Efficient low-order scaling method for large-scale electronic structure calculations with localized basis functions

An efficient low-order scaling method is presented for large-scale electronic structure calculations based on the density-functional theory using localized basis functions, which directly computes selected elements of the density matrix by a contour integration of the Green's function evaluated with a nested dissection approach for resultant sparse matrices. The computational effort of the method scales as $\text{O}[N{({\text{log}}_{2}\text{ }N)}^{2}]$, $\text{O}({N}^{2})$, and $\text{O}({N}^{7/3})$ for one-, two-, and three-dimensional systems, respectively, where $N$ is the number of basis functions. Unlike $\text{O}(N)$ methods developed so far the approach is a numerically exact alternative to conventional $\text{O}({N}^{3})$ diagonalization schemes in spite of the low-order scaling, and can be applicable to not only insulating but also metallic systems in a single framework. It is also demonstrated that the well separated data structure is suitable for the massively parallel computation, which enables us to extend the applicability of density-functional calculations for large-scale systems together with the low-order scaling.

[1]  S. Goedecker Linear scaling electronic structure methods , 1999 .

[2]  Martin,et al.  Unconstrained minimization approach for electronic computations that scales linearly with system size. , 1993, Physical review. B, Condensed matter.

[3]  Kresse,et al.  Efficient iterative schemes for ab initio total-energy calculations using a plane-wave basis set. , 1996, Physical review. B, Condensed matter.

[4]  K. Shiraishi,et al.  Large-scale density-functional calculations on silicon divacancies , 2008 .

[5]  Xinyuan Wu,et al.  Improved Muller method and Bisection method with global and asymptotic superlinear convergence of both point and interval for solving nonlinear equations , 2005, Appl. Math. Comput..

[6]  Eric Darve,et al.  Computing entries of the inverse of a sparse matrix using the FIND algorithm , 2008, J. Comput. Phys..

[7]  Eiji Tsuchida Augmented Orbital Minimization Method for Linear Scaling Electronic Structure Calculations(Condensed matter: electronic structure and electrical, magnetic, and optical properties) , 2007 .

[8]  Reinhold Schneider,et al.  Daubechies wavelets as a basis set for density functional pseudopotential calculations. , 2008, The Journal of chemical physics.

[9]  P. Lagoudakis,et al.  Large-scale first principles and tight-binding density functional theory calculations on hydrogen-passivated silicon nanorods , 2010, Journal of physics. Condensed matter : an Institute of Physics journal.

[10]  David R. Bowler,et al.  The Energetics of Hut-Cluster Self-Assembly in Ge/Si(001) from Linear-Scaling DFT Calculations(Condensed matter: electronic structure and electrical, magnetic, and optical properties) , 2008 .

[11]  D. Pettifor,et al.  New many-body potential for the bond order. , 1989, Physical review letters.

[12]  Gustavo E. Scuseria,et al.  What is the Best Alternative to Diagonalization of the Hamiltonian in Large Scale Semiempirical Calculations , 1999 .

[13]  Taisuke Ozaki O(N) Krylov-subspace method for large-scale ab initio electronic structure calculations , 2006 .

[14]  A. George Nested Dissection of a Regular Finite Element Mesh , 1973 .

[15]  T. Ozaki,et al.  Formation of silicon-fullerene-linked nanowires inside carbon nanotubes: A molecular-dynamics and first-principles study , 2008 .

[16]  A. Nakano,et al.  Divide-and-conquer density functional theory on hierarchical real-space grids: Parallel implementation and applications , 2008 .

[17]  K. Kitaura,et al.  Fragment molecular orbital method: an approximate computational method for large molecules , 1999 .

[18]  W. Kohn,et al.  Self-Consistent Equations Including Exchange and Correlation Effects , 1965 .

[19]  Full-Potential Screened Korringa-Kohn-Rostoker Method and Its Applications , 2009 .

[20]  T. Arias,et al.  Iterative minimization techniques for ab initio total energy calculations: molecular dynamics and co , 1992 .

[21]  Alston S. Householder,et al.  Unitary Triangularization of a Nonsymmetric Matrix , 1958, JACM.

[22]  K. Varga Multidomain decomposition approach to large scale electronic structure calculations , 2010 .

[23]  Taisuke Ozaki,et al.  Numerical atomic basis orbitals from H to Kr , 2004 .

[24]  A. Zunger,et al.  A new method for diagonalising large matrices , 1985 .

[25]  Martin,et al.  Linear system-size scaling methods for electronic-structure calculations. , 1995, Physical review. B, Condensed matter.

[26]  B. Alder,et al.  THE GROUND STATE OF THE ELECTRON GAS BY A STOCHASTIC METHOD , 2010 .

[27]  Yoong-Kee Choe,et al.  Nature of proton dynamics in a polymer electrolyte membrane, nafion: a first-principles molecular dynamics study. , 2009, Physical chemistry chemical physics : PCCP.

[28]  E. Weinan,et al.  Fast algorithm for extracting the diagonal of the inverse matrix with application to the electronic structure analysis of metallic systems , 2009 .

[29]  P. Pulay Convergence acceleration of iterative sequences. the case of scf iteration , 1980 .

[30]  A. Zunger,et al.  Self-interaction correction to density-functional approximations for many-electron systems , 1981 .

[31]  Francesco Luigi Gervasio,et al.  Electronic structure of wet DNA. , 2002, Physical review letters.

[32]  Vipin Kumar,et al.  A Fast and High Quality Multilevel Scheme for Partitioning Irregular Graphs , 1998, SIAM J. Sci. Comput..

[33]  Li,et al.  Density-matrix electronic-structure method with linear system-size scaling. , 1993, Physical review. B, Condensed matter.

[34]  Nicholas D. M. Hine,et al.  Linear-scaling density-functional theory with tens of thousands of atoms: Expanding the scope and scale of calculations with ONETEP , 2009, Comput. Phys. Commun..

[35]  Kwang-Ting Cheng,et al.  Fundamentals of algorithms , 2009 .

[36]  Burke,et al.  Generalized Gradient Approximation Made Simple. , 1996, Physical review letters.

[37]  Stefan Goedecker,et al.  Linear scaling electronic structure methods in chemistry and physics , 2003, Comput. Sci. Eng..

[38]  Martin Head-Gordon,et al.  Energy renormalization-group method for electronic structure of large systems , 1998 .

[39]  Eric Darve,et al.  A hybrid method for the parallel computation of Green's functions , 2009, J. Comput. Phys..

[40]  D R Bowler,et al.  Calculations for millions of atoms with density functional theory: linear scaling shows its potential , 2009, Journal of physics. Condensed matter : an Institute of Physics journal.

[41]  Aoki,et al.  Rapidly convergent bond order expansion for atomistic simulations. , 1993, Physical review letters.

[42]  T. Ozaki,et al.  Electronic and optical properties of polyicosahedral Si nanostructures : A first-principles study , 2008 .

[43]  Taisuke Ozaki,et al.  Continued fraction representation of the Fermi-Dirac function for large-scale electronic structure calculations , 2007 .

[44]  Car,et al.  Unified approach for molecular dynamics and density-functional theory. , 1985, Physical review letters.

[45]  P. Hohenberg,et al.  Inhomogeneous Electron Gas , 1964 .

[46]  Baroni,et al.  Conjugate gradient minimization of the energy functional: A new method for electronic structure calculation. , 1989, Physical review. B, Condensed matter.

[47]  Taisuke Ozaki,et al.  Variationally optimized atomic orbitals for large-scale electronic structures , 2003 .

[48]  R. Takayama,et al.  Linear algebraic calculation of the Green’s function for large-scale electronic structure theory , 2006 .

[49]  Kiyoyuki Terakura,et al.  Convergent recursive O(N) method for ab initio tight-binding calculations , 2001 .

[50]  David R. Bowler,et al.  Density functional calculations of Ge(105): Local basis sets and O(N) methods , 2007 .

[51]  Martins,et al.  Efficient pseudopotentials for plane-wave calculations. , 1991, Physical review. B, Condensed matter.

[52]  Allan,et al.  Solution of Schrödinger's equation for large systems. , 1989, Physical review. B, Condensed matter.

[53]  W. F. Tinney,et al.  On computing certain elements of the inverse of a sparse matrix , 1975, Commun. ACM.

[54]  Tsukada,et al.  Adaptive finite-element method for electronic-structure calculations. , 1996, Physical review. B, Condensed matter.

[55]  Yang,et al.  Direct calculation of electron density in density-functional theory. , 1991, Physical review letters.