A review of diffusion tensor magnetic resonance imaging computational methods and software tools
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Klaus Hahn | Indika S. Walimuni | Khader M. Hasan | Humaira Abid | K. Hasan | K. Hahn | Humaira Abid | I. S. Walimuni
[1] P J Basser,et al. New Histological and Physiological Stains Derived from Diffusion‐Tensor MR Images , 1997, Annals of the New York Academy of Sciences.
[2] S Skare,et al. Condition number as a measure of noise performance of diffusion tensor data acquisition schemes with MRI. , 2000, Journal of magnetic resonance.
[3] Alan Connelly,et al. Direct estimation of the fiber orientation density function from diffusion-weighted MRI data using spherical deconvolution , 2004, NeuroImage.
[4] Tsunehiko Nishimura,et al. Tractography to depict three layers of visual field trajectories to the calcarine gyri. , 2005, American journal of ophthalmology.
[5] Randy L. Gollub,et al. Reproducibility of quantitative tractography methods applied to cerebral white matter , 2007, NeuroImage.
[6] Jerry L. Prince,et al. Resolution of crossing fibers with constrained compressed sensing using traditional diffusion tensor MRI , 2010, Medical Imaging.
[7] Thomas R. Barrick,et al. Atlas-based segmentation of white matter tracts of the human brain using diffusion tensor tractography and comparison with classical dissection , 2008, NeuroImage.
[8] Wolfgang Grodd,et al. Comparison of gradient encoding directions for higher order tensor diffusion data , 2009, Magnetic resonance in medicine.
[9] V. Wedeen,et al. Diffusion MRI of Complex Neural Architecture , 2003, Neuron.
[10] J. Thiran,et al. Understanding diffusion MR imaging techniques: from scalar diffusion-weighted imaging to diffusion tensor imaging and beyond. , 2006, Radiographics : a review publication of the Radiological Society of North America, Inc.
[11] T. A. Carpenter,et al. Optimised diffusion-weighting for measurement of apparent diffusion coefficient (ADC) in human brain. , 1997, Magnetic resonance imaging.
[12] C. Westin,et al. Magnetic Resonance in Medicine 51:321–330 (2004) Biexponential Diffusion Tensor Analysis of Human Brain Diffusion Data , 2022 .
[13] Alexander Leemans,et al. The B‐matrix must be rotated when correcting for subject motion in DTI data , 2009, Magnetic resonance in medicine.
[14] A L Alexander,et al. Analytical computation of the eigenvalues and eigenvectors in DT-MRI. , 2001, Journal of magnetic resonance.
[15] Peter A. Calabresi,et al. Tract probability maps in stereotaxic spaces: Analyses of white matter anatomy and tract-specific quantification , 2008, NeuroImage.
[16] S. Mori,et al. Principles of Diffusion Tensor Imaging and Its Applications to Basic Neuroscience Research , 2006, Neuron.
[17] Derek K. Jones,et al. Diffusion‐tensor MRI: theory, experimental design and data analysis – a technical review , 2002 .
[18] Derek K. Jones,et al. Spatial Normalization and Averaging of Diffusion Tensor MRI Data Sets , 2002, NeuroImage.
[19] Greg Brown,et al. An automated strategy for the delineation and parcellation of commissural pathways suitable for clinical populations utilising high angular resolution diffusion imaging tractography , 2010, NeuroImage.
[20] 大内 宏之. Diffusion anisotropy measurement of brain white matter is affected by voxel size : underestimation occurs in areas with crossing fibers , 2007 .
[21] Larry A. Kramer,et al. Diffusion tensor tractography quantification of the human corpus callosum fiber pathways across the lifespan , 2009, Brain Research.
[22] Carl-Fredrik Westin,et al. Processing and visualization for diffusion tensor MRI , 2002, Medical Image Anal..
[23] Derek K. Jones,et al. Virtual in Vivo Interactive Dissection of White Matter Fasciculi in the Human Brain , 2002, NeuroImage.
[24] Derek K. Jones,et al. The effect of filter size on VBM analyses of DT-MRI data , 2005, NeuroImage.
[25] David King,et al. An image analysis pipeline for the semi-automated analysis of clinical fMRI images based on freely available software , 2010, Comput. Biol. Medicine.
[26] Thomas Netsch,et al. Quantitative evaluation of image-based distortion correction in diffusion tensor imaging , 2004, IEEE Transactions on Medical Imaging.
[27] Marcos Martín-Fernández,et al. Saturn: A software application of tensor utilities for research in neuroimaging , 2010, Comput. Methods Programs Biomed..
[28] Arash Kamali,et al. Mapping the human brain white matter tracts relative to cortical and deep gray matter using diffusion tensor imaging at high spatial resolution. , 2009, Magnetic resonance imaging.
[29] Michael I. Miller,et al. Atlas-based analysis of neurodevelopment from infancy to adulthood using diffusion tensor imaging and applications for automated abnormality detection , 2010, NeuroImage.
[30] E. Achten,et al. Simulation and experimental verification of the diffusion in an anisotropic fiber phantom. , 2008, Journal of magnetic resonance.
[31] Colin Studholme,et al. Dense feature deformation morphometry: Incorporating DTI data into conventional MRI morphometry , 2008, Medical Image Anal..
[32] M. Just,et al. Altering Cortical Connectivity: Remediation-Induced Changes in the White Matter of Poor Readers , 2009, Neuron.
[33] A. Anderson,et al. Reduction of noise in diffusion tensor images using anisotropic smoothing , 2005, Magnetic resonance in medicine.
[34] M. Fox,et al. Noninvasive functional and structural connectivity mapping of the human thalamocortical system. , 2010, Cerebral cortex.
[35] Dorothee P Auer,et al. A regularized two‐tensor model fit to low angular resolution diffusion images using basis directions , 2008, Journal of magnetic resonance imaging : JMRI.
[36] M. Ashtari,et al. Development and aging of the healthy human brain uncinate fasciculus across the lifespan using diffusion tensor tractography , 2009, Brain Research.
[37] I. Toni,et al. Spatial remapping of cortico-striatal connectivity in Parkinson's disease – a resting state fMRI study , 2009, NeuroImage.
[38] Jeremy D. Schmahmann,et al. Diffusion spectrum magnetic resonance imaging (DSI) tractography of crossing fibers , 2008, NeuroImage.
[39] S. Wakana,et al. MRI Atlas of Human White Matter , 2005 .
[40] Dinggang Shen,et al. HAMMER: hierarchical attribute matching mechanism for elastic registration , 2002, IEEE Transactions on Medical Imaging.
[41] Hangyi Jiang,et al. DtiStudio: Resource program for diffusion tensor computation and fiber bundle tracking , 2006, Comput. Methods Programs Biomed..
[42] Ayse Aralasmak,et al. Association, Commissural, and Projection Pathways and Their Functional Deficit Reported in Literature , 2006, Journal of computer assisted tomography.
[43] Li-Wei Kuo,et al. Optimization of diffusion spectrum imaging and q-ball imaging on clinical MRI system , 2008, NeuroImage.
[44] Gady Agam,et al. Corrigendum to “Development of a human brain diffusion tensor template” [NeuroImage 46 (2009) 967–980] , 2010, NeuroImage.
[45] Susumu Mori,et al. Introduction to Diffusion Tensor Imaging , 2007 .
[46] L. Lagae,et al. Construction of a stereotaxic DTI atlas with full diffusion tensor information for studying white matter maturation from childhood to adolescence using tractography‐based segmentations , 2009, Human brain mapping.
[47] Khader M Hasan,et al. Computation of the fractional anisotropy and mean diffusivity maps without tensor decoding and diagonalization: Theoretical analysis and validation , 2003, Magnetic resonance in medicine.
[48] A. Alexander,et al. Diffusion tensor imaging of the brain , 2007, Neurotherapeutics.
[49] Anders M. Dale,et al. Changes in white matter diffusion anisotropy in adolescents born prematurely , 2006, NeuroImage.
[50] E. Akkerman. The direct tensor solution and higher-order acquisition schemes for generalized diffusion tensor imaging. , 2010, Journal of magnetic resonance.
[51] Usha Sinha,et al. Geometric distortion correction of high‐resolution 3 T diffusion tensor brain images , 2005, Magnetic resonance in medicine.
[52] Stefan Skare,et al. A Model-Based Method for Retrospective Correction of Geometric Distortions in Diffusion-Weighted EPI , 2002, NeuroImage.
[53] Daniel C. Alexander,et al. Camino: Open-Source Diffusion-MRI Reconstruction and Processing , 2006 .
[54] Andrew L. Alexander,et al. Hybrid diffusion imaging , 2007, NeuroImage.
[55] Arno Klein,et al. Evaluation of 14 nonlinear deformation algorithms applied to human brain MRI registration , 2009, NeuroImage.
[56] Khader M Hasan,et al. A framework for quality control and parameter optimization in diffusion tensor imaging: theoretical analysis and validation. , 2007, Magnetic resonance imaging.
[57] N G Papadakis,et al. A comparative study of acquisition schemes for diffusion tensor imaging using MRI. , 1999, Journal of magnetic resonance.
[58] Konstantinos Arfanakis,et al. Diffusion tensor encoding schemes optimized for white matter fibers with selected orientations. , 2007, Magnetic resonance imaging.
[59] James C. Gee,et al. Spatial transformations of diffusion tensor magnetic resonance images , 2001, IEEE Transactions on Medical Imaging.
[60] B W Kreher,et al. Multitensor approach for analysis and tracking of complex fiber configurations , 2005, Magnetic resonance in medicine.
[61] H. Yamasue,et al. Voxel-based analysis of the diffusion tensor , 2010, Neuroradiology.
[62] L. Frank. Characterization of anisotropy in high angular resolution diffusion‐weighted MRI , 2002, Magnetic resonance in medicine.
[63] D L Parker,et al. Comparison of gradient encoding schemes for diffusion‐tensor MRI , 2001, Journal of magnetic resonance imaging : JMRI.
[64] V. Wedeen,et al. Fiber crossing in human brain depicted with diffusion tensor MR imaging. , 2000, Radiology.
[65] M. Hedehus,et al. In vivo mapping of the fast and slow diffusion tensors in human brain , 2002, Magnetic resonance in medicine.
[66] Dong Ik Kim,et al. Corpus callosal connection mapping using cortical gray matter parcellation and DT‐MRI , 2008, Human brain mapping.
[67] Mark W. Woolrich,et al. Advances in functional and structural MR image analysis and implementation as FSL , 2004, NeuroImage.
[68] Matthias Hofmann,et al. Diffusion Tensor Imaging in a Human PET/MR Hybrid System , 2010, Investigative radiology.
[69] Pratik Mukherjee,et al. Development and initial evaluation of 7-T q-ball imaging of the human brain. , 2008, Magnetic resonance imaging.
[70] P. Boesiger,et al. SENSE‐DTI at 3 T , 2004, Magnetic resonance in medicine.
[71] R. Meuli,et al. Diffusion Spectrum Imaging Shows the Structural Basis of Functional Cerebellar Circuits in the Human Cerebellum In Vivo , 2009, PloS one.
[72] J. Helpern,et al. MRI quantification of non‐Gaussian water diffusion by kurtosis analysis , 2010, NMR in biomedicine.
[73] I. Wilkinson,et al. Analysis of diffusion tensor magnetic resonance imaging data using principal component analysis. , 2003, Physics in medicine and biology.
[74] Peter Boesiger,et al. Resolving fiber crossing using advanced fast marching tractography based on diffusion tensor imaging , 2006, NeuroImage.
[75] John Ashburner,et al. Computational anatomy with the SPM software. , 2009, Magnetic resonance imaging.
[76] Ludovico Minati,et al. Biexponential and diffusional kurtosis imaging, and generalised diffusion-tensor imaging (GDTI) with rank-4 tensors: a study in a group of healthy subjects , 2007, Magnetic Resonance Materials in Physics, Biology and Medicine.
[77] T. Mareci,et al. Generalized diffusion tensor imaging and analytical relationships between diffusion tensor imaging and high angular resolution diffusion imaging , 2003, Magnetic resonance in medicine.
[78] Denis Le Bihan,et al. Looking into the functional architecture of the brain with diffusion MRI , 2003, Nature Reviews Neuroscience.
[79] P. Hagmann,et al. Mapping complex tissue architecture with diffusion spectrum magnetic resonance imaging , 2005, Magnetic resonance in medicine.
[80] Derek K. Jones,et al. RESTORE: Robust estimation of tensors by outlier rejection , 2005, Magnetic resonance in medicine.
[81] Arthur W. Toga,et al. Stereotaxic white matter atlas based on diffusion tensor imaging in an ICBM template , 2008, NeuroImage.
[82] D. Le Bihan,et al. Diffusion tensor imaging: Concepts and applications , 2001, Journal of magnetic resonance imaging : JMRI.
[83] S. Kumra,et al. Diffusion abnormalities in adolescents and young adults with a history of heavy cannabis use. , 2009, Journal of psychiatric research.
[84] M. Horsfield,et al. Optimal strategies for measuring diffusion in anisotropic systems by magnetic resonance imaging , 1999, Magnetic resonance in medicine.
[85] John S. Duncan,et al. Voxel-based diffusion tensor imaging in patients with mesial temporal lobe epilepsy and hippocampal sclerosis , 2008, NeuroImage.
[86] Jerry L. Prince,et al. Effects of diffusion weighting schemes on the reproducibility of DTI-derived fractional anisotropy, mean diffusivity, and principal eigenvector measurements at 1.5T , 2007, NeuroImage.
[87] Hiroshi Fukuda,et al. Decrease in glucose metabolism in frontal cortex associated with deterioration of microstructure of corpus callosum measured by diffusion tensor imaging in healthy elderly , 2008, Human brain mapping.
[88] A. Dale,et al. Age-related alterations in white matter microstructure measured by diffusion tensor imaging , 2005, Neurobiology of Aging.
[89] Christian Beaulieu,et al. Voxel based versus region of interest analysis in diffusion tensor imaging of neurodevelopment , 2007, NeuroImage.
[90] Daniel C Alexander,et al. Multiple‐Fiber Reconstruction Algorithms for Diffusion MRI , 2005, Annals of the New York Academy of Sciences.
[91] Anders M. Dale,et al. Automated white‐matter tractography using a probabilistic diffusion tensor atlas: Application to temporal lobe epilepsy , 2009, Human brain mapping.
[92] S. Maier,et al. Characterization of central nervous system structures by magnetic resonance diffusion anisotropy , 2004, Neurochemistry International.
[93] N. Makris,et al. High angular resolution diffusion imaging reveals intravoxel white matter fiber heterogeneity , 2002, Magnetic resonance in medicine.
[94] P. Ellen Grant,et al. Development of cerebral fiber pathways in cats revealed by diffusion spectrum imaging , 2010, NeuroImage.
[95] S. Wakana,et al. Fiber tract-based atlas of human white matter anatomy. , 2004, Radiology.
[96] M. Moseley,et al. Magnetic Resonance in Medicine 51:924–937 (2004) Characterizing Non-Gaussian Diffusion by Using Generalized Diffusion Tensors , 2022 .
[97] Timothy Edward John Behrens,et al. Non-invasive mapping of connections between human thalamus and cortex using diffusion imaging , 2003, Nature Neuroscience.
[98] D. Shen,et al. Spatial normalization of diffusion tensor fields , 2003, Magnetic resonance in medicine.
[99] D L Buckley,et al. Visualization of neural tissue water compartments using biexponential diffusion tensor MRI , 2001, Magnetic resonance in medicine.
[100] P. Basser,et al. Estimation of the effective self-diffusion tensor from the NMR spin echo. , 1994, Journal of magnetic resonance. Series B.
[101] Khader M Hasan,et al. Diffusion tensor‐based regional gray matter tissue segmentation using the international consortium for brain mapping atlases , 2011, Human brain mapping.
[102] V. Haughton,et al. Independent component analysis applied to diffusion tensor MRI , 2002, Magnetic resonance in medicine.
[103] Wang Zhan,et al. In-vivo investigation of the human cingulum bundle using the optimization of MR diffusion spectrum imaging. , 2010, European journal of radiology.
[104] L. Frank. Anisotropy in high angular resolution diffusion‐weighted MRI , 2001, Magnetic resonance in medicine.
[105] Thomas E. Nichols,et al. Acquisition and voxelwise analysis of multi-subject diffusion data with Tract-Based Spatial Statistics , 2007, Nature Protocols.
[106] S. Arridge,et al. Detection and modeling of non‐Gaussian apparent diffusion coefficient profiles in human brain data , 2002, Magnetic resonance in medicine.
[107] D. Tuch. Q‐ball imaging , 2004, Magnetic resonance in medicine.
[108] Roland Bammer,et al. Limitations of apparent diffusion coefficient‐based models in characterizing non‐gaussian diffusion , 2005, Magnetic resonance in medicine.
[109] A. Anderson. Theoretical analysis of the effects of noise on diffusion tensor imaging , 2001, Magnetic resonance in medicine.
[110] Mariano Rivera,et al. Diffusion Basis Functions Decomposition for Estimating White Matter Intravoxel Fiber Geometry , 2007, IEEE Transactions on Medical Imaging.
[111] Rainer Goebel,et al. High-resolution diffusion tensor imaging and tractography of the human optic chiasm at 9.4 T , 2008, NeuroImage.
[112] Arthur W. Toga,et al. Atlas-guided tract reconstruction for automated and comprehensive examination of the white matter anatomy , 2010, NeuroImage.
[113] Khader M Hasan,et al. Human brain atlas‐based volumetry and relaxometry: Application to healthy development and natural aging , 2010, Magnetic resonance in medicine.
[114] Gareth J. Barker,et al. Optimal imaging parameters for fiber-orientation estimation in diffusion MRI , 2005, NeuroImage.
[115] Stephen M Smith,et al. Fast robust automated brain extraction , 2002, Human brain mapping.
[116] M. Raichle,et al. Tracking neuronal fiber pathways in the living human brain. , 1999, Proceedings of the National Academy of Sciences of the United States of America.
[117] C. Beaulieu,et al. The basis of anisotropic water diffusion in the nervous system – a technical review , 2002, NMR in biomedicine.
[118] Ludovico Minati,et al. Physical foundations, models, and methods of diffusion magnetic resonance imaging of the brain: A review , 2007 .
[119] Rachid Deriche,et al. Mathematical methods for diffusion MRI processing , 2009, NeuroImage.
[120] O. Abe,et al. Quantitative diffusion tensor analysis using multiple tensor ellipsoids model and tensor field interpolation at fiber crossing. , 2008, Academic radiology.
[121] Jerry L Prince,et al. Effects of signal‐to‐noise ratio on the accuracy and reproducibility of diffusion tensor imaging–derived fractional anisotropy, mean diffusivity, and principal eigenvector measurements at 1.5T , 2007, Journal of magnetic resonance imaging : JMRI.
[122] A. Connelly,et al. Anisotropic noise propagation in diffusion tensor MRI sampling schemes , 2003, Magnetic resonance in medicine.
[123] A. Alexander,et al. Hybrid Diffusion Imaging (HYDI) , 2006, 2006 International Conference of the IEEE Engineering in Medicine and Biology Society.
[124] Daniel C Alexander,et al. Probabilistic anatomical connectivity derived from the microscopic persistent angular structure of cerebral tissue , 2005, Philosophical Transactions of the Royal Society B: Biological Sciences.
[125] Geoffrey J M Parker,et al. A framework for a streamline‐based probabilistic index of connectivity (PICo) using a structural interpretation of MRI diffusion measurements , 2003, Journal of magnetic resonance imaging : JMRI.
[126] E. Akkerman,et al. Efficient measurement and calculation of MR diffusion anisotropy images using the Platonic variance method , 2003, Magnetic resonance in medicine.
[127] P. Basser,et al. Diffusion tensor MR imaging of the human brain. , 1996, Radiology.
[128] S Ekholm,et al. Effects of number of diffusion gradient directions on derived diffusion tensor imaging indices in human brain. , 2006, AJNR. American journal of neuroradiology.
[129] Aaron Carass,et al. Erratum to: The Java Image Science Toolkit (JIST) for Rapid Prototyping and Publishing of Neuroimaging Software , 2010, Neuroinformatics.
[130] Peter Boesiger,et al. Combining fMRI and DTI: A framework for exploring the limits of fMRI-guided DTI fiber tracking and for verifying DTI-based fiber tractography results , 2008, NeuroImage.
[131] Baba C. Vemuri,et al. A Unified Computational Framework for Deconvolution to Reconstruct Multiple Fibers From Diffusion Weighted MRI , 2007, IEEE Transactions on Medical Imaging.
[132] J. Helpern,et al. Diffusional kurtosis imaging: The quantification of non‐gaussian water diffusion by means of magnetic resonance imaging , 2005, Magnetic resonance in medicine.
[133] D. Pandya,et al. Association fibre pathways of the brain: parallel observations from diffusion spectrum imaging and autoradiography. , 2007, Brain : a journal of neurology.
[134] P. Grenier,et al. MR imaging of intravoxel incoherent motions: application to diffusion and perfusion in neurologic disorders. , 1986, Radiology.
[135] Alan Barnett,et al. Theory of Q‐ball imaging redux: Implications for fiber tracking , 2009, Magnetic resonance in medicine.
[136] F. Hoogenraad,et al. Multitensor Tractography Enables Better Depiction of Motor Pathways: Initial Clinical Experience Using Diffusion-Weighted MR Imaging with Standard b-Value , 2007, American Journal of Neuroradiology.
[137] K. Hasan,et al. Quantification of the spatiotemporal microstructural organization of the human brain association, projection and commissural pathways across the lifespan using diffusion tensor tractography , 2010, Brain Structure and Function.
[138] P. Basser. Diffusion MRI: From Quantitative Measurement to In vivo Neuroanatomy , 2009 .
[139] Paul M. Thompson,et al. How does angular resolution affect diffusion imaging measures? , 2010, NeuroImage.
[140] S S Kollias,et al. Preliminary Experience with Visualization of Intracortical Fibers by Focused High-Resolution Diffusion Tensor Imaging , 2008, American Journal of Neuroradiology.
[141] Daniel Rueckert,et al. Tract-based spatial statistics: Voxelwise analysis of multi-subject diffusion data , 2006, NeuroImage.
[142] A. Dale,et al. NeurotechniqueWhole Brain Segmentation : Automated Labeling of Neuroanatomical Structures , 2002 .
[143] Timothy Edward John Behrens,et al. Diffusion MRI : from quantitative measurement to in vivo neuroanatomy , 2014 .
[144] Larry A. Kramer,et al. Feasibility of prefronto-caudate pathway tractography using high resolution diffusion tensor tractography data at 3T , 2010, Journal of Neuroscience Methods.
[145] Susumu Mori,et al. Fiber tracking: principles and strategies – a technical review , 2002, NMR in biomedicine.
[146] Carl-Fredrik Westin,et al. Geometrically constrained two-tensor model for crossing tracts in DWI. , 2006, Magnetic resonance imaging.
[147] R W Cox,et al. AFNI: software for analysis and visualization of functional magnetic resonance neuroimages. , 1996, Computers and biomedical research, an international journal.