Molecular Characterization and Revised Systematics of Microdiaphanosoma arcuatum (Ciliophora, Colpodea)

ABSTRACT. Microdiaphanosoma arcuatum Wenzel, 1953 is a world‐wide distributed ciliate, recorded mainly in soil samples, which we have also identified in ground water samples from South Africa. This ciliate has been frequently overlooked or not determined due to its small size,∼12 μm. The genus Microdiaphanosoma is nowadays included in the class Colpodea, order Bryometopida, family Kreyellidae. The first complete small subunit (SSU) rDNA gene sequence of this ciliate was obtained from a South African isolate. Phylogenetic analysis including available SSU rDNA sequences from another Colpodea species in the GenBank strongly supported the position of M. arcuatum within the order Cyrtolophosidida instead of the order Bryometopida. The analysis also suggested a sister relationship between this species and species from the family Cyrtolophosididae.

[1]  D. Lynn,et al.  The Ciliated Protozoa: Characterization, Classification, and Guide to the Literature , 2010 .

[2]  T. Stoeck,et al.  Morphological and Molecular Characterization of a New Protist Family, Sandmanniellidae n. fam. (Ciliophora, Colpodea), with Description of Sandmanniella terricola n. g., n. sp. from the Chobe Floodplain in Botswana , 2009, The Journal of eukaryotic microbiology.

[3]  S. Adl,et al.  The New Higher Level Classification of Eukaryotes with Emphasis on the Taxonomy of Protists , 2005, The Journal of eukaryotic microbiology.

[4]  Michael P. Cummings,et al.  PAUP* [Phylogenetic Analysis Using Parsimony (and Other Methods)] , 2004 .

[5]  T. Stoeck,et al.  Methodology of Protistan Discovery: from rRNA Detection to Quality Scanning Electron Microscope Images , 2003, Applied and Environmental Microbiology.

[6]  O. Gascuel,et al.  A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. , 2003, Systematic biology.

[7]  John P. Huelsenbeck,et al.  MrBayes 3: Bayesian phylogenetic inference under mixed models , 2003, Bioinform..

[8]  Masami Hasegawa,et al.  CONSEL: for assessing the confidence of phylogenetic tree selection , 2001, Bioinform..

[9]  L. Katz,et al.  Phylogenetic Position of Sorogena stoianovitchae and Relationships within the Class Colpodea (Ciliophora) Based on SSU rDNA Sequences , 2001, The Journal of eukaryotic microbiology.

[10]  Hidetoshi Shimodaira,et al.  Multiple Comparisons of Log-Likelihoods with Applications to Phylogenetic Inference , 1999, Molecular Biology and Evolution.

[11]  D. Lynn,et al.  Phylogenetic Relationships of Orders Within the Class Colpodea (Phylum Ciliophora) Inferred from Small Subunit rRNA Gene Sequences , 1999, Journal of Molecular Evolution.

[12]  D. Lynn,et al.  Phylogenetic relationships between prostome and colpodean ciliates tested by small subunit rRNA sequences. , 1998, Molecular phylogenetics and evolution.

[13]  J. Thompson,et al.  The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. , 1997, Nucleic acids research.

[14]  M. Sogin,et al.  The characterization of enzymatically amplified eukaryotic 16S-like rRNA-coding regions. , 1988, Gene.

[15]  R. Guillard,et al.  YELLOW‐GREEN ALGAE WITH CHLOROPHYLLIDE C 1, 2 , 1972 .

[16]  L. Katz,et al.  Expanding character sampling for ciliate phylogenetic inference using mitochondrial SSU-rDNA as a molecular marker. , 2011, Protist.

[17]  L. Katz,et al.  Phylogenetic placement of the Cyrtolophosididae Stokes, 1888 (Ciliophora; Colpodea) and neotypification of Aristerostoma marinum Kahl, 1931. , 2009, International journal of systematic and evolutionary microbiology.

[18]  L. Katz,et al.  Molecular phylogenetic analysis of class Colpodea (phylum Ciliophora) using broad taxon sampling. , 2008, Molecular phylogenetics and evolution.

[19]  D. Lynn Morphology or molecules: How do we identify the major lineages of ciliates (Phylum Ciliophora) , 2003 .

[20]  Sabine Agatha,et al.  Soil ciliates (protozoa, ciliophora) from Namibia (Southwest Africa), with emphasis on two contrasting environments, the Etosha Region and the Namib Desert , 2002 .

[21]  T. A. Hall,et al.  BIOEDIT: A USER-FRIENDLY BIOLOGICAL SEQUENCE ALIGNMENT EDITOR AND ANALYSIS PROGRAM FOR WINDOWS 95/98/ NT , 1999 .

[22]  John J. Lee,et al.  An illustrated guide to the protozoa , 1985 .