Transcriptome analysis reveals differential transcription in tomato (Solanum lycopersicum) following inoculation with Ralstonia solanacearum
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Yang Gao | Q. Shao | Na Chen | Xiaopeng Li | Qineng Lu
[1] Guizhi Li,et al. A Genome-Wide Analysis of StTGA Genes Reveals the Critical Role in Enhanced Bacterial Wilt Tolerance in Potato During Ralstonia solanacearum Infection , 2022, Frontiers in Genetics.
[2] Xiaorong Wan,et al. Complete Genome Sequence Analysis of Ralstonia solanacearum Strain PeaFJ1 Provides Insights Into Its Strong Virulence in Peanut Plants , 2022, Frontiers in Microbiology.
[3] Jingjing Yang,et al. Dual RNA-seq reveals the global transcriptome dynamics of Ralstonia solanacearum and pepper (Capsicum annuum) hypocotyls during bacterial wilt pathogenesis. , 2021, Phytopathology.
[4] S. Park,et al. Ralstonia solanacearum type III effector RipJ triggers bacterial wilt resistance in Solanum pimpinellifolium. , 2021, Molecular plant-microbe interactions : MPMI.
[5] M. M. Dawuda,et al. Proteomic analysis reveals key proteins involved in ethylene-induced adventitious root development in cucumber (Cucumis sativus L.) , 2021, PeerJ.
[6] Zhenguo Chen,et al. Digital gene expression analysis of the response to Ralstonia solanacearum between resistant and susceptible tobacco varieties , 2021, Scientific Reports.
[7] Priti,et al. Comparative RNA-Seq analysis unfolds a complex regulatory network imparting yellow mosaic disease resistance in mungbean [Vigna radiata (L.) R. Wilczek] , 2021, PloS one.
[8] O. Bouchez,et al. Convergent Rewiring of the Virulence Regulatory Network Promotes Adaptation of Ralstonia solanacearum on Resistant Tomato , 2020, Molecular biology and evolution.
[9] Q. Ma,et al. Wheat thioredoxin (TaTrxh1) associates with the RD19-like cysteine protease TaCP1 to defend against stripe rust fungus through the modulation of programmed cell death. , 2020, Molecular plant-microbe interactions : MPMI.
[10] Ping Wang,et al. Transcriptomic and genetic approaches reveal an essential role of the NAC transcription factor SlNAP1 in the growth and defense response of tomato , 2020, Horticulture Research.
[11] Diqiu Yu,et al. The transcription factor WRKY75 positively regulates jasmonate-mediated plant defense to necrotrophic fungal pathogens , 2020, Journal of experimental botany.
[12] G. Van den Ackerveken,et al. Salicylic Acid Steers the Growth-Immunity Tradeoff. , 2020, Trends in plant science.
[13] Xiangjing Wang,et al. A Streptomyces sp. NEAU-HV9: Isolation, Identification, and Potential as a Biocontrol Agent against Ralstonia solanacearum of Tomato Plants , 2020, Microorganisms.
[14] M. Rouard,et al. Deep RNA-seq analysis reveals key responding aspects of wild banana relative resistance to Fusarium oxysporum f. sp. cubense tropical race 4 , 2020, Functional & Integrative Genomics.
[15] Bo Liu,et al. Combined use of a microbial restoration substrate and avirulent Ralstonia solanacearum for the control of tomato bacterial wilt , 2019, Scientific Reports.
[16] Zejun Huang,et al. Anthocyanin Fruit encodes an R2R3-MYB transcription factor, SlAN2-like, activating the transcription of SlMYBATV to fine-tune anthocyanin content in tomato fruit. , 2019, The New phytologist.
[17] Xin Li,et al. Salicylic acid: biosynthesis, perception, and contributions to plant immunity. , 2019, Current opinion in plant biology.
[18] Guoping Wang,et al. Resistance against Ralstonia solanacearum in tomato depends on the methionine cycle and the &ggr;‐aminobutyric acid metabolic pathway , 2019, The Plant journal : for cell and molecular biology.
[19] Guoping Wang,et al. Transcriptome Analysis Reveals New Insights into the Bacterial Wilt Resistance Mechanism Mediated by Silicon in Tomato , 2019, International journal of molecular sciences.
[20] J. Debbarma,et al. Ethylene Response Factor (ERF) Family Proteins in Abiotic Stresses and CRISPR–Cas9 Genome Editing of ERFs for Multiple Abiotic Stress Tolerance in Crop Plants: A Review , 2019, Molecular Biotechnology.
[21] W. Saburi,et al. The rice ethylene response factor OsERF83 positively regulates disease resistance to Magnaporthe oryzae. , 2019, Plant physiology and biochemistry : PPB.
[22] Ying Liu,et al. NtPR1a regulates resistance to Ralstonia solanacearum in Nicotiana tabacum via activating the defense-related genes. , 2019, Biochemical and biophysical research communications.
[23] Haitao Shi,et al. Molecular functional analysis of auxin/indole-3-acetic acid proteins (Aux/IAAs) in plant disease resistance in cassava. , 2019, Physiologia plantarum.
[24] Dong-Soo Park,et al. OsTGA2 confers disease resistance to rice against leaf blight by regulating expression levels of disease related genes via interaction with NH1 , 2018, PloS one.
[25] Xiaojun Shi,et al. A putative LysR-type transcriptional regulator PrhO positively regulates the type III secretion system and contributes to the virulence of Ralstonia solanacearum. , 2018, Molecular plant pathology.
[26] D. Inzé,et al. The Pivotal Role of Ethylene in Plant Growth , 2018, Trends in plant science.
[27] Jia Gu,et al. fastp: an ultra-fast all-in-one FASTQ preprocessor , 2018, bioRxiv.
[28] Riyue Dong,et al. RNA-Seq-derived identification of differential transcription in the eggplant (Solanum melongena) following inoculation with bacterial wilt. , 2018, Gene.
[29] A. Iyer-Pascuzzi,et al. Whole Root Transcriptomic Analysis Suggests a Role for Auxin Pathways in Resistance to Ralstonia solanacearum in Tomato. , 2017, Molecular plant-microbe interactions : MPMI.
[30] M. Ohkuma,et al. Comparison of Prokaryotic and Eukaryotic Communities in Soil Samples with and without Tomato Bacterial Wilt Collected from Different Fields , 2017, Microbes and environments.
[31] Ajay Kumar,et al. Disease management of tomato through PGPB: current trends and future perspective , 2017, 3 Biotech.
[32] T. Mukhtar,et al. Evaluation of chili germplasm for resistance to bacterial wilt caused by Ralstonia solanacearum , 2017, Australasian Plant Pathology.
[33] Xuewei Chen,et al. Activation of ethylene signaling pathways enhances disease resistance by regulating ROS and phytoalexin production in rice , 2017, The Plant journal : for cell and molecular biology.
[34] M. J. López-Galiano,et al. Epigenetic regulation of the expression of WRKY75 transcription factor in response to biotic and abiotic stresses in Solanaceae plants , 2017, Plant Cell Reports.
[35] W. Niu,et al. Yields and Nutritional of Greenhouse Tomato in Response to Different Soil Aeration Volume at two depths of Subsurface drip irrigation , 2016, Scientific Reports.
[36] Jeffrey T Leek,et al. Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown , 2016, Nature Protocols.
[37] T. H. Smits,et al. Fire blight disease reactome: RNA-seq transcriptional profile of apple host plant defense responses to Erwinia amylovora pathogen infection , 2016, Scientific Reports.
[38] H. Baek,et al. Evaluation of Resistance to Ralstonia solanacearum in Tomato Genetic Resources at Seedling Stage , 2016, The plant pathology journal.
[39] N. Anjum,et al. Salicylic acid-induced abiotic stress tolerance and underlying mechanisms in plants , 2015, Front. Plant Sci..
[40] X. Deng,et al. Salicylic acid biosynthesis is enhanced and contributes to increased biotrophic pathogen resistance in Arabidopsis hybrids , 2015, Nature Communications.
[41] C. Buell,et al. Transcriptome responses to Ralstonia solanacearum infection in the roots of the wild potato Solanum commersonii , 2015, BMC Genomics.
[42] Steven L Salzberg,et al. HISAT: a fast spliced aligner with low memory requirements , 2015, Nature Methods.
[43] K. Toyota,et al. Recent Trends in Control Methods for Bacterial Wilt Diseases Caused by Ralstonia solanacearum , 2015, Microbes and environments.
[44] S. Salzberg,et al. StringTie enables improved reconstruction of a transcriptome from RNA-seq reads , 2015, Nature Biotechnology.
[45] W. Huber,et al. Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2 , 2014, Genome Biology.
[46] W. Lei,et al. Effects of exogenous silicon supply on the activity of antioxidant enzymes of tomato leaves infected by Ralstonia solanacearum , 2014 .
[47] Xiangchun Yu,et al. Overexpression of constitutively active OsCPK10 increases Arabidopsis resistance against Pseudomonas syringae pv. tomato and rice resistance against Magnaporthe grisea. , 2013, Plant physiology and biochemistry : PPB.
[48] Mauricio O. Carneiro,et al. From FastQ Data to High‐Confidence Variant Calls: The Genome Analysis Toolkit Best Practices Pipeline , 2013, Current protocols in bioinformatics.
[49] Ling Zhou,et al. Transcriptome and Expression Profile Analysis of Highly Resistant and Susceptible Banana Roots Challenged with Fusarium oxysporum f. sp. cubense Tropical Race 4 , 2013, PloS one.
[50] Yan Zhang,et al. Transcriptome profiling of Gossypium barbadense inoculated with Verticillium dahliae provides a resource for cotton improvement , 2013, BMC Genomics.
[51] M. Valls,et al. Ralstonia solanacearum, a widespread bacterial plant pathogen in the post-genomic era. , 2013, Molecular plant pathology.
[52] Jaw-fen Wang,et al. Identification of major QTLs associated with stable resistance of tomato cultivar ‘Hawaii 7996’ to Ralstonia solanacearum , 2013, Euphytica.
[53] Jaw-fen Wang,et al. Identification of major QTLs associated with stable resistance of tomato cultivar ‘Hawaii 7996’ to Ralstonia solanacearum , 2012, Euphytica.
[54] D. Choi,et al. RNA-seq pinpoints a Xanthomonas TAL-effector activated resistance gene in a large-crop genome , 2012, Proceedings of the National Academy of Sciences.
[55] Hideki Takahashi,et al. Transcriptome Analysis of Quantitative Resistance-Specific Response upon Ralstonia solanacearum Infection in Tomato , 2012, PloS one.
[56] C. Allen,et al. The In Planta Transcriptome of Ralstonia solanacearum: Conserved Physiological and Virulence Strategies during Bacterial Wilt of Tomato , 2012, mBio.
[57] Steven L Salzberg,et al. Fast gapped-read alignment with Bowtie 2 , 2012, Nature Methods.
[58] Fengzhi Wu,et al. Dynamics of the diversity of fungal and Fusarium communities during continuous cropping of cucumber in the greenhouse. , 2012, FEMS microbiology ecology.
[59] M. Ercolano,et al. Genetic and genomic approaches for R-gene mediated disease resistance in tomato: retrospects and prospects , 2012, Plant Cell Reports.
[60] K. Nielsen,et al. The Transcriptome of Compatible and Incompatible Interactions of Potato (Solanum tuberosum) with Phytophthora infestans Revealed by DeepSAGE Analysis , 2012, PloS one.
[61] H. Hsieh,et al. Induction of Tomato Jasmonate-Resistant 1-Like 1 Gene Expression Can Delay the Colonization of Ralstonia Solanacearum in Transgenic Tomato , 2012 .
[62] Wei Ma. Roles of Ca2+ and cyclic nucleotide gated channel in plant innate immunity. , 2011, Plant science : an international journal of experimental plant biology.
[63] C. Allen,et al. Ralstonia solanacearum Extracellular Polysaccharide Is a Specific Elicitor of Defense Responses in Wilt-Resistant Tomato Plants , 2011, PloS one.
[64] Youfu Zhao,et al. Autophosphorylation of Tyr-610 in the receptor kinase BAK1 plays a role in brassinosteroid signaling and basal defense gene expression , 2010, Proceedings of the National Academy of Sciences.
[65] S. Genin. Molecular traits controlling host range and adaptation to plants in Ralstonia solanacearum. , 2010, The New phytologist.
[66] M. Kojima,et al. The cytokinin-activated transcription factor ARR2 promotes plant immunity via TGA3/NPR1-dependent salicylic acid signaling in Arabidopsis. , 2010, Developmental cell.
[67] Chiu-Ping Cheng,et al. Ectopic expression of an EAR motif deletion mutant of SlERF3 enhances tolerance to salt stress and Ralstonia solanacearum in tomato , 2010, Planta.
[68] E. Grill,et al. ABA perception and signalling. , 2010, Trends in plant science.
[69] S. Robatzek,et al. Ethylene Signaling Regulates Accumulation of the FLS2 Receptor and Is Required for the Oxidative Burst Contributing to Plant Immunity1[W] , 2010, Plant Physiology.
[70] Jonathan D. G. Jones,et al. Interfamily transfer of a plant pattern-recognition receptor confers broad-spectrum bacterial resistance , 2010, Nature Biotechnology.
[71] Jaw-fen Wang,et al. Development and characterization of tomato SSR markers from genomic sequences of anchored BAC clones on chromosome 6 , 2010, Euphytica.
[72] Mark D. Robinson,et al. edgeR: a Bioconductor package for differential expression analysis of digital gene expression data , 2009, Bioinform..
[73] F. Myouga,et al. Type 2C protein phosphatases directly regulate abscisic acid-activated protein kinases in Arabidopsis , 2009, Proceedings of the National Academy of Sciences.
[74] D. Klessig,et al. Salicylic Acid, a multifaceted hormone to combat disease. , 2009, Annual review of phytopathology.
[75] J. Manners,et al. Linking development to defense: auxin in plant-pathogen interactions. , 2009, Trends in plant science.
[76] E. Grill,et al. Regulators of PP2C Phosphatase Activity Function as Abscisic Acid Sensors , 2009, Science.
[77] P. McCourt,et al. Abscisic Acid Inhibits Type 2C Protein Phosphatases via the PYR/PYL Family of START Proteins , 2009, Science.
[78] D. Inzé,et al. Jasmonate-inducible gene: What does it mean? , 2009, Trends in plant science.
[79] Zhou Guozhi,et al. Genetic diversity of tomato germplasm resources resistant to bacterial wilt (Ralstonia solanacearum) revealed by AFLP. , 2009 .
[80] M. Gerstein,et al. RNA-Seq: a revolutionary tool for transcriptomics , 2009, Nature Reviews Genetics.
[81] Sophia Mersmann,et al. Plant Pattern-Recognition Receptor FLS2 Is Directed for Degradation by the Bacterial Ubiquitin Ligase AvrPtoB , 2008, Current Biology.
[82] Lin Ming-bao. Preliminary Screening for Bacterial Wilt-resistant Tomato and SSR Marker Linked with Resistance , 2008 .
[83] Marta Godoy,et al. ABA Is an Essential Signal for Plant Resistance to Pathogens Affecting JA Biosynthesis and the Activation of Defenses in Arabidopsis[W] , 2007, The Plant Cell Online.
[84] Jonathan D. G. Jones,et al. The plant immune system , 2006, Nature.
[85] Z. Zou,et al. Overexpression of glucanase gene and defensin gene in transgenic tomato enhances resistance to Ralstonia solanacearum , 2006, Russian Journal of Plant Physiology.
[86] Felix Mauch,et al. The role of abscisic acid in plant-pathogen interactions. , 2005, Current opinion in plant biology.
[87] Jonathan D. G. Jones,et al. Bacterial disease resistance in Arabidopsis through flagellin perception , 2004, Nature.
[88] Xinnian Dong,et al. Inducers of Plant Systemic Acquired Resistance Regulate NPR1 Function through Redox Changes , 2003, Cell.
[89] Wang Guo-ping. A Preliminary Study on the Evaluation of Bacterial Wilt 9DResistance in Tomato by a Stem Imprint Method , 2003 .
[90] S. Dinesh-Kumar,et al. Virus-induced gene silencing in tomato. , 2002, The Plant journal : for cell and molecular biology.
[91] Thomas D. Schmittgen,et al. Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method. , 2001, Methods.
[92] Chunhong Chen,et al. Evidence for an Important Role of WRKY DNA Binding Proteins in the Regulation of NPR1 Gene Expression , 2001, The Plant Cell Online.
[93] M. Osiru,et al. Inheritance of resistance to tomato bacterial wilt and its implication for potato improvement in Uganda , 2001 .
[94] M. Ashburner,et al. Gene Ontology: tool for the unification of biology , 2000, Nature Genetics.
[95] Susumu Goto,et al. KEGG: Kyoto Encyclopedia of Genes and Genomes , 2000, Nucleic Acids Res..
[96] B. Mangin,et al. Temporal and multiple quantitative trait loci analyses of resistance to bacterial wilt in tomato permit the resolution of linked loci. , 1999, Genetics.
[97] W. Summers,et al. A Comparison of Pseudomonas solanacearum- resistant Tomato Cultivars as Hybrid Parents , 1995 .
[98] I. Yano,et al. Transfer of Two Burkholderia and An Alcaligenes Species to Ralstonia Gen. Nov. , 1995, Microbiology and immunology.
[99] A. Hayward. Biology and epidemiology of bacterial wilt caused by pseudomonas solanacearum. , 1991, Annual review of phytopathology.
[100] Thomas D. Schmittgen,et al. Analysis of Relative Gene Expression Data Using Real-Time Quantitative PCR and the 2 2 DD C T Method , 2022 .
[101] Supplemental Information 2: Kyoto Encyclopedia of genes and genomes. , 2022 .