Longitudinal development of the airway microbiota in infants with cystic fibrosis

[1]  K. Wylie,et al.  Differences in the lower airway microbiota of infants with and without cystic fibrosis. , 2019, Journal of cystic fibrosis : official journal of the European Cystic Fibrosis Society.

[2]  M. Moffatt,et al.  Comparison of the upper and lower airway microbiota in children with chronic lung diseases , 2018, PloS one.

[3]  W. T. Harris,et al.  Airway microbiota across age and disease spectrum in cystic fibrosis , 2017, European Respiratory Journal.

[4]  K. Wylie,et al.  Association of Antibiotics, Airway Microbiome, and Inflammation in Infants with Cystic Fibrosis , 2017, Annals of the American Thoracic Society.

[5]  Kristine M Wylie,et al.  The lower airway microbiota in early cystic fibrosis lung disease: a longitudinal analysis , 2017, Thorax.

[6]  E. Sanders,et al.  Concordance between upper and lower airway microbiota in infants with cystic fibrosis , 2017, European Respiratory Journal.

[7]  C. Robertson,et al.  Airway Microbiota in Bronchoalveolar Lavage Fluid from Clinically Well Infants with Cystic Fibrosis , 2016, PloS one.

[8]  S. Stanojevic,et al.  Effect of pulmonary exacerbations treated with oral antibiotics on clinical outcomes in cystic fibrosis , 2016, Thorax.

[9]  E. Sanders,et al.  Development of the Nasopharyngeal Microbiota in Infants with Cystic Fibrosis. , 2016, American journal of respiratory and critical care medicine.

[10]  J. Lipuma,et al.  Culture-Based and Culture-Independent Bacteriologic Analysis of Cystic Fibrosis Respiratory Specimens , 2015, Journal of Clinical Microbiology.

[11]  S. Kidd,et al.  The outcome of H. influenzae and S. pneumoniae inter-species interactions depends on pH, nutrient availability and growth phase. , 2015, International journal of medical microbiology : IJMM.

[12]  Lars Kaderali,et al.  Comparison of Microbiomes from Different Niches of Upper and Lower Airways in Children and Adolescents with Cystic Fibrosis , 2015, PloS one.

[13]  Paul Turner,et al.  Reagent and laboratory contamination can critically impact sequence-based microbiome analyses , 2014, BMC Biology.

[14]  R. Veenhoven,et al.  Early respiratory microbiota composition determines bacterial succession patterns and respiratory health in children. , 2014, American journal of respiratory and critical care medicine.

[15]  L. Hoffman,et al.  Time between Collection and Storage Significantly Influences Bacterial Sequence Composition in Sputum Samples from Cystic Fibrosis Respiratory Infections , 2014, Journal of Clinical Microbiology.

[16]  J. Petrosino,et al.  Changes in cystic fibrosis airway microbiota at pulmonary exacerbation. , 2013, Annals of the American Thoracic Society.

[17]  Sarah L. Westcott,et al.  Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform , 2013, Applied and Environmental Microbiology.

[18]  J. Carlin,et al.  Prospective evaluation of respiratory exacerbations in children with cystic fibrosis from newborn screening to 5 years of age , 2013, Thorax.

[19]  A. Klindworth,et al.  Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies , 2012, Nucleic acids research.

[20]  M. Sogin,et al.  Prevalence of Streptococci and Increased Polymicrobial Diversity Associated with Cystic Fibrosis Patient Stability , 2012, Journal of bacteriology.

[21]  M. Welsh,et al.  Reduced Airway Surface pH Impairs Bacterial Killing in the Porcine Cystic Fibrosis Lung , 2012, Nature.

[22]  Susan Murray,et al.  Decade-long bacterial community dynamics in cystic fibrosis airways , 2012, Proceedings of the National Academy of Sciences.

[23]  John Sibert,et al.  AD Model Builder: using automatic differentiation for statistical inference of highly parameterized complex nonlinear models , 2012, Optim. Methods Softw..

[24]  Kyle Bittinger,et al.  Topographical continuity of bacterial populations in the healthy human respiratory tract. , 2011, American journal of respiratory and critical care medicine.

[25]  M. Rosenthal,et al.  Bronchoscopy in Cystic Fibrosis Infants Diagnosed by Newborn Screening , 2011, Pediatric pulmonology.

[26]  M. Surette,et al.  The genus Prevotella in cystic fibrosis airways. , 2010, Anaerobe.

[27]  William A. Walters,et al.  QIIME allows analysis of high-throughput community sequencing data , 2010, Nature Methods.

[28]  Katherine N. Lemon,et al.  The Reinforcing Effects of Loyalty Program Partnerships and Core Service Usage , 2009 .

[29]  A. Hawkins.  Cystic Fibrosis Trust , 2009 .

[30]  M. Surette,et al.  A polymicrobial perspective of pulmonary infections exposes an enigmatic pathogen in cystic fibrosis patients , 2008, Proceedings of the National Academy of Sciences.

[31]  M. Wolfgang,et al.  Detection of anaerobic bacteria in high numbers in sputum from patients with cystic fibrosis. , 2008, American journal of respiratory and critical care medicine.

[32]  G. Rogers,et al.  Bacterial activity in cystic fibrosis lung infections , 2005, Respiratory research.

[33]  M. Surette,et al.  Modulation of Pseudomonas aeruginosa gene expression by host microflora through interspecies communication , 2003, Molecular microbiology.

[34]  P. Dixon.  VEGAN, a package of R functions for community ecology , 2003 .