Helastic: On combining threshold-based and Serverless elasticity approaches for optimizing the execution of bioinformatics applications

[1]  Sam Jabbehdari,et al.  An autonomic resource provisioning approach for service-based cloud applications: A hybrid approach , 2018, Future Gener. Comput. Syst..

[2]  Jean-Michel Claverie,et al.  Phylogeny.fr: robust phylogenetic analysis for the non-specialist , 2008, Nucleic Acids Res..

[3]  Mengyuan Li,et al.  Peeking Behind the Curtains of Serverless Platforms , 2018, USENIX Annual Technical Conference.

[4]  David Posada,et al.  ProtTest: selection of best-fit models of protein evolution , 2005, Bioinform..

[5]  Ion Stoica,et al.  Occupy the cloud: distributed computing for the 99% , 2017, SoCC.

[6]  Victor I. Chang,et al.  Towards Enabling Live Thresholding as Utility to Manage Elastic Master-Slave Applications in the Cloud , 2017, Journal of Grid Computing.

[7]  Heshan Kumarage,et al.  Patient clustering using dynamic partitioning on correlated and uncertain biomedical data , 2020, Comput. Methods Programs Biomed..

[8]  Mostafa Ghobaei-Arani,et al.  An efficient resource provisioning approach for analyzing cloud workloads: a metaheuristic-based clustering approach , 2020, The Journal of Supercomputing.

[9]  Ramón Doallo,et al.  CircadiOmics: integrating circadian genomics, transcriptomics, proteomics and metabolomics , 2012, Nature Methods.

[10]  Joaquín Dopazo,et al.  Phylemon: a suite of web tools for molecular evolution, phylogenetics and phylogenomics , 2007, Nucleic Acids Res..

[11]  Sundeep Rangan,et al.  Near-memory Acceleration for Scalable Phylogenetic Inference , 2020, FPGA.

[12]  David P. Anderson,et al.  SETI@home-massively distributed computing for SETI , 2001, Comput. Sci. Eng..

[13]  Yu Wang,et al.  A Survey of Network Virtualization Techniques for Internet of Things Using SDN and NFV , 2020, ACM Comput. Surv..

[14]  Jörn Kuhlenkamp,et al.  Benchmarking elasticity of FaaS platforms as a foundation for objective-driven design of serverless applications , 2020, SAC.

[15]  Alexei J Drummond,et al.  Estimating mutation parameters, population history and genealogy simultaneously from temporally spaced sequence data. , 2002, Genetics.

[16]  Krzysztof Rzadca,et al.  Autopilot: workload autoscaling at Google , 2020, EuroSys.

[17]  Sudhir Kumar,et al.  MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets. , 2016, Molecular biology and evolution.

[18]  Rubén Sánchez,et al.  Phylemon 2.0: a suite of web-tools for molecular evolution, phylogenetics, phylogenomics and hypotheses testing , 2011, Nucleic Acids Res..

[19]  Thomas M. Keane,et al.  DPRml: distributed phylogeny reconstruction by maximum likelihood , 2005, Bioinform..

[20]  Mark A. Miller,et al.  Creating the CIPRES Science Gateway for inference of large phylogenetic trees , 2010, 2010 Gateway Computing Environments Workshop (GCE).

[21]  Randy H. Katz,et al.  A view of cloud computing , 2010, CACM.

[22]  Cristiano André da Costa,et al.  AutoElastic: Automatic Resource Elasticity for High Performance Applications in the Cloud , 2016, IEEE Transactions on Cloud Computing.

[23]  John Chilton,et al.  The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update , 2016, Nucleic Acids Res..

[24]  David Posada,et al.  MODELTEST: testing the model of DNA substitution , 1998, Bioinform..

[25]  Thomas M. Keane,et al.  MultiPhyl: a high-throughput phylogenomics webserver using distributed computing , 2007, Nucleic Acids Res..

[26]  Leila Esmaeili,et al.  An elastic controller using Colored Petri Nets in cloud computing environment , 2019, Cluster Computing.

[27]  Philippe O. A. Navaux,et al.  A lightweight plug-and-play elasticity service for self-organizing resource provisioning on parallel applications , 2018, Future Gener. Comput. Syst..

[28]  K. Crandall,et al.  Phylogeny Estimation and Hypothesis Testing Using Maximum Likelihood , 1997 .

[29]  Johannes Grohmann,et al.  Predicting the Costs of Serverless Workflows , 2020, ICPE.

[30]  Misagh Kordi,et al.  On Inferring Additive and Replacing Horizontal Gene Transfers Through Phylogenetic Reconciliation , 2019, bioRxiv.

[31]  John P. Huelsenbeck,et al.  MRBAYES: Bayesian inference of phylogenetic trees , 2001, Bioinform..

[32]  D. Posada.  jModelTest: phylogenetic model averaging. , 2008, Molecular biology and evolution.

[33]  Cristiano André da Costa,et al.  Elastipipe: On Providing Cloud Elasticity for Pipeline-structured Applications , 2016, 3PGCIC.