Section D, Biological crystallography.

[32]  A. Holmgren,et al.  Differential reactivity of the functional sulfhydryl groups of cysteine-32 and cysteine-35 present in the reduced form of thioredoxin from Escherichia coli. , 1980, The Journal of biological chemistry.

[33]  J. Sambrook,et al.  Molecular Cloning: A Laboratory Manual , 2001 .

[34]  James W. A. Allen,et al.  C-type cytochromes: diverse structures and biogenesis systems pose evolutionary problems. , 2003, Philosophical transactions of the Royal Society of London. Series B, Biological sciences.

[35]  Goedele Roos,et al.  The conserved active site proline determines the reducing power of Staphylococcus aureus thioredoxin. , 2007, Journal of molecular biology.

[36]  P. S. Kim,et al.  Urea dependence of thiol-disulfide equilibria in thioredoxin: confirmation of the linkage relationship and a sensitive assay for structure. , 1989, Biochemistry.

[37]  A G Leslie,et al.  Biological Crystallography Integration of Macromolecular Diffraction Data , 2022 .

[38]  R. Raines,et al.  Microscopic pKa values of Escherichia coli thioredoxin. , 1997, Biochemistry.

[39]  L. Guddat,et al.  Crystal structures of reduced and oxidized DsbA: investigation of domain motion and thiolate stabilization. , 1998, Structure.

[40]  P. Fortnagel,et al.  Analysis of Sporulation Mutants II. Mutants Blocked in the Citric Acid Cycle , 1968, Journal of bacteriology.

[41]  J. Winther,et al.  Why is DsbA such an oxidizing disulfide catalyst? , 1995, Cell.

[42]  R. Glockshuber,et al.  Redox properties of protein disulfide isomerase (dsba) from escherichia coli , 1993, Protein science : a publication of the Protein Society.

[43]  G M Whitesides,et al.  Rates of thiol-disulfide interchange reactions involving proteins and kinetic measurements of thiol pKa values. , 1980, Biochemistry.

[44]  G. Murshudov,et al.  Refinement of macromolecular structures by the maximum-likelihood method. , 1997, Acta crystallographica. Section D, Biological crystallography.

[45]  L. Hederstedt,et al.  Genes required for cytochrome c synthesis inBacillus subtilis , 2000, Molecular microbiology.

[46]  R. V. van Spanning,et al.  Heterologous NNR-Mediated Nitric Oxide Signaling inEscherichia coli , 2000, Journal of bacteriology.

[47]  Kevin Cowtan,et al.  research papers Acta Crystallographica Section D Biological , 2005 .

[48]  R. Glockshuber,et al.  Characterization of Escherichia coli thioredoxin variants mimicking the active‐sites of other thiol/disulfide oxidoreductases , 1998, Protein science : a publication of the Protein Society.

[49]  R. Glockshuber,et al.  Replacement of Pro109 by His in TlpA, a thioredoxin‐like protein from Bradyrhizobium japonicum, alters its redox properties but not its in vivo functions , 1997, FEBS letters.

[50]  J. Warwicker,et al.  A molecular model for the redox potential difference between thioredoxin and DsbA, based on electrostatics calculations. , 1995, Journal of molecular biology.