Intraspecific ITS Variability in the Kingdom Fungi as Expressed in the International Sequence Databases and Its Implications for Molecular Species Identification
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R. Henrik Nilsson | Erik Kristiansson | Nils Hallenberg | Karl-Henrik Larsson | Martin Ryberg | E. Kristiansson | K. Larsson | R. H. Nilsson | M. Ryberg | N. Hallenberg | Henrik R. Nilsson
[1] D. Rizzo,et al. Intra-specific and intra-sporocarp ITS variation of ectomycorrhizal fungi as assessed by rDNA sequencing of sporocarps and pooled ectomycorrhizal roots from a Quercus woodland , 2007, Mycorrhiza.
[2] T. Bruns,et al. Fungal networks made of humans: UNITE, FESIN, and frontiers in fungal ecology. , 2008, The New phytologist.
[3] Q. Wheeler,et al. Taxonomic triage and the poverty of phylogeny. , 2004, Philosophical transactions of the Royal Society of London. Series B, Biological sciences.
[4] Jeremy R. deWaard,et al. Biological identifications through DNA barcodes , 2003, Proceedings of the Royal Society of London. Series B: Biological Sciences.
[5] Kenji Matsuura,et al. Reconstructing the early evolution of Fungi using a six-gene phylogeny , 2006, Nature.
[6] E. Böttger,et al. Internal Transcribed Spacer Sequencing versus Biochemical Profiling for Identification of Medically Important Yeasts , 2006, Journal of Clinical Microbiology.
[7] J. Guarro,et al. Developments in Fungal Taxonomy , 1999, Clinical Microbiology Reviews.
[8] S. Hinrichs,et al. Identification of Aspergillus Species Using Internal Transcribed Spacer Regions 1 and 2 , 2000, Journal of Clinical Microbiology.
[9] P. Bridge,et al. The impact of molecular data in fungal systematics , 2005 .
[10] Izabela Makalowska,et al. FUSARIUM-ID v. 1.0: A DNA Sequence Database for Identifying Fusarium , 2004, European Journal of Plant Pathology.
[11] John Bissett,et al. An oligonucleotide barcode for species identification in Trichoderma and Hypocrea. , 2005, Fungal genetics and biology : FG & B.
[12] R. Henrik Nilsson,et al. Taxonomic Reliability of DNA Sequences in Public Sequence Databases: A Fungal Perspective , 2006, PloS one.
[13] G. Mueller,et al. An estimate of the lower limit of global fungal diversity , 2006, Biodiversity and Conservation.
[14] T. Sugita,et al. Identification of medically relevant Trichosporon species based on sequences of internal transcribed spacer regions and construction of a database for Trichosporon identification. , 1999, Journal of clinical microbiology.
[15] M. Hershkovitz,et al. Deep-level diagnostic value of the rDNA-ITS region. , 1996, Molecular biology and evolution.
[16] D. Tautz,et al. A plea for DNA taxonomy , 2003 .
[17] Michael Weiss,et al. A higher-level phylogenetic classification of the Fungi. , 2007, Mycological research.
[18] M. Rupp,et al. Utilization of the internal transcribed spacer regions as molecular targets to detect and identify human fungal pathogens. , 2002, Medical mycology.
[19] R. Henrik Nilsson,et al. galaxie-CGI scripts for sequence identification through automated phylogenetic analysis , 2004, Bioinform..
[20] A. J. Jones,et al. At Least 1 in 20 16S rRNA Sequence Records Currently Held in Public Repositories Is Estimated To Contain Substantial Anomalies , 2005, Applied and Environmental Microbiology.
[21] D. Hillis,et al. Ribosomal DNA: Molecular Evolution and Phylogenetic Inference , 1991, The Quarterly Review of Biology.
[22] J. Wendel,et al. Ribosomal ITS sequences and plant phylogenetic inference. , 2003, Molecular phylogenetics and evolution.
[23] Mark Blaxter,et al. Defining operational taxonomic units using DNA barcode data , 2005, Philosophical Transactions of the Royal Society B: Biological Sciences.
[24] P. Bridge,et al. On the unreliability of published DNA sequences. , 2003, The New phytologist.
[25] Richard P. Shefferson,et al. Evolutionary studies of ectomycorrhizal fungi: recent advances and future directions , 2004 .
[26] Gaurav Vaidya,et al. DNA barcoding and taxonomy in Diptera: a tale of high intraspecific variability and low identification success. , 2006, Systematic biology.
[27] Nils Hallenberg,et al. Preserving accuracy in GenBank , 2008 .
[28] Christopher W. Schadt,et al. Seasonal Dynamics of Previously Unknown Fungal Lineages in Tundra Soils , 2003, Science.
[29] T. Kuyper,et al. Uniting Tricholoma sulphureum and T. bufonium. , 2004, Mycological research.
[30] Sean R. Eddy,et al. Profile hidden Markov models , 1998, Bioinform..
[31] T. Sugita,et al. Identification of Medically RelevantTrichosporon Species Based on Sequences of Internal Transcribed Spacer Regions and Construction of a Database forTrichosporon Identification , 1999, Journal of Clinical Microbiology.
[32] A. Sciarrino,et al. Mutation model for nucleotide sequences based on crystal basis. , 2005, Bio Systems.
[33] D. Stevenson,et al. A comparison of algorithms for the identification of specimens using DNA barcodes: examples from gymnosperms , 2007, Cladistics : the international journal of the Willi Hennig Society.
[34] Erik Kristiansson,et al. Mining metadata from unidentified ITS sequences in GenBank: A case study in Inocybe (Basidiomycota) , 2008, BMC Evolutionary Biology.
[35] R. Turco,et al. Inter- and intraspecific resolution of nrDNA TRFLP assessed by computer-simulated restriction analysis of a diverse collection of ectomycorrhizal fungi. , 2005, Mycological research.
[36] D. Hibbett,et al. Research Coordination Networks: a phylogeny for kingdom Fungi (Deep Hypha) , 2006, Mycologia.
[37] D. Hawksworth. The magnitude of fungal diversity: the 1.5 million species estimate revisited * * Paper presented at , 2001 .
[38] T. Sieber,et al. Intraspecific comparisons of Laetiporus sulphureus isolates from broadleaf and coniferous trees in Europe , 1999 .
[39] David L. Wheeler,et al. GenBank , 2015, Nucleic Acids Res..
[40] 김삼묘,et al. “Bioinformatics” 특집을 내면서 , 2000 .
[41] Jos Houbraken,et al. Prospects for fungus identification using CO1 DNA barcodes, with Penicillium as a test case , 2007, Proceedings of the National Academy of Sciences.
[42] R. Henrik Nilsson,et al. Approaching the taxonomic affiliation of unidentified sequences in public databases – an example from the mycorrhizal fungi , 2005, BMC Bioinformatics.
[43] T. Lott,et al. Assessment of Ribosomal Large-Subunit D1-D2, Internal Transcribed Spacer 1, and Internal Transcribed Spacer 2 Regions as Targets for Molecular Identification of Medically Important Aspergillus Species , 2005, Journal of Clinical Microbiology.
[44] Hsien-Chang Chang,et al. Identification of Medically Important Yeast Species by Sequence Analysis of the Internal Transcribed Spacer Regions , 2006, Journal of Clinical Microbiology.
[45] F. Cohan. What are bacterial species? , 2002, Annual review of microbiology.
[46] D. Hibbett,et al. The phylogenetic distribution of resupinate forms across the major clades of mushroom‐forming fungi (Homobasidiomycetes) , 2005 .
[47] T. Bruns,et al. The molecular revolution in ectomycorrhizal ecology: peeking into the black‐box , 2001, Molecular ecology.
[48] J. Rosselló,et al. Better the devil you know? Guidelines for insightful utilization of nrDNA ITS in species-level evolutionary studies in plants. , 2007, Molecular phylogenetics and evolution.
[49] J. Thompson,et al. The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. , 1997, Nucleic acids research.
[50] James S Farris,et al. The full-length phylogenetic tree from 1551 ribosomal sequences of chitinous fungi, Fungi. , 2003, Mycological research.
[51] Irina S Druzhinina,et al. TrichoBLAST: a multilocus database for Trichoderma and Hypocrea identifications. , 2005, Mycological research.
[52] D. Hibbett,et al. Phylogenetic species recognition and species concepts in fungi. , 2000, Fungal genetics and biology : FG & B.
[53] B. Dell,et al. Phylogeography of the ectomycorrhizal Pisolithus species as inferred from nuclear ribosomal DNA ITS sequences , 2002 .
[54] Q. Wheeler,et al. The perils of DNA barcoding and the need for integrative taxonomy. , 2005, Systematic biology.
[55] A. Limaye,et al. Polymorphic Internal Transcribed Spacer Region 1 DNA Sequences Identify Medically Important Yeasts , 2001, Journal of Clinical Microbiology.
[56] G. Mueller,et al. A ‘dirty’ business: testing the limitations of terminal restriction fragment length polymorphism (TRFLP) analysis of soil fungi , 2006, Molecular ecology.
[57] T. Bruns,et al. Detection of plot-level changes in ectomycorrhizal communities across years in an old-growth mixed-conifer forest. , 2005, The New phytologist.
[58] Robin Sen,et al. UNITE: a database providing web-based methods for the molecular identification of ectomycorrhizal fungi. , 2005, The New phytologist.
[59] E. Larsson,et al. High phylogenetic diversity among corticioid homobasidiomycetes. , 2004, Mycological research.