Genome-wide diversity and selective pressure in the human rhinovirus
暂无分享,去创建一个
E. Mardis | J. Derisi | Hao Li | H. Boushey | V. Magrini | Dale R. Webster | Silvi Rouskin | J. Credle | A. Kistler | D. Schnurr | Joel J. Credle
[1] J. Arnold,et al. Crystal Structure of Poliovirus 3CD Protein: Virally Encoded Protease and Precursor to the RNA-Dependent RNA Polymerase , 2007, Journal of Virology.
[2] P. Simmonds. Recombination and Selection in the Evolution of Picornaviruses and Other Mammalian Positive-Stranded RNA Viruses , 2006, Journal of Virology.
[3] M. L. Yakovenko,et al. Antigenic Evolution of Vaccine-Derived Polioviruses: Changes in Individual Epitopes and Relative Stability of the Overall Immunological Properties , 2006, Journal of Virology.
[4] M. Vignuzzi,et al. Quasispecies diversity determines pathogenesis through cooperative interactions in a viral population , 2006, Nature.
[5] Chandrajit L. Bajaj,et al. VIPERdb: a relational database for structural virology , 2005, Nucleic Acids Res..
[6] M. Collett,et al. Insights into the genetic basis for natural phenotypic resistance of human rhinoviruses to pleconaril. , 2005, Antiviral research.
[7] F. Hayden,et al. Relationship of Pleconaril Susceptibility and Clinical Outcomes in Treatment of Common Colds Caused by Rhinoviruses , 2005, Antimicrobial Agents and Chemotherapy.
[8] Julie K. Pfeiffer,et al. Increased Fidelity Reduces Poliovirus Fitness and Virulence under Selective Pressure in Mice , 2005, PLoS pathogens.
[9] C. Glaser,et al. Rhinovirus Outbreak in a Long Term Care Facility for Elderly Persons Associated with Unusually High Mortality , 2005, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.
[10] M. Vignuzzi,et al. Remote Site Control of an Active Site Fidelity Checkpoint in a Viral RNA-dependent RNA Polymerase* , 2005, Journal of Biological Chemistry.
[11] D. Rock,et al. Comparative Genomics of Foot-and-Mouth Disease Virus , 2005, Journal of Virology.
[12] A. Lukashev. Role of recombination in evolution of enteroviruses , 2005, Reviews in medical virology.
[13] V. Racaniello,et al. Amino Acid Changes in Proteins 2B and 3A Mediate Rhinovirus Type 39 Growth in Mouse Cells , 2005, Journal of Virology.
[14] S. Blomqvist,et al. Phylogenetic analysis of human rhinovirus capsid protein VP1 and 2A protease coding sequences confirms shared genus-like relationships with human enteroviruses. , 2005, The Journal of general virology.
[15] Sergei L. Kosakovsky Pond,et al. HyPhy: hypothesis testing using phylogenies , 2005, Bioinform..
[16] D. Matthews,et al. Conservation of Amino Acids in Human Rhinovirus 3C Protease Correlates with Broad-Spectrum Antiviral Activity of Rupintrivir, a Novel Human Rhinovirus 3C Protease Inhibitor , 2005, Antimicrobial Agents and Chemotherapy.
[17] Marco Vignuzzi,et al. Ribavirin and lethal mutagenesis of poliovirus: molecular mechanisms, resistance and biological implications. , 2005, Virus research.
[18] David Posada,et al. RDP2: recombination detection and analysis from sequence alignments , 2005, Bioinform..
[19] Wai-ming Lee,et al. Complete sequence of the RNA genome of human rhinovirus 16, a clinically useful common cold virus belonging to the ICAM-1 receptor group , 2005, Virus Genes.
[20] T. Ahola,et al. Inhibitors of virus replication: recent developments and prospects , 2004, Applied Microbiology and Biotechnology.
[21] J. Schrenzel,et al. Lower respiratory viral illnesses: improved diagnosis by molecular methods and clinical impact. , 2004, American journal of respiratory and critical care medicine.
[22] Conrad C. Huang,et al. UCSF Chimera—A visualization system for exploratory research and analysis , 2004, J. Comput. Chem..
[23] S. Fuller,et al. Enterovirus 68 is associated with respiratory illness and shares biological features with both the enteroviruses and the rhinoviruses. , 2004, The Journal of general virology.
[24] M. Mulders,et al. Sequence analysis of human rhinoviruses in the RNA-dependent RNA polymerase coding region reveals large within-species variation. , 2004, The Journal of general virology.
[25] S. Yerly,et al. Amplicon Sequencing and Improved Detection of Human Rhinovirus in Respiratory Samples , 2004, Journal of Clinical Microbiology.
[26] M. Pallansch,et al. Complete genome sequences of all members of the species Human enterovirus A. , 2004, The Journal of general virology.
[27] Daniel C. Pevear,et al. VP1 Sequencing of All Human Rhinovirus Serotypes:Insights into Genus Phylogeny and Susceptibility to AntiviralCapsid-BindingCompounds , 2004, Journal of Virology.
[28] M. Pallansch,et al. RNA Recombination Plays a Major Role in Genomic Change during Circulation of Coxsackie B Viruses , 2004, Journal of Virology.
[29] M. Pallansch,et al. Evidence for Frequent Recombination within Species Human Enterovirus B Based on Complete Genomic Sequences of All Thirty-Seven Serotypes , 2004, Journal of Virology.
[30] F. Hayden. Rhinovirus and the lower respiratory tract† , 2004, Reviews in medical virology.
[31] John Maynard Smith,et al. Analyzing the mosaic structure of genes , 1992, Journal of Molecular Evolution.
[32] James M. Eldred,et al. Viral Discovery and Sequence Recovery Using DNA Microarrays , 2003, PLoS biology.
[33] K. McKnight. The human rhinovirus internal cis-acting replication element (cre) exhibits disparate properties among serotypes , 2003, Archives of Virology.
[34] Mark A. Pallansch,et al. Complete Genomic Sequencing Shows that Polioviruses and Members of Human Enterovirus Species C Are Closely Related in the Noncapsid Coding Region , 2003, Journal of Virology.
[35] Julie K. Pfeiffer,et al. A single mutation in poliovirus RNA-dependent RNA polymerase confers resistance to mutagenic nucleotide analogs via increased fidelity , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[36] F. Hayden,et al. Rhinovirus Infections in Hematopoietic Stem Cell Transplant Recipients with Pneumonia , 2003, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.
[37] H. Goossens,et al. Improved Detection of Rhinoviruses by Nucleic Acid Sequence-Based Amplification after Nucleotide Sequence Determination of the 5′ Noncoding Regions of Additional Rhinovirus Strains , 2003, Journal of Clinical Microbiology.
[38] A. Fendrick,et al. The economic burden of non-influenza-related viral respiratory tract infection in the United States. , 2003, Archives of internal medicine.
[39] S. Blomqvist,et al. Human Rhinovirus 87 and Enterovirus 68 Represent a Unique Serotype with Rhinovirus and Enterovirus Features , 2002, Journal of Clinical Microbiology.
[40] A. Paul,et al. Sequence Requirements for Viral RNA Replication and VPg Uridylylation Directed by the Internal cis-Acting Replication Element (cre) of Human Rhinovirus Type 14 , 2002, Journal of Virology.
[41] D. Posada. Evaluation of methods for detecting recombination from DNA sequences: empirical data. , 2002, Molecular biology and evolution.
[42] M. Mulders,et al. Phylogenetic analysis of rhinovirus isolates collected during successive epidemic seasons. , 2002, Virus research.
[43] S. Blomqvist,et al. Genetic clustering of all 102 human rhinovirus prototype strains: serotype 87 is close to human enterovirus 70. , 2002, The Journal of general virology.
[44] P. Stadler,et al. Conserved RNA secondary structures in Picornaviridae genomes. , 2001, Nucleic acids research.
[45] K. Crandall,et al. Evaluation of methods for detecting recombination from DNA sequences: Computer simulations , 2001, Proceedings of the National Academy of Sciences of the United States of America.
[46] A. Paul,et al. Biochemical and Genetic Studies of the Initiation of Human Rhinovirus 2 RNA Replication: Identification of a cis-Replicating Element in the Coding Sequence of 2Apro , 2001, Journal of Virology.
[47] D. Haydon,et al. Evidence for positive selection in foot-and-mouth disease virus capsid genes from field isolates. , 2001, Genetics.
[48] A. Paul,et al. Biochemical and genetic studies of the initiation of human rhinovirus 2 RNA replication: identification of a cis-replicating element in the coding sequence of 2A(pro). , 2001, Journal of virology.
[49] B. Ronacher,et al. The cellular receptor to human rhinovirus 2 binds around the 5‐fold axis and not in the canyon: a structural view , 2000, The EMBO journal.
[50] N. Papadopoulos,et al. Rhinoviruses as pathogens of the lower respiratory tract. , 2000, Canadian respiratory journal.
[51] Mark J. Gibbs,et al. Sister-Scanning: a Monte Carlo procedure for assessing signals in recombinant sequences , 2000, Bioinform..
[52] N. Papadopoulos,et al. Rhinoviruses infect the lower airways. , 2000, The Journal of infectious diseases.
[53] N. Goldman,et al. Codon-substitution models for heterogeneous selection pressure at amino acid sites. , 2000, Genetics.
[54] S. Sawyer,et al. Possible emergence of new geminiviruses by frequent recombination. , 1999, Virology.
[55] M G Rossmann,et al. Review: rhinoviruses and their ICAM receptors. , 1999, Journal of structural biology.
[56] R. Couch,et al. Rhinovirus infections in myelosuppressed adult blood and marrow transplant recipients. , 1999, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.
[57] M. Schroth,et al. Rhinovirus replication causes RANTES production in primary bronchial epithelial cells. , 1999, American journal of respiratory cell and molecular biology.
[58] N. Papadopoulos,et al. Rhinoviruses replicate effectively at lower airway temperatures , 1999, Journal of medical virology.
[59] S. Lemon,et al. The rhinovirus type 14 genome contains an internally located RNA structure that is required for viral replication. , 1998, RNA.
[60] T. Marlovits,et al. Structure of a Neutralizing Antibody Bound Monovalently to Human Rhinovirus 2 , 1998, Journal of Virology.
[61] R. Nielsen,et al. Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene. , 1998, Genetics.
[62] P. Green,et al. Consed: a graphical tool for sequence finishing. , 1998, Genome research.
[63] Ziheng Yang,et al. PAML: a program package for phylogenetic analysis by maximum likelihood , 1997, Comput. Appl. Biosci..
[64] Virus versus antibody. , 1997, Structure.
[65] W. Busse,et al. Detection of rhinovirus RNA in lower airway cells during experimentally induced infection. , 1997, American journal of respiratory and critical care medicine.
[66] D. Blaas,et al. Structure of a neutralizing antibody bound bivalently to human rhinovirus 2. , 1996, The EMBO journal.
[67] D. Burke,et al. Identification of breakpoints in intergenotypic recombinants of HIV type 1 by bootscanning. , 1995, AIDS research and human retroviruses.
[68] G. Stanway,et al. Molecular relationships between 21 human rhinovirus serotypes. , 1995, The Journal of general virology.
[69] D. Proud,et al. Infection of a human respiratory epithelial cell line with rhinovirus. Induction of cytokine release and modulation of susceptibility to infection by cytokine exposure. , 1995, The Journal of clinical investigation.
[70] J. Thompson,et al. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. , 1994, Nucleic acids research.
[71] N. Goldman,et al. A codon-based model of nucleotide substitution for protein-coding DNA sequences. , 1994, Molecular biology and evolution.
[72] E. Kuechler,et al. Members of the low density lipoprotein receptor family mediate cell entry of a minor-group common cold virus. , 1994, Proceedings of the National Academy of Sciences of the United States of America.
[73] D. Stone,et al. Genetic basis of attenuation of the Sabin oral poliovirus vaccines. , 1993, Biologicals : journal of the International Association of Biological Standardization.
[74] B. Clarke,et al. The nature and spatial distribution of amino acid substitutions conferring resistance to neutralizing monoclonal antibodies in human rhinovirus type 2. , 1993, The Journal of general virology.
[75] R. Ren,et al. Identification of two determinants that attenuate vaccine-related type 2 poliovirus , 1991, Journal of virology.
[76] R. Colonno,et al. The major and minor group receptor families contain all but one human rhinovirus serotype. , 1991, Virology.
[77] M. Francis,et al. Neutralizing antibodies to human rhinovirus produced in laboratory animals and humans that recognize a linear sequence from VP2. , 1990, The Journal of general virology.
[78] E. Myers,et al. Basic local alignment search tool. , 1990, Journal of molecular biology.
[79] J. Vadolas,et al. Neutralization epitopes of human rhinovirus type 2. , 1990, The Journal of general virology.
[80] P. Lewi,et al. Two groups of rhinoviruses revealed by a panel of antiviral compounds present sequence divergence and differential pathogenicity , 1990, Journal of virology.
[81] A. Mcclelland,et al. The major human rhinovirus receptor is ICAM-1 , 1989, Cell.
[82] D. Staunton,et al. A cell adhesion molecule, ICAM-1, is the major surface receptor for rhinoviruses , 1989, Cell.
[83] A. Nomoto,et al. Determinants in the 5' noncoding region of poliovirus Sabin 1 RNA that influence the attenuation phenotype , 1989, Journal of virology.
[84] P. Minor,et al. The nucleotide sequence of human rhinovirus 1B: molecular relationships within the rhinovirus genus. , 1988, The Journal of general virology.
[85] W. S. Jordan,et al. A collaborative report: rhinoviruses--extension of the numbering system from 89 to 100. , 1987, Virology.
[86] W. Sommergruber,et al. Evolutionary relationships within the human rhinovirus genus: comparison of serotypes 89, 2, and 14. , 1987, Proceedings of the National Academy of Sciences of the United States of America.
[87] B. Sherry,et al. Use of monoclonal antibodies to identify four neutralization immunogens on a common cold picornavirus, human rhinovirus 14 , 1986, Journal of virology.
[88] J. Maizel,et al. Increased neurovirulence associated with a single nucleotide change in a noncoding region of the Sabin type 3 poliovaccine genome , 1985, Nature.
[89] F. Fraundorfer,et al. Human rhinovirus 2: complete nucleotide sequence and proteolytic processing signals in the capsid protein region. , 1985, Nucleic acids research.
[90] S. Mizutani,et al. Molecular cloning and complete sequence determination of RNA genome of human rhinovirus type 14. , 1985, Proceedings of the National Academy of Sciences of the United States of America.
[91] B. Sherry,et al. Evidence for at least two dominant neutralization antigens on human rhinovirus 14 , 1985, Journal of virology.
[92] R. Mountford,et al. The complete nucleotide sequence of a common cold virus: human rhinovlrus 14 , 1984 .
[93] R. Colonno,et al. Many rhinovirus serotypes share the same cellular receptor , 1984, Journal of virology.
[94] R. Mountford,et al. The complete nucleotide sequence of a common cold virus: human rhinovirus 14. , 1984, Nucleic acids research.
[95] C. Ellenbogen. The common cold. , 1981, American family physician.