Shared random-effect models for the joint analysis of longitudinal and time-to-event data: application to the prediction of prostate cancer recurrence

In the last decade, joint modeling research has expanded very rapidly in biostatistics and medical research. This type of models enables the simultaneous study of a longitudinal marker and a correlated time-to-event. Among them, the shared random-effect models that define a mixed model for the longitudinal marker and a survival model for the time-to-event including characteristics of the mixed model as covariates received the main interest. Indeed, they extend naturally the survival model with time-dependent covariates and offer a flexible framework to explore the link between a longitudinal biomarker and a risk of event. The objective of this paper is to briefly review the shared random-effect model methodology and detail its implementation and evaluation through a real example from the study of prostate cancer progression after a radiation therapy. In particular, different specifications of the dependency between the longitudinal biomarker, the prostate-specific antigen (PSA), and the risk of clinical recurrence are investigated to better understand the link between the PSA dynamics and the risk of clinical recurrence. These different joint models are compared in terms of goodness-of-fit and adequation to the joint model assumptions but also in terms of predictive accuracy using the expected prognostic cross-entropy. Indeed, in addition to better understand the link between the PSA dynamics and the risk of clinical recurrence, the perspective in prostate cancer studies is to provide dynamic prognostic tools of clinical recurrence based on the biomarker history.

[1]  Thomas A Gerds,et al.  Efron‐Type Measures of Prediction Error for Survival Analysis , 2007, Biometrics.

[2]  J. Dartigues,et al.  Modélisation conjointe de données longitudinales quantitatives et de délais censurés , 2004 .

[3]  M. Wulfsohn,et al.  Modeling the Relationship of Survival to Longitudinal Data Measured with Error. Applications to Survival and CD4 Counts in Patients with AIDS , 1995 .

[4]  Cécile Proust-Lima,et al.  Joint latent class models for longitudinal and time-to-event data: A review , 2014, Statistical methods in medical research.

[5]  Yingye Zheng,et al.  Prospective Accuracy for Longitudinal Markers , 2007, Biometrics.

[6]  Joseph G Ibrahim,et al.  Basic concepts and methods for joint models of longitudinal and survival data. , 2010, Journal of clinical oncology : official journal of the American Society of Clinical Oncology.

[7]  Emmanuel Lesaffre,et al.  On the effect of the number of quadrature points in a logistic random effects model: an example , 2001 .

[8]  Menggang Yu,et al.  JOINT LONGITUDINAL-SURVIVAL-CURE MODELS AND THEIR APPLICATION TO PROSTATE CANCER , 2004 .

[9]  Joseph G Ibrahim,et al.  Joint Models for Multivariate Longitudinal and Multivariate Survival Data , 2006, Biometrics.

[10]  Simon G Thompson,et al.  Joint modelling of longitudinal and time-to-event data with application to predicting abdominal aortic aneurysm growth and rupture , 2011, Biometrical journal. Biometrische Zeitschrift.

[11]  John D. Kalbfleisch,et al.  The Statistical Analysis of Failure Data , 1986, IEEE Transactions on Reliability.

[12]  M. Schumacher,et al.  Consistent Estimation of the Expected Brier Score in General Survival Models with Right‐Censored Event Times , 2006, Biometrical journal. Biometrische Zeitschrift.

[13]  Martin Schumacher,et al.  Measures of prediction error for survival data with longitudinal covariates , 2011, Biometrical journal. Biometrische Zeitschrift.

[14]  D. Zeng,et al.  Asymptotic results for maximum likelihood estimators in joint analysis of repeated measurements and survival time , 2005, math/0602240.

[15]  J. Kalbfleisch,et al.  The Statistical Analysis of Failure Time Data , 1980 .

[16]  Benoit Liquet,et al.  Choice of Prognostic Estimators in Joint Models by Estimating Differences of Expected Conditional Kullback–Leibler Risks , 2012, Biometrics.

[17]  S. Ratcliffe,et al.  Joint Modeling of Longitudinal and Survival Data via a Common Frailty , 2004, Biometrics.

[18]  Cécile Proust-Lima,et al.  Development and validation of a dynamic prognostic tool for prostate cancer recurrence using repeated measures of posttreatment PSA: a joint modeling approach. , 2009, Biostatistics.

[19]  Robin Henderson,et al.  Identification and efficacy of longitudinal markers for survival. , 2002, Biostatistics.

[20]  Dimitris Rizopoulos,et al.  A Bayesian semiparametric multivariate joint model for multiple longitudinal outcomes and a time‐to‐event , 2011, Statistics in medicine.

[21]  J. Ware,et al.  Random-effects models for longitudinal data. , 1982, Biometrics.

[22]  Yan Wang,et al.  Jointly Modeling Longitudinal and Event Time Data With Application to Acquired Immunodeficiency Syndrome , 2001 .

[23]  D.,et al.  Regression Models and Life-Tables , 2022 .

[24]  Dimitris Rizopoulos,et al.  Dynamic Predictions and Prospective Accuracy in Joint Models for Longitudinal and Time‐to‐Event Data , 2011, Biometrics.

[25]  Xin Huang,et al.  A general joint model for longitudinal measurements and competing risks survival data with heterogeneous random effects , 2011, Lifetime data analysis.

[26]  Jeremy M G Taylor,et al.  The joint modeling of a longitudinal disease progression marker and the failure time process in the presence of cure. , 2002, Biostatistics.

[27]  Joseph G. Ibrahim,et al.  Bayesian Survival Analysis , 2004 .

[28]  Menggang Yu,et al.  Individual Prediction in Prostate Cancer Studies Using a Joint Longitudinal Survival–Cure Model , 2008 .

[29]  Modélisation conjointe de données longitudinales et de durées de vie , 2002 .

[30]  Cécile Proust-Lima,et al.  Determinants of change in prostate-specific antigen over time and its association with recurrence after external beam radiation therapy for prostate cancer in five large cohorts. , 2008, International journal of radiation oncology, biology, physics.

[31]  Dimitris Rizopoulos,et al.  JM: An R package for the joint modelling of longitudinal and time-to-event data , 2010 .

[32]  C. McCulloch,et al.  Latent Class Models for Joint Analysis of Longitudinal Biomarker and Event Process Data , 2002 .

[33]  Keith R Abrams,et al.  Flexible parametric joint modelling of longitudinal and survival data , 2012, Statistics in medicine.

[34]  D. Thomas,et al.  Simultaneously modelling censored survival data and repeatedly measured covariates: a Gibbs sampling approach. , 1996, Statistics in medicine.

[35]  R Henderson,et al.  Joint modelling of longitudinal measurements and event time data. , 2000, Biostatistics.

[36]  Bradley P Carlin,et al.  Separate and Joint Modeling of Longitudinal and Event Time Data Using Standard Computer Packages , 2004 .

[37]  Rizopoulos Dimitris,et al.  Joint Modeling of Longitudinal and Time-to-Event Data , 2014 .

[38]  Wei Liu,et al.  Analysis of Longitudinal and Survival Data: Joint Modeling, Inference Methods, and Issues , 2012 .

[39]  M. Wulfsohn,et al.  A joint model for survival and longitudinal data measured with error. , 1997, Biometrics.

[40]  Geert Verbeke,et al.  Fully exponential Laplace approximations for the joint modelling of survival and longitudinal data , 2009 .

[41]  Dimitris Rizopoulos,et al.  Fast fitting of joint models for longitudinal and event time data using a pseudo-adaptive Gaussian quadrature rule , 2012, Comput. Stat. Data Anal..