Variability Assessment of Aromatic Rice Germplasm by Pheno-Genomic traits and Population Structure Analysis

[1]  B. Pittendrigh,et al.  Diversity and population structure of red rice germplasm in Bangladesh , 2018, PloS one.

[2]  R. Sarma,et al.  Population Structure and Marker-Trait Association in Indigenous Aromatic Rice , 2017 .

[3]  Sundeep Kumar,et al.  Genetic diversity trend in Indian rice varieties: an analysis using SSR markers , 2016, BMC Genetics.

[4]  A. Banerjee,et al.  Genetic diversity and structure in hill rice (Oryza sativa L.) landraces from the North-Eastern Himalayas of India , 2016, BMC Genetics.

[5]  M. Khalequzzaman,et al.  Agro-Morphological, Physico-Chemical and Molecular Characterization of Rice Germplasm with Similar Names of Bangladesh , 2016 .

[6]  John R. Clark,et al.  Population Structure and Association Analysis of Bolting, Plant Height, and Leaf Erectness in Spinach , 2016 .

[7]  N. Ivy,et al.  Variability Assessment of Aromatic and Fine Rice Germplasm in Bangladesh Based on Quantitative Traits , 2016, TheScientificWorldJournal.

[8]  S. Neelamraju,et al.  Genetic characterization and population structure of Indian rice cultivars and wild genotypes using core set markers , 2016, 3 Biotech.

[9]  Kazuo N. Watanabe,et al.  Genetic diversity and population structure of ‘Khao Kai Noi’, a Lao rice (Oryza sativa L.) landrace, revealed by microsatellite DNA markers , 2016, Breeding science.

[10]  Lin Bai,et al.  Evaluation of Genetic Diversity and Development of a Core Collection of Wild Rice (Oryza rufipogon Griff.) Populations in China , 2015, PloS one.

[11]  Kenneth L. McNally,et al.  Assessing the genetic diversity of rice originating from Bangladesh, Assam and West Bengal , 2015, Rice.

[12]  A. Banerjee,et al.  Correction: Genetic Diversity and Population Structure in Aromatic and Quality Rice (Oryza sativa L.) Landraces from North-Eastern India , 2015, PloS one.

[13]  Karthik Gunasekaran,et al.  Analysis of Population Structure and Genetic Diversity in Rice Germplasm Using SSR Markers: An Initiative Towards Association Mapping of Agronomic Traits in Oryza Sativa , 2015, Rice.

[14]  Sandeep Sharma,et al.  Genetic Diversity and Population Structure of Basmati Rice (Oryza sativa L.) Germplasm Collected from North Western Himalayas Using Trait Linked SSR Markers , 2015, PloS one.

[15]  A. Banerjee,et al.  Genetic Diversity and Population Structure in Aromatic and Quality Rice (Oryza sativa L.) Landraces from North-Eastern India , 2015, PloS one.

[16]  B. K. Babu,et al.  Population structure and genetic diversity analysis of Indian and exotic rice (Oryza sativa L.) accessions using SSR markers , 2014, Molecular Biology Reports.

[17]  Y. Lei,et al.  Genetic Diversity and Population Structure of the Major Peanut (Arachis hypogaea L.) Cultivars Grown in China by SSR Markers , 2014, PloS one.

[18]  B. Rabiei,et al.  Molecular characterization and genetic diversity analysis of different rice cultivars by microsatellite markers , 2014 .

[19]  Amit Kumar Singh,et al.  Comparison of SSR and SNP Markers in Estimation of Genetic Diversity and Population Structure of Indian Rice Varieties , 2013, PloS one.

[20]  Ashutosh Kumar Singh,et al.  Assessment of genetic diversity in Indian rice germplasm (Oryza sativa L.): use of random versus trait-linked microsatellite markers , 2013, Journal of Genetics.

[21]  S. Dayanandan,et al.  Genetic structure and diversity of indigenous rice (Oryza sativa) varieties in the Eastern Himalayan region of Northeast India , 2013, SpringerPlus.

[22]  S. Majumder The Economics of Early Response and Resilience: Bangladesh Country Study. , 2013 .

[23]  B. Hall,et al.  Building phylogenetic trees from molecular data with MEGA. , 2013, Molecular biology and evolution.

[24]  M. Arif,et al.  GENETIC DIVERSITY IN BASMATI AND NON-BASMATI RICE VARIETIES BASED ON MICROSATELLITE MARKERS , 2013 .

[25]  S. Singh,et al.  Molecular and morphological characterization of Indian farmers rice varieties (Oryza sativa L.). , 2013 .

[26]  M. Prasad,et al.  Genetic diversity and population structure of rice landraces from Eastern and North Eastern States of India , 2013, BMC Genetics.

[27]  Dong-hong Min,et al.  Genetic Diversity, Population Structure and Linkage Disequilibrium in Elite Chinese Winter Wheat Investigated with SSR Markers , 2012, PloS one.

[28]  B. C. Patra,et al.  Assessment of genetic diversity in medicinal rices using microsatellite markers. , 2012 .

[29]  Kittipat Ukoskit,et al.  Genetic structure of Thai rice and rice accessions obtained from the International Rice Research Institute , 2012, Rice.

[30]  Rod Peakall,et al.  GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research—an update , 2012, Bioinform..

[31]  S. Prodhan,et al.  SSR marker-based molecular characterization and genetic diversity analysis of aromatic landreces of rice (Oryza sativa L.) , 2012 .

[32]  Xiangdong Liu,et al.  Population Structure and Genetic Diversity in a Rice Core Collection (Oryza sativa L.) Investigated with SSR Markers , 2011, PloS one.

[33]  M. Nei,et al.  MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. , 2011, Molecular biology and evolution.

[34]  H. T. Stalker,et al.  Population structure and marker–trait association analysis of the US peanut (Arachis hypogaea L.) mini-core collection , 2011, Theoretical and Applied Genetics.

[35]  M. Thudi,et al.  Identification of unique alleles and assessment of genetic diversity of rabi sorghum accessions using simple sequence repeat markers , 2011, Journal of Plant Biochemistry and Biotechnology.

[36]  H. Corke,et al.  Genetic diversity and population structure of a diverse set of rice germplasm for association mapping , 2010, Theoretical and Applied Genetics.

[37]  K. Yamaguchi-Shinozaki,et al.  Genetic analysis of basmati and non-basmati Pakistani rice (Oryza sativa L.) cultivars using microsatellite markers. , 2010 .

[38]  P. H. Yiu,et al.  Analysis of Sarawak Bario Rice Diversity Using Microsatellite Markers , 2009 .

[39]  Rekha Sharma,et al.  SSR marker-based DNA fingerprinting and cultivar identification of rice (Oryza sativa L.) in Punjab state of India , 2009, Plant Genetic Resources.

[40]  Yang Qingwen,et al.  Sampling strategy for an applied core collection of Gaozhou wild rice (Oryza rufipogon Griff.) in Guangdong, China. , 2009 .

[41]  Yang Qingwen,et al.  Comparative study on genetic diversity of wild rice (Oryza rufipogon Griff.) in China and three countries in Southeast Asia. , 2009 .

[42]  M. Thomson,et al.  Genetic Diversity of Isolated Populations of Indonesian Landraces of Rice (Oryza sativa L.) Collected in East Kalimantan on the Island of Borneo , 2009, Rice.

[43]  孙希平,杨庆文,et al.  中国与东南亚三国(越、老、柬)普通野生稻遗传多样性的比较研究 , 2009 .

[44]  Sun Xi Comparative Study on Genetic Diversity of Wild Rice (Oryza rufipogon Griff.) in China and Three Countries in Southeast Asia , 2009 .

[45]  M. Ashrafuzzaman,et al.  Genetic diversity in grain quality and nutrition of aromatic rices , 2009 .

[46]  R. Henry,et al.  Inactivation of an aminoaldehyde dehydrogenase is responsible for fragrance in rice , 2008, Plant Molecular Biology.

[47]  Qizhai Li,et al.  Improved correction for population stratification in genome‐wide association studies by identifying hidden population structures , 2008, Genetic epidemiology.

[48]  E. Veasey,et al.  Morphoagronomic genetic diversity in american wild rice species , 2008 .

[49]  Sunil Archak,et al.  High‐throughput multiplex microsatellite marker assay for detection and quantification of adulteration in Basmati rice (Oryza sativa) , 2007, Electrophoresis.

[50]  D. Reich,et al.  Principal components analysis corrects for stratification in genome-wide association studies , 2006, Nature Genetics.

[51]  P. Smouse,et al.  genalex 6: genetic analysis in Excel. Population genetic software for teaching and research , 2006 .

[52]  English Only THE PEOPLE'S REPUBLIC OF BANGLADESH , 2006 .

[53]  M. Ahmad,et al.  Genetic and phenotypic correlations for some sexual maturity traits in Nilli-Ravi buffalo heifers. , 2006 .

[54]  R. Elston Polymorphism Information Content , 2005 .

[55]  G. Evanno,et al.  Detecting the number of clusters of individuals using the software structure: a simulation study , 2005, Molecular ecology.

[56]  Robert J Henry,et al.  The gene for fragrance in rice. , 2005, Plant biotechnology journal.

[57]  Kejun Liu,et al.  PowerMarker: an integrated analysis environment for genetic marker analysis , 2005, Bioinform..

[58]  Amanda J. Garris,et al.  Genetic Structure and Diversity in Oryza sativa L. , 2005, Genetics.

[59]  E. Spiess Remembrance of Ching Chun Li, 1912-2003. , 2005, Genetics.

[60]  R. Jain,et al.  Genetic analysis of Indian aromatic and quality rice (Oryza sativa L.) germplasm using panels of fluorescently-labeled microsatellite markers , 2004, Theoretical and Applied Genetics.

[61]  J. Glaszmann Isozymes and classification of Asian rice varieties , 1987, Theoretical and Applied Genetics.

[62]  Wang Jing,et al.  Cluster analysis of morphological traits of Gaozhou wild rice populations in Guangdong Province, China , 2004 .

[63]  N. Saini,et al.  Assessment of genetic diversity within and among Basmati and non-Basmati rice varieties using AFLP, ISSR and SSR markers , 2004, Euphytica.

[64]  M. Stephens,et al.  Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies. , 2003, Genetics.

[65]  L. Singh,et al.  Molecular characterization of some Indian Basmati and other elite rice genotypes using fluorescent-AFLP , 2002, Theoretical and Applied Genetics.

[66]  P. Donnelly,et al.  Inference of population structure using multilocus genotype data. , 2000, Genetics.

[67]  W. Powell,et al.  Polymorphism revealed by simple sequence repeats , 1996 .

[68]  G. Khush,et al.  PCR-based marker-assisted selection in rice breeding , 1995 .

[69]  M. Morgante,et al.  PCR-amplified microsatellites as markers in plant genetics. , 1993, The Plant journal : for cell and molecular biology.

[70]  F. Rohlf,et al.  NTSYS-pc Numerical Taxonomy and Multivariate Analysis System, version 2.1: Owner manual , 1992 .

[71]  D. Tautz Hypervariability of simple sequences as a general source for polymorphic DNA markers. , 1989, Nucleic acids research.

[72]  M. Nei Genetic polymorphism and the role of mutation in evolution , 1983 .

[73]  G. J. Mitchell,et al.  Principles and procedures of statistics: A biometrical approach , 1981 .

[74]  L. Cavalli-Sforza,et al.  PHYLOGENETIC ANALYSIS: MODELS AND ESTIMATION PROCEDURES , 1967, Evolution; international journal of organic evolution.

[75]  B. R. Murty,et al.  The nature of divergence in relation to breeding systems in some crop plants , 1966 .

[76]  J. H. Torrie,et al.  Principles and procedures of statistics: McGraw-Hill Book Company, Inc. New York Toronto London. , 1960 .