Strain Tracking Reveals the Determinants of Bacterial Engraftment in the Human Gut Following Fecal Microbiota Transplantation.
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D. Gevers | R. Xavier | J. Sung | A. Khoruts | E. Alm | Jonathan Friedman | C. Smillie | C. Staley | E. Hohmann | M. Sadowsky | Mark B. Smith | J. Allegretti | J. Sauk | I. Youngster
[1] Huiping Xu,et al. Fecal microbiota transplant in severe and severe-complicated Clostridium difficile: A promising treatment approach , 2016, Gut microbes.
[2] L. Brandt,et al. Complete Microbiota Engraftment Is Not Essential for Recovery from Recurrent Clostridium difficile Infection following Fecal Microbiota Transplantation , 2016, mBio.
[3] M. Henn,et al. A Novel Microbiome Therapeutic Increases Gut Microbial Diversity and Prevents Recurrent Clostridium difficile Infection. , 2016, The Journal of infectious diseases.
[4] P. Bork,et al. Durable coexistence of donor and recipient strains after fecal microbiota transplantation , 2016, Science.
[5] Jason B. Williams,et al. Commensal Bifidobacterium promotes antitumor immunity and facilitates anti–PD-L1 efficacy , 2015, Science.
[6] F. Ginhoux,et al. Anticancer immunotherapy by CTLA-4 blockade relies on the gut microbiota , 2015, Science.
[7] Rob Knight,et al. ConStrains identifies microbial strains in metagenomic datasets , 2015, Nature Biotechnology.
[8] M. Surette,et al. Fecal Microbiota Transplantation Induces Remission in Patients With Active Ulcerative Colitis in a Randomized Controlled Trial. , 2015, Gastroenterology.
[9] Sophie J. Weiss,et al. Dynamic changes in short- and long-term bacterial composition following fecal microbiota transplantation for recurrent Clostridium difficile infection , 2015, Microbiome.
[10] Samuel I. Miller,et al. Fecal Microbial Transplant Effect on Clinical Outcomes and Fecal Microbiome in Active Crohn's Disease , 2015, Inflammatory bowel diseases.
[11] J. Meek,et al. Burden of Clostridium difficile infection in the United States. , 2015, The New England journal of medicine.
[12] Elhanan Borenstein,et al. Extensive Strain-Level Copy-Number Variation across Human Gut Microbiome Species , 2015, Cell.
[13] T. Cullen,et al. Antimicrobial peptide resistance mediates resilience of prominent gut commensals during inflammation , 2015, Science.
[14] Daniel M. Saman,et al. Recovery of the Gut Microbiome following Fecal Microbiota Transplantation , 2014, mBio.
[15] Jenny Sauk,et al. Fecal microbiota transplant for relapsing Clostridium difficile infection using a frozen inoculum from unrelated donors: a randomized, open-label, controlled pilot study. , 2014, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.
[16] R. Britton,et al. Role of the intestinal microbiota in resistance to colonization by Clostridium difficile. , 2014, Gastroenterology.
[17] A. Khoruts,et al. From stool transplants to next-generation microbiota therapeutics. , 2014, Gastroenterology.
[18] Alexandros Stamatakis,et al. RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies , 2014, Bioinform..
[19] T. Junt,et al. Gut microbiota metabolism of dietary fiber influences allergic airway disease and hematopoiesis , 2014, Nature Medicine.
[20] J. Petrosino,et al. Microbiota Modulate Behavioral and Physiological Abnormalities Associated with Neurodevelopmental Disorders , 2013, Cell.
[21] Shashank Garg,et al. Microbiota Dynamics in Patients Treated with Fecal Microbiota Transplantation for Recurrent Clostridium difficile Infection , 2013, PloS one.
[22] M. Tomita,et al. Commensal microbe-derived butyrate induces the differentiation of colonic regulatory T cells , 2013, Nature.
[23] I-Min A. Chen,et al. IMG 4 version of the integrated microbial genomes comparative analysis system , 2013, Nucleic Acids Res..
[24] Alexandros Stamatakis,et al. Metagenomic species profiling using universal phylogenetic marker genes , 2013, Nature Methods.
[25] Chaochun Wei,et al. NeSSM: A Next-Generation Sequencing Simulator for Metagenomics , 2013, PloS one.
[26] J. Clemente,et al. Gut Microbiota from Twins Discordant for Obesity Modulate Metabolism in Mice , 2013, Science.
[27] Klaus Ley,et al. Bacterial colonization factors control specificity and stability of the gut microbiota , 2013, Nature.
[28] Robert C. Edgar,et al. UPARSE: highly accurate OTU sequences from microbial amplicon reads , 2013, Nature Methods.
[29] M. Hattori,et al. Treg induction by a rationally selected mixture of Clostridia strains from the human microbiota , 2013, Nature.
[30] Sarah L. Westcott,et al. Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform , 2013, Applied and Environmental Microbiology.
[31] Susan Holmes,et al. phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data , 2013, PloS one.
[32] E. Zoetendal,et al. Duodenal infusion of donor feces for recurrent Clostridium difficile. , 2013, The New England journal of medicine.
[33] L. Brandt,et al. Fecal microbiota transplantation: past, present and future , 2013, Current opinion in gastroenterology.
[34] Alison S. Waller,et al. Genomic variation landscape of the human gut microbiome , 2012, Nature.
[35] Emma Allen-Vercoe,et al. Toward an Understanding of Changes in Diversity Associated with Fecal Microbiome Transplantation Based on 16S rRNA Gene Deep Sequencing , 2012, mBio.
[36] Taane G. Clark,et al. Targeted Restoration of the Intestinal Microbiota with a Simple, Defined Bacteriotherapy Resolves Relapsing Clostridium difficile Disease in Mice , 2012, PLoS pathogens.
[37] E. Zoetendal,et al. Transfer of intestinal microbiota from lean donors increases insulin sensitivity in individuals with metabolic syndrome. , 2012, Gastroenterology.
[38] C. Huttenhower,et al. Metagenomic microbial community profiling using unique clade-specific marker genes , 2012, Nature Methods.
[39] Katherine H. Huang,et al. Structure, Function and Diversity of the Healthy Human Microbiome , 2012, Nature.
[40] E. Martens,et al. How glycan metabolism shapes the human gut microbiota , 2012, Nature Reviews Microbiology.
[41] Steven L Salzberg,et al. Fast gapped-read alignment with Bowtie 2 , 2012, Nature Methods.
[42] R. Knight,et al. UniFrac: an effective distance metric for microbial community comparison , 2011, The ISME Journal.
[43] S. Mazmanian,et al. Inducible Foxp3+ regulatory T-cell development by a commensal bacterium of the intestinal microbiota , 2010, Proceedings of the National Academy of Sciences.
[44] Jeet Sukumaran,et al. DendroPy: a Python library for phylogenetic computing , 2010, Bioinform..
[45] George C. Ebers,et al. The natural history of multiple sclerosis, a geographically based study 10: relapses and long-term disability , 2010, Brain : a journal of neurology.
[46] Dan R. Littman,et al. Induction of Intestinal Th17 Cells by Segmented Filamentous Bacteria , 2009, Cell.
[47] J. Eisen,et al. A simple, fast, and accurate method of phylogenomic inference , 2008, Genome Biology.
[48] D. Antonopoulos,et al. Decreased diversity of the fecal Microbiome in recurrent Clostridium difficile-associated diarrhea. , 2008, The Journal of infectious diseases.
[49] Eoin L. Brodie,et al. Greengenes: Chimera-checked 16S rRNA gene database and workbench compatible in ARB , 2006 .
[50] Chanathip Pharino,et al. Genotypic Diversity Within a Natural Coastal Bacterioplankton Population , 2005, Science.
[51] Korbinian Strimmer,et al. APE: Analyses of Phylogenetics and Evolution in R language , 2004, Bioinform..
[52] M. Floch. Intestinal microbiota metabolism of a prebiotic to treat hepatic encephalopathy. , 2015, Clinical gastroenterology and hepatology : the official clinical practice journal of the American Gastroenterological Association.
[53] Robert C. Edgar,et al. Search and clustering orders of magnitude faster than BLAST , 2010 .
[54] Claude-Alain H. Roten,et al. Fast and accurate short read alignment with Burrows–Wheeler transform , 2009, Bioinform..
[55] Andy Liaw,et al. Classification and Regression by randomForest , 2007 .
[56] Peer Bork,et al. Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotation , 2007, Bioinform..