Unlocking the hidden talent of DNA: Unexpected catalytic activity for colorimetric assay of alkaline phosphatase.

Carboxylic acids have been efficiently used to activate H2O2 to form even more potent oxidant-peroxy acids through enzyme-catalyzed processes. By employing acetic acid as the activator, herein we report for the first time that cofactor-free DNA displays unexpected activity in H2O2-mediated oxidation of 3,3',5,5'-tetramethylbenzidine (TMB) under mild conditions. A series of 10-nt oligonucleotides were rationally designed with various combinations of double nucleotides including TG, AG, CG, TA and AC respectively, which demonstrates that the catalytic performance of DNA is highly dependent upon the sequence composition, strand length and continuous nucleotides. Inspired by phosphate-induced inhibition effects on the formation of peracetic acid, an ultrasensitive assay was well-established for monitoring alkaline phosphatase (ALP) on the basis of double terminal-phosphorylated G-rich oligonucleotides. Phosphorylated DNA not only serves as the substrate for ALP-catalyzed hydrolysis, but also acts as the enzyme-like catalyst for signal amplification. Quantitative determination of ALP is realized in a linear range from 0.05 to 15 mU/mL, resulting in the limit of detection of 0.01 mU/mL. The rapid and reliable test also has great potential in analyzing serum samples for practical disease diagnosis.

[1]  Wei Li,et al.  Engineering oligonucleotide-based peroxidase mimetics for the colorimetric assay of S1 nuclease , 2018 .

[2]  Yu Wang,et al.  Guanine-rich DNA-based peroxidase mimetics for colorimetric assays of alkaline phosphatase. , 2016, Biosensors & bioelectronics.

[3]  Xiaogang Qu,et al.  Unraveling the Enzymatic Activity of Oxygenated Carbon Nanotubes and Their Application in the Treatment of Bacterial Infections. , 2018, Nano letters.

[4]  Huzhi Zheng,et al.  Dichlorofluorescein as a peroxidase mimic and its application to glucose detection , 2017 .

[5]  G. Yang,et al.  Nanodiamonds as pH-switchable oxidation and reduction catalysts with enzyme-like activities for immunoassay and antioxidant applications. , 2017, Nanoscale.

[6]  Xiaogang Qu,et al.  Catalytically active nanomaterials: a promising candidate for artificial enzymes. , 2014, Accounts of chemical research.

[7]  L. Johnson,et al.  Structural basis for control by phosphorylation. , 1997, Chemical reviews.

[8]  R. Sheldon,et al.  Baeyer–Villiger oxidation with peracid generated in situ by CaLB-CLEA catalyzed perhydrolysis , 2013 .

[9]  Juan Peng,et al.  Copper sulfide nanoparticle-decorated graphene as a catalytic amplification platform for electrochemical detection of alkaline phosphatase activity. , 2015, Analytica chimica acta.

[10]  Jiajun Liu,et al.  Ultra-small CuS Nanoparticles as Peroxidase Mimetics for Sensitive and Colorimetric Detection of Uric Acid in Human Serum , 2018 .

[11]  Ronghua Yang,et al.  Filling in the Gaps between Nanozymes and Enzymes: Challenges and Opportunities. , 2017, Bioconjugate chemistry.

[12]  Qian Wang,et al.  Monitoring of Heparin Activity in Live Rats Using Metal-Organic Framework Nanosheets as Peroxidase Mimics. , 2017, Analytical chemistry.

[13]  J. Schrag,et al.  Switching catalysis from hydrolysis to perhydrolysis in Pseudomonas fluorescens esterase. , 2010, Biochemistry.

[14]  Zhi Li,et al.  Efficient epoxidation of alkenes with hydrogen peroxide, lactone, and lipase , 2009 .

[15]  Wei Li,et al.  Hunting for the “Sweet Spot”: Effects of Contiguous Guanines and Strand Lengths on the Catalytic Performance of DNA-Based Peroxidase Mimetics , 2018, Catalysis Letters.

[16]  Tao Li,et al.  Potassium-lead-switched G-quadruplexes: a new class of DNA logic gates. , 2009, Journal of the American Chemical Society.

[17]  A. Shen,et al.  Rapid and Reliable Detection of Alkaline Phosphatase by a Hot Spots Amplification Strategy Based on Well-Controlled Assembly on Single Nanoparticle. , 2017, ACS applied materials & interfaces.

[18]  S. Hardy,et al.  Inside the human cancer tyrosine phosphatome , 2010, Nature Reviews Cancer.

[19]  Xiaogang Qu,et al.  Graphene Oxide: Intrinsic Peroxidase Catalytic Activity and Its Application to Glucose Detection , 2010, Advanced materials.

[20]  H. Luo,et al.  A novel "signal-on" photoelectrochemical sensor for ultrasensitive detection of alkaline phosphatase activity based on a TiO2/g-C3N4 heterojunction. , 2018, The Analyst.

[21]  J. Tuszynski,et al.  Activation of Hydrogen Peroxide to Peroxytetradecanoic Acid Is Responsible for Potent Inhibition of Protein Tyrosine Phosphatase CD45 , 2012, PloS one.

[22]  Xiaoyu Wang,et al.  Nanozymes in bionanotechnology: from sensing to therapeutics and beyond , 2016 .

[23]  Donghong Yu,et al.  Pyrophosphate as substrate for alkaline phosphatase activity: A convenient flow-injection chemiluminescence assay. , 2017, Luminescence : the journal of biological and chemical luminescence.

[24]  E. Wang,et al.  Nanomaterials with enzyme-like characteristics (nanozymes): next-generation artificial enzymes. , 2013, Chemical Society reviews.

[25]  Xiaojun Zhang,et al.  Naked-eye sensitive detection of alkaline phosphatase (ALP) and pyrophosphate (PPi) based on a horseradish peroxidase catalytic colorimetric system with Cu(ii). , 2016, The Analyst.

[26]  P. Domínguez de María,et al.  Lipase-mediated selective oxidation of furfural and 5-hydroxymethylfurfural. , 2013, ChemSusChem.

[27]  P. Domínguez de María,et al.  Lipase-mediated oxidative delignification in non-aqueous media: formation of de-aromatized lignin-oil and cellulase-accessible polysaccharides. , 2013, ChemSusChem.

[28]  P. Cohen,et al.  The regulation of protein function by multisite phosphorylation--a 25 year update. , 2000, Trends in biochemical sciences.

[29]  V. J. Jadhav,et al.  Development of a Chromatographic Method for the Determination of Alkaline Phosphatase Activity in Pasteurized Milk , 2016, Food Analytical Methods.

[30]  I. Lavandera,et al.  Novel chemoenzymatic oxidation of amines into oximes based on hydrolase-catalysed peracid formation. , 2017, Organic & biomolecular chemistry.

[31]  Itamar Willner,et al.  Nucleoapzymes: Hemin/G-Quadruplex DNAzyme-Aptamer Binding Site Conjugates with Superior Enzyme-like Catalytic Functions. , 2016, Journal of the American Chemical Society.

[32]  Jiangjiexing Wu,et al.  Rational Design of Au@Pt Multibranched Nanostructures as Bifunctional Nanozymes. , 2018, ACS applied materials & interfaces.

[33]  A. Drews,et al.  Development of a continuous process for the lipase-mediated synthesis of peracids , 2017 .

[34]  Kai Li,et al.  Deciphering a nanocarbon-based artificial peroxidase: chemical identification of the catalytically active and substrate-binding sites on graphene quantum dots. , 2015, Angewandte Chemie.

[35]  Faheem Muhammad,et al.  Nitrogen-Doped Carbon Nanomaterials as Highly Active and Specific Peroxidase Mimics , 2018, Chemistry of Materials.

[36]  Xuan Weng,et al.  Chitosan as a peroxidase mimic: Paper based sensor for the detection of hydrogen peroxide , 2018, Sensors and Actuators B: Chemical.

[37]  Jian Sun,et al.  Fluorescence Immunoassay Based on the Phosphate-Triggered Fluorescence Turn-on Detection of Alkaline Phosphatase. , 2018, Analytical chemistry.

[38]  Xin Wu,et al.  Copper-Mediated DNA-Scaffolded Silver Nanocluster On-Off Switch for Detection of Pyrophosphate and Alkaline Phosphatase. , 2016, Analytical chemistry.

[39]  A. Omar,et al.  Cationized dextran nanoparticle-encapsulated CXCR4 -siRNA enhanced correlation between CXCR4 expression and serum alkaline phosphatase in a mouse model of colorectal cancer , 2012 .

[40]  Jie Gao,et al.  Colorimetric logic gate for alkaline phosphatase based on copper (II)-based metal-organic frameworks with peroxidase-like activity. , 2018, Analytica chimica acta.

[41]  Guonan Chen,et al.  A sensitive fluorescence biosensor for alkaline phosphatase activity based on the Cu(II)-dependent DNAzyme. , 2016, Analytica chimica acta.

[42]  Yuming Dong,et al.  Versatile and Amplified Biosensing through Enzymatic Cascade Reaction by Coupling Alkaline Phosphatase in Situ Generation of Photoresponsive Nanozyme. , 2015, Analytical chemistry.

[43]  Jiangjiexing Wu,et al.  Integrated nanozymes: facile preparation and biomedical applications. , 2018, Chemical communications.

[44]  J. Millán,et al.  Intestinal alkaline phosphatase prevents metabolic syndrome in mice , 2013, Proceedings of the National Academy of Sciences.

[45]  Tuqiao Zhang,et al.  Oxidation of β-lactam antibiotics by peracetic acid: Reaction kinetics, product and pathway evaluation. , 2017, Water research.

[46]  Dong Xu,et al.  A DNA as a Substrate and an Enzyme: Direct Profiling of Methyltransferase Activity by Cytosine Methylation of a DNAzyme. , 2018, Chemistry.

[47]  Hui Wei,et al.  2D-Metal-Organic-Framework-Nanozyme Sensor Arrays for Probing Phosphates and Their Enzymatic Hydrolysis. , 2018, Analytical chemistry.

[48]  Peizhe Sun,et al.  UV/Peracetic Acid for Degradation of Pharmaceuticals and Reactive Species Evaluation. , 2017, Environmental science & technology.

[49]  Jian Sun,et al.  Alkaline Phosphatase Assay Based on the Chromogenic Interaction of Diethanolamine with 4-Aminophenol. , 2018, Analytical chemistry.

[50]  Zhihui Dai,et al.  Fluorescence Regulation of Poly(thymine)-Templated Copper Nanoparticles via an Enzyme-Triggered Reaction toward Sensitive and Selective Detection of Alkaline Phosphatase. , 2017, Analytical chemistry.

[51]  S. Yao,et al.  Insight into G-quadruplex-hemin DNAzyme/RNAzyme: adjacent adenine as the intramolecular species for remarkable enhancement of enzymatic activity , 2016, Nucleic acids research.

[52]  X. An,et al.  New metal-free catalytic degradation systems with carbon dots for thymol blue , 2017 .

[53]  H. Ju,et al.  A Thermophilic Tetramolecular G-Quadruplex/Hemin DNAzyme. , 2017, Angewandte Chemie.

[54]  R. Kazlauskas,et al.  Revised molecular basis of the promiscuous carboxylic acid perhydrolase activity in serine hydrolases. , 2012, Chemistry.

[55]  J. Eastman,et al.  Serum alkaline phosphatase: normal values by sex and age. , 1977, Clinical chemistry.

[56]  Yilin Wang,et al.  Synthesis of catalytically active carbon quantum dots and its application for colorimetric detection of glutathione , 2018, Sensors and Actuators B: Chemical.