Erratum to: ω-Amidase: an underappreciated, but important enzyme in l-glutamine and l-asparagine metabolism; relevance to sulfur and nitrogen metabolism, tumor biology and hyperammonemic diseases

In mammals, two major routes exist for the metabolic conversion of l-glutamine to α-ketoglutarate. The most widely studied pathway involves the hydrolysis of l-glutamine to l-glutamate catalyzed by glutaminases, followed by the conversion of l-glutamate to α-ketoglutarate by the action of an l-glutamate-linked aminotransferase or via the glutamate dehydrogenase reaction. However, another major pathway exists in mammals for the conversion of l-glutamine to α-ketoglutarate (the glutaminase II pathway) in which l-glutamine is first transaminated to α-ketoglutaramate (KGM) followed by hydrolysis of KGM to α-ketoglutarate and ammonia catalyzed by an amidase known as ω-amidase. In mammals, the glutaminase II pathway is present in both cytosolic and mitochondrial compartments and is most prominent in liver and kidney. Similarly, two routes exist for the conversion of l-asparagine to oxaloacetate. In the most extensively studied pathway, l-asparagine is hydrolyzed to l-aspartate by the action of asparaginase, followed by transamination of l-aspartate to oxaloacetate. However, another pathway also exists for the conversion of l-asparagine to oxaloacetate (the asparaginase II pathway). In this pathway, l-asparagine is first transaminated to α-ketosuccinamate (KSM), followed by hydrolysis of KSM to oxaloacetate by the action of ω-amidase. One advantage of both the glutaminase II and the asparaginase II pathways is that they are irreversible, and thus are important in anaplerosis by shuttling 5-C (α-ketoglutarate) and 4-C (oxaloacetate) units into the TCA cycle. In this review, we briefly mention the importance of the glutaminase II and asparaginase II pathways in microorganisms and plants. However, the major emphasis of the review is related to the importance of these pathways (especially the common enzyme component of both pathways—ω-amidase) in nitrogen and sulfur metabolism in mammals and as a source of anaplerotic carbon moieties in rapidly dividing cells. The review also discusses a potential dichotomous function of ω-amidase as having a role in tumor progression. Finally, the possible role of KGM as a biomarker for hyperammonemic diseases is discussed.

[1]  V. E. Price,et al.  Desamidation of amino acid amides in rat-liver extracts of varying concentrations. , 1947, Journal of the National Cancer Institute.

[2]  C. Carter,et al.  Acceleration of enzymatic desamidation of glutamine by several inorganic anions. , 1947, Journal of the National Cancer Institute.

[3]  V. E. Price,et al.  Studies on the effect of pyruvate on the desamidation of glutamine, asparagine, and related compounds. , 1947, Journal of the National Cancer Institute.

[4]  M. Errera,et al.  Desamidation of glutamine and asparagine in normal and neoplastic hepatic tissues. , 1947, Journal of the National Cancer Institute.

[5]  J. Greenstein,et al.  Enzymatic desamidation of glutamine in the presence of pyruvate furnished by concomitant reactions. , 1947, Journal of the National Cancer Institute.

[6]  M. Errera,et al.  Phosphate-activated glutaminase in kidney and other tissues. , 1949, The Journal of biological chemistry.

[7]  V. E. Price,et al.  α-KETO ACID-ACTIVATED GLUTAMINASE AND ASPARAGINASE , 1949 .

[8]  M. Errera Liver glutaminases. , 1949, The Journal of biological chemistry.

[9]  P. Fraser,et al.  Transamination and associated deamidation of asparagine and glutamine. , 1952, The Journal of biological chemistry.

[10]  A. Meister Preparation of enzymatic reactions of the keto analogues of asparagine and glutamine. , 1953, The Journal of biological chemistry.

[11]  A. Meister,et al.  Studies on the mechanism of glutamine synthesis; isolation and properties of the enzyme from sheep brain. , 1962, Biochemistry.

[12]  U. Maitra,et al.  PURIFICATION AND PROPERTIES OF RAT LIVER 2-KETO-4-HYDROXYGLUTARATE ALDOLASE. , 1964, The Journal of biological chemistry.

[13]  L. Hersh Rat liver ι-amidase. Purification and properties , 1971 .

[14]  J. Miller,et al.  Purification, properties, and identity of liver mitochondrial tyrosine aminotransferase. , 1971, The Journal of biological chemistry.

[15]  A. Meister,et al.  Structure of the dimeric -keto acid analogue of asparagine. , 1971, The Journal of biological chemistry.

[16]  A. Meister,et al.  Regulation of rat liver glutamine synthetase: activation by alpha-ketoglutarate and inhibition by glycine, alanine, and carbamyl phosphate. , 1971, Proceedings of the National Academy of Sciences of the United States of America.

[17]  L. Hersh Rat liver -amidase. Kinetic evidence for an acyl-enzyme intermediate. , 1972, Biochemistry.

[18]  J. L. Cooper,et al.  Isolation and properties of highly purified glutamine transaminase. , 1972, Biochemistry.

[19]  J. Ottaway The concentration of asparagine in the tissues of rats treated with growth hormone. , 1972, The Biochemical journal.

[20]  E Shrawder,et al.  Evidence of phenylalanine transaminase activity in the isoenzymes of aspartate transaminase. , 1972, The Journal of biological chemistry.

[21]  F. Plum,et al.  Alpha-ketoglutaramate, a neurotoxic agent in hepatic coma. , 1973, Transactions of the Association of American Physicians.

[22]  D. L. Frankel,et al.  Concentrations of asparagine in tissues of prepubertal rats after enzymic or dietary depletion of asparagine. , 1973, The Biochemical journal.

[23]  A. Meister,et al.  Isolation and properties of a new glutamine transaminase from rat kidney. , 1974, The Journal of biological chemistry.

[24]  A. Meister,et al.  Identification of α-Ketoglutaramate in Rat Liver, Kidney, and Brain RELATIONSHIP TO GLUTAMINE TRANSAMINASE AND ω-AMIDASE ACTIVITIES , 1974 .

[25]  F. Plum,et al.  α-Ketoglutaramate: Increased Concentrations in the Cerebrospinal Fluid of Patients in Hepatic Coma , 1974, Science.

[26]  M. Tobes,et al.  L-kynurenine aminotransferase and L-α-aminoadipate aminotransferase. I. Evidence for identity , 1975 .

[27]  J. Streeter Asparaginase and asparagine transaminase in soybean leaves and root nodules. , 1977, Plant physiology.

[28]  M. Tobes,et al.  Alpha-Aminoadipate aminotransferase and kynurenine aminotransferase. Purification, characterization, and further evidence for identity. , 1977, The Journal of biological chemistry.

[29]  H. G. Windmueller,et al.  Phosphate-dependent glutaminase of small intestine: localization and role in intestinal glutamine metabolism. , 1977, Archives of biochemistry and biophysics.

[30]  K. E. Richardson,et al.  The pathways of oxalate formation from phenylalanine, tyrosine, tryptophan and ascorbic acid in the rat. , 1977, Biochimica et biophysica acta.

[31]  M. Cornblath,et al.  Reciprocal regulation of glucose and glutamine utilization by cultured human diploid fibroblasts , 1978, Journal of cellular physiology.

[32]  K. E. Richardson,et al.  The formation of oxalate from hydroxypyruvate, serine, glycolate and glyoxylate in the rat. , 1978, Biochimica et biophysica acta.

[33]  T. Patel,et al.  The effect of the monocarboxylate translocator inhibitor, α-cyanocinnamate, on the oxidation of branched chain α-keto acids in rat liver , 1980 .

[34]  A. Meister,et al.  Comparative studies of glutamine transaminases from rat tissues , 1981 .

[35]  R. Smith,et al.  Methionine synthesis from 5'-methylthioadenosine in rat liver. , 1981, The Journal of biological chemistry.

[36]  W. Roediger Utilization of nutrients by isolated epithelial cells of the rat colon. , 1982, Gastroenterology.

[37]  J. W. Campbell,et al.  Characterization of glutamine synthetase from avian liver mitochondria. , 1982, The International journal of biochemistry.

[38]  K. Joy,et al.  Utilization of the amide groups of asparagine and 2-hydroxysuccinamic Acid by young pea leaves. , 1984, Plant physiology.

[39]  L. Christa,et al.  Salvage of 5'-deoxy-methylthioadenosine into purines and methionine by lymphoid cells and inhibition of cell proliferation. , 1984, Biochimica et biophysica acta.

[40]  K. Joy,et al.  Amino Acid metabolism in pea leaves : utilization of nitrogen from amide and amino groups of [N]asparagine. , 1984, Plant physiology.

[41]  A. Meister,et al.  [45] α-keto acid ω-amidase from rat liver , 1985 .

[42]  S. Schuster,et al.  Rat liver 4-hydroxy-2-ketoglutarate aldolase: purification and kinetic characterization. , 1985, Archives of biochemistry and biophysics.

[43]  D. Häussinger,et al.  Glutamine metabolism in isolated perfused rat liver. The transamination pathway. , 1985, Biological chemistry Hoppe-Seyler.

[44]  K. Joy,et al.  Role of asparagine in the photorespiratory nitrogen metabolism of pea leaves. , 1985, Plant physiology.

[45]  R. Byrd,et al.  A purified cysteine conjugate beta-lyase from rat kidney cytosol. Requirement for an alpha-keto acid or an amino acid oxidase for activity and identity with soluble glutamine transaminase K. , 1986, The Journal of biological chemistry.

[46]  M. Takeda,et al.  Identity of rat liver mitochondrial asparagine-pyruvate transaminase with phenylalanine-pyruvate transaminase. , 1986, Enzyme.

[47]  R. D. Steele Blood-brain barrier transport of the alpha-keto acid analogs of amino acids. , 1986, Federation proceedings.

[48]  D. Matthews,et al.  Glutamine and glutamate kinetics in humans. , 1986, The American journal of physiology.

[49]  J. Kelleher,et al.  Substrate metabolism of isolated jejunal epithelium: conservation of three-carbon units. , 1986, The American journal of physiology.

[50]  A. Meister,et al.  Fluorometric determination of α-ketosuccinamic acid in rat tissues , 1987 .

[51]  S. Fujiwara,et al.  Identification of mammalian aminotransferases utilizing glyoxylate or pyruvate as amino acceptor. Peroxisomal and mitochondrial asparagine aminotransferase. , 1988, Journal of Biological Chemistry.

[52]  S. Schuster,et al.  Asparagine catabolism in rat liver mitochondria. , 1989, Archives of biochemistry and biophysics.

[53]  R. Schwarcz,et al.  Measurement of Rat Brain Kynurenine Aminotransferase at Physiological Kynurenine Concentrations , 1991, Journal of neurochemistry.

[54]  M. Fontana,et al.  Sulfur-containing cyclic ketimines and imino acids. A novel family of endogenous products in the search for a role. , 1991, European journal of biochemistry.

[55]  Kynurenine aminotransferase activity in human liver: identity with human hepatic C-S lyase activity and a physiological role for this enzyme. , 1992, Toxicology letters.

[56]  E. Lock,et al.  Isolation and expression of a cDNA coding for rat kidney cytosolic cysteine conjugate beta-lyase. , 1993, Molecular pharmacology.

[57]  O. Mamer,et al.  α-Keto and α-Hydroxy Branched-Chain Acid Interrelationships in Normal Humans , 1993 .

[58]  P. Malherbe,et al.  Cloning and Characterization of a Soluble Kynurenine Aminotransferase from Rat Brain: Identity with Kidney Cysteine Conjugate β‐Lyase , 1995 .

[59]  P. Malherbe,et al.  Identification of a mitochondrial form of kynurenine aminotransferase/glutamine transaminase K from rat brain , 1995, FEBS letters.

[60]  J. Wray,et al.  The Methionine Salvage Pathway in Klebsiella pneumoniae and Rat Liver , 1995, The Journal of Biological Chemistry.

[61]  P. Calder,et al.  Glutamine requirement of proliferating T lymphocytes. , 1997, Nutrition.

[62]  V. Kapoor,et al.  Reduced kynurenine aminotransferase‐I activity in SHR rats may be due to lack of KAT‐Ib activity , 1998, Neuroreport.

[63]  N. Vermeulen,et al.  Bioactivation of selenocysteine Se-conjugates by a highly purified rat renal cysteine conjugate beta-lyase/glutamine transaminase K. , 2000, The Journal of pharmacology and experimental therapeutics.

[64]  M. Takemura,et al.  Mechanism of increases in L-kynurenine and quinolinic acid in renal insufficiency. , 2000, American journal of physiology. Renal physiology.

[65]  C. Brenner,et al.  The nitrilase superfamily: classification, structure and function , 2001, Genome Biology.

[66]  P. Schofield,et al.  A Missense Mutation in Kynurenine Aminotransferase-1 in Spontaneously Hypertensive Rats* , 2002, The Journal of Biological Chemistry.

[67]  C. Brenner Catalysis in the nitrilase superfamily. , 2002, Current opinion in structural biology.

[68]  R. Schwarcz,et al.  Manipulation of Brain Kynurenines: Glial Targets, Neuronal Effects, and Clinical Opportunities , 2002, Journal of Pharmacology and Experimental Therapeutics.

[69]  L. Benatti,et al.  Tissue expression and translational control of rat kynurenine aminotransferase/glutamine transaminase K mRNAs. , 2003, Biochimica et biophysica acta.

[70]  J. Myung,et al.  Deranged hypothetical proteins Rik protein, Nit protein 2 and mitochondrial inner membrane protein, Mitofilin, in fetal Down syndrome brain. , 2003, Cellular and molecular biology.

[71]  Arthur J. L. Cooper The role of glutamine transaminase K (GTK) in sulfur and α-keto acid metabolism in the brain, and in the possible bioactivation of neurotoxicants , 2004, Neurochemistry International.

[72]  Jianyong Li,et al.  pH dependence, substrate specificity and inhibition of human kynurenine aminotransferase I. , 2004, European journal of biochemistry.

[73]  R. Curi,et al.  Glucose and glutamine utilization by rat lymphocytes, monocytes and neutrophils in culture: a comparative study , 2004, Cell biochemistry and function.

[74]  Michael Y. Galperin,et al.  'Conserved hypothetical' proteins: prioritization of targets for experimental study. , 2004, Nucleic acids research.

[75]  K. Williams,et al.  Differential protein expression in MCF7 breast cancer cells transfected with ErbB2, neomycin resistance and luciferase plus yellow fluorescent protein , 2004, Proteomics.

[76]  J. Rush,et al.  Immunoaffinity profiling of tyrosine phosphorylation in cancer cells , 2005, Nature Biotechnology.

[77]  D. Iliopoulos,et al.  Biological Functions of Mammalian Nit1, the Counterpart of the Invertebrate NitFhit Rosetta Stone Protein, a Possible Tumor Suppressor* , 2006, Journal of Biological Chemistry.

[78]  E. Struys D-2-Hydroxyglutaric aciduria: Unravelling the biochemical pathway and the genetic defect , 2006, Journal of Inherited Metabolic Disease.

[79]  R. Schwarcz,et al.  Mitochondrial aspartate aminotransferase: a third kynurenate‐producing enzyme in the mammalian brain , 2007, Journal of neurochemistry.

[80]  Suresh Mathivanan,et al.  Global proteomic profiling of phosphopeptides using electron transfer dissociation tandem mass spectrometry , 2007, Proceedings of the National Academy of Sciences.

[81]  C. Chien,et al.  Growth inhibitory effect of the human NIT2 gene and its allelic imbalance in cancers , 2007, The FEBS journal.

[82]  L. Wessjohann,et al.  Selenium in chemistry and biochemistry in comparison to sulfur , 2007, Biological chemistry.

[83]  Laura A. Sullivan,et al.  Global Survey of Phosphotyrosine Signaling Identifies Oncogenic Kinases in Lung Cancer , 2007, Cell.

[84]  R. Schwarcz,et al.  Curiosity to kill the KAT (kynurenine aminotransferase): structural insights into brain kynurenic acid synthesis. , 2008, Current opinion in structural biology.

[85]  R. Stevens,et al.  Functional proteomic and structural insights into molecular recognition in the nitrilase family enzymes. , 2008, Biochemistry.

[86]  D. Tagle,et al.  Substrate specificity and structure of human aminoadipate aminotransferase/kynurenine aminotransferase II. , 2008, Bioscience reports.

[87]  M. Moyer,et al.  The response of human colonocytes to folate deficiency in vitro: functional and proteomic analyses. , 2008, Journal of proteome research.

[88]  E. Schaftingen,et al.  l-2-Hydroxyglutaric aciduria, a disorder of metabolite repair , 2009, Journal of Inherited Metabolic Disease.

[89]  Tao Cai,et al.  Biochemical and Structural Properties of Mouse Kynurenine Aminotransferase III , 2008, Molecular and Cellular Biology.

[90]  A. Danchin,et al.  The methionine salvage pathway , 2009 .

[91]  M. Veiga-da-Cunha,et al.  Molecular identification of omega-amidase, the enzyme that is functionally coupled with glutamine transaminases, as the putative tumor suppressor Nit2. , 2009, Biochimie.

[92]  K. Huebner,et al.  Identification of the putative tumor suppressor Nit2 as omega-amidase, an enzyme metabolically linked to glutamine and asparagine transamination. , 2009, Biochimie.

[93]  Arthur J. L. Cooper,et al.  Assay and purification of omega-amidase/Nit2, a ubiquitously expressed putative tumor suppressor, that catalyzes the deamidation of the alpha-keto acid analogues of glutamine and asparagine. , 2009, Analytical biochemistry.

[94]  S. Duthie Folate and cancer: how DNA damage, repair and methylation impact on colon carcinogenesis , 2011, Journal of Inherited Metabolic Disease.

[95]  Patrick S. Callery,et al.  Cysteine S-conjugate β-lyases: important roles in the metabolism of naturally occurring sulfur and selenium-containing compounds, xenobiotics and anticancer agents , 2011, Amino Acids.

[96]  J. Erickson,et al.  Glutaminase: A Hot Spot For Regulation Of Cancer Cell Metabolism? , 2010, Oncotarget.

[97]  B. Maranda,et al.  Evidence for genetic heterogeneity in D‐2‐hydroxyglutaric aciduria , 2010, Human mutation.

[98]  R. Schwarcz,et al.  Reduction of Endogenous Kynurenic Acid Formation Enhances Extracellular Glutamate, Hippocampal Plasticity, and Cognitive Behavior , 2010, Neuropsychopharmacology.

[99]  E. Zrenner,et al.  Kynurenic acid and kynurenine aminotransferases in retinal aging and neurodegeneration , 2011, Pharmacological reports : PR.

[100]  Xueyuan Bai,et al.  Bioinformatics Analysis of Proteomic Profiles During the Process of Anti-Thy1 Nephritis* , 2011, Molecular & Cellular Proteomics.

[101]  M. Mihăşan,et al.  Homologous gene clusters of nicotine catabolism, including a new ω-amidase for α-ketoglutaramate, in species of three genera of Gram-positive bacteria. , 2011, Research in microbiology.

[102]  Arthur J. L. Cooper,et al.  Urinary 2-hydroxy-5-oxoproline, the lactam form of α-ketoglutaramate, is markedly increased in urea cycle disorders , 2011, Analytical and bioanalytical chemistry.

[103]  R. Schwarcz,et al.  Impaired kynurenine pathway metabolism in the prefrontal cortex of individuals with schizophrenia. , 2011, Schizophrenia bulletin.

[104]  Jin Sun,et al.  Hits, Fhits and Nits: beyond enzymatic function. , 2011, Advances in enzyme regulation.

[105]  Arthur J. L. Cooper,et al.  A GC/MS-based metabolomic approach for diagnosing citrin deficiency , 2011, Analytical and bioanalytical chemistry.

[106]  R. Montioli,et al.  The N-terminal extension is essential for the formation of the active dimeric structure of liver peroxisomal alanine:glyoxylate aminotransferase. , 2012, The international journal of biochemistry & cell biology.

[107]  E. Schaftingen,et al.  Metabolite proofreading, a neglected aspect of intermediary metabolism , 2013, Journal of Inherited Metabolic Disease.

[108]  S. Niclou,et al.  Colorectal cancer derived organotypic spheroids maintain essential tissue characteristics but adapt their metabolism in culture , 2014, Proteome Science.

[109]  Carole L. Linster,et al.  Metabolite damage and its repair or pre-emption. , 2013, Nature chemical biology.

[110]  R. Schwarcz,et al.  Targeting kynurenine aminotransferase II in psychiatric diseases: promising effects of an orally active enzyme inhibitor. , 2014, Schizophrenia bulletin.

[111]  Arthur J. L. Cooper,et al.  Role of Glutamine Transaminases in Nitrogen, Sulfur, Selenium, and 1-Carbon Metabolism , 2014 .

[112]  R. Deberardinis,et al.  Mechanism by which a recently discovered allosteric inhibitor blocks glutamine metabolism in transformed cells , 2014, Proceedings of the National Academy of Sciences.

[113]  R. Butterworth Pathophysiology of brain dysfunction in hyperammonemic syndromes: The many faces of glutamine. , 2014, Molecular genetics and metabolism.

[114]  A. Artigues,et al.  Kynurenine Aminotransferase III and Glutamine Transaminase L Are Identical Enzymes that have Cysteine S-Conjugate β-Lyase Activity and Can Transaminate l-Selenomethionine* , 2014, The Journal of Biological Chemistry.

[115]  F. Marsolais,et al.  Identification and characterization of omega-amidase as an enzyme metabolically linked to asparagine transamination in Arabidopsis. , 2014, Phytochemistry.

[116]  Hai Yan,et al.  Cancer-associated Isocitrate Dehydrogenase 1 (IDH1) R132H Mutation and d-2-Hydroxyglutarate Stimulate Glutamine Metabolism under Hypoxia* , 2014, The Journal of Biological Chemistry.

[117]  R. Chai,et al.  Downregulation of NIT2 inhibits colon cancer cell proliferation and induces cell cycle arrest through the caspase-3 and PARP pathways. , 2015, International journal of molecular medicine.

[118]  R. Mullen,et al.  Evidence that glutamine transaminase and omega-amidase potentially act in tandem to close the methionine salvage cycle in bacteria and plants. , 2015, Phytochemistry.

[119]  D. Rakheja,et al.  Increased plasma d-2-hydroxyglutarate in isocitrate dehydrogenase 2-mutated blastic plasmacytoid dendritic cell neoplasm. , 2015, Human Pathology.

[120]  S. Mittelman,et al.  Glutaminase activity determines cytotoxicity of L-asparaginases on most leukemia cell lines. , 2015, Leukemia research.

[121]  K. Hensley,et al.  Alternative functions of the brain transsulfuration pathway represent an underappreciated aspect of brain redox biochemistry with significant potential for therapeutic engagement. , 2015, Free radical biology & medicine.

[122]  Boris Ratnikov,et al.  Glutamate and asparagine cataplerosis underlie glutamine addiction in melanoma , 2015, Oncotarget.