Automated segmentation of fluid regions in optical coherence tomography B-scan images of age-related macular degeneration

Abstract Age-related macular degeneration (AMD) is a common eye disease that causes progressive vision loss in people older than 50 years. Fluid regions in retina are the most characteristic of AMD. Accurately segmenting fluid regions is crucial for the early diagnosis of AMD, and assessment of treatment efficacy. In this paper, we propose an automatic deep learning method constructed by integrating Squeeze-and-Excitation blocks with U-Net named SEUNet to segment fluid regions and classify OCT B-scan images to AMD or normal image. The proposed method comprises three stages: (1) preprocessing stage that includes image noise removal, locating the image on the area of interest, and image color-reversing; (2) fluid region segmentation stage which is based on U-Net and constructed by integrating Squeeze-and-Excitation block to segment fluid region; and (3) image classification stage that classifies image to AMD or normal image. Experimental results show that the proposed method have an average IOU coefficient of 0.9035, an average Dice coefficient of 0.9421, an average precision of 0.9446, and an average recall of 0.9464. Therefore, the proposed method can effectively segment fluid regions in OCT B-scan images.

[1]  Milan Sonka,et al.  Stratified Sampling Voxel Classification for Segmentation of Intraretinal and Subretinal Fluid in Longitudinal Clinical OCT Data , 2015, IEEE Transactions on Medical Imaging.

[2]  Thomas Brox,et al.  U-Net: Convolutional Networks for Biomedical Image Segmentation , 2015, MICCAI.

[3]  Sina Farsiu,et al.  Kernel regression based segmentation of optical coherence tomography images with diabetic macular edema. , 2015, Biomedical optics express.

[4]  Trevor Darrell,et al.  Fully Convolutional Networks for Semantic Segmentation , 2017, IEEE Transactions on Pattern Analysis and Machine Intelligence.

[5]  Milan Sonka,et al.  Geodesic Graph Cut Based Retinal Fluid Segmentation in Optical Coherence Tomography , 2015 .

[6]  Yue Wu,et al.  Deep-Learning Based, Automated Segmentation of Macular Edema in Optical Coherence Tomography , 2017, bioRxiv.

[7]  Sohini Roy Chowdhury,et al.  Segmentation of Intra-Retinal Cysts From Optical Coherence Tomography Images Using a Fully Convolutional Neural Network Model , 2019, IEEE Journal of Biomedical and Health Informatics.

[8]  Thomas Theelen,et al.  Deep learning approach for the detection and quantification of intraretinal cystoid fluid in multivendor optical coherence tomography. , 2018, Biomedical optics express.

[9]  Jerry L Prince,et al.  Automatic segmentation of microcystic macular edema in OCT. , 2014, Biomedical optics express.

[10]  J. Schmitt,et al.  Speckle in optical coherence tomography. , 1999, Journal of biomedical optics.

[11]  Thomas Schultz,et al.  Algorithms for the Automated Analysis of Age-Related Macular Degeneration Biomarkers on Optical Coherence Tomography: A Systematic Review , 2017, Translational vision science & technology.

[12]  Enhua Wu,et al.  Squeeze-and-Excitation Networks , 2017, IEEE Transactions on Pattern Analysis and Machine Intelligence.

[13]  Kostadin Dabov,et al.  BM3D Image Denoising with Shape-Adaptive Principal Component Analysis , 2009 .

[14]  Keshab K. Parhi,et al.  Fully Automated Segmentation of Fluid/Cyst Regions in Optical Coherence Tomography Images With Diabetic Macular Edema Using Neutrosophic Sets and Graph Algorithms , 2018, IEEE Transactions on Biomedical Engineering.

[15]  Bianca S. Gerendas,et al.  Fully Automated Detection and Quantification of Macular Fluid in OCT Using Deep Learning. , 2017, Ophthalmology.

[16]  Rongchang Zhao,et al.  Retinal vessel optical coherence tomography images for anemia screening , 2018, Medical & Biological Engineering & Computing.

[17]  Behzad Nazari,et al.  Fully-automated segmentation of fluid regions in exudative age-related macular degeneration subjects: Kernel graph cut in neutrosophic domain , 2017, PloS one.

[18]  Xinjian Chen,et al.  Automated segmentation of intraretinal cystoid macular edema for retinal 3D OCT images with macular hole , 2015, 2015 IEEE 12th International Symposium on Biomedical Imaging (ISBI).

[19]  Christian Simader,et al.  Predictive Value of Retinal Morphology for Visual Acuity Outcomes of Different Ranibizumab Treatment Regimens for Neovascular AMD. , 2016, Ophthalmology.

[20]  John S. Werner,et al.  Implementations of three OCT angiography (OCTA) methods with 1.7 MHz A-scan rate OCT system on imaging of human retinal and choroidal vasculature , 2018, Optics & Laser Technology.

[21]  Roberto Cipolla,et al.  SegNet: A Deep Convolutional Encoder-Decoder Architecture for Image Segmentation , 2015, IEEE Transactions on Pattern Analysis and Machine Intelligence.

[22]  A. Ramé [Age-related macular degeneration]. , 2006, Revue de l'infirmiere.

[23]  M. Usman Akram,et al.  Detection of Glaucoma Using Cup to Disc Ratio From Spectral Domain Optical Coherence Tomography Images , 2018, IEEE Access.

[24]  Hao Wei,et al.  Automated retinal layer segmentation in OCT images of age-related macular degeneration , 2019, IET Image Process..