Characterizing Star-PCGs

A graph G is called a pairwise compatibility graph (PCG, for short) if it admits a tuple $$(T,w, d_{\min },d_{\max })$$ ( T , w , d min , d max ) of a tree T whose leaf set is equal to the vertex set of G , a non-negative edge weight w , and two non-negative reals $$d_{\min }\le d_{\max }$$ d min ≤ d max such that G has an edge between two vertices $$u,v\in V$$ u , v ∈ V if and only if the distance between the two leaves u and v in the weighted tree ( T ,  w ) is in the interval $$[d_{\min }, d_{\max }]$$ [ d min , d max ] . The tree T is also called a witness tree of the PCG G . How to recognize PCGs is a wide-open problem in the literature. This paper gives a complete characterization for a graph to be a star-PCG (a PCG that admits a star as its witness tree), which provides us the first polynomial-time algorithm for recognizing star-PCGs.

[1]  Debajyoti Mondal,et al.  Journal of Graph Algorithms and Applications a Necessary Condition and a Sufficient Condition for Pairwise Compatibility Graphs , 2022 .

[2]  Tiziana Calamoneri,et al.  Pairwise Compatibility Graphs: A Survey , 2016, SIAM Rev..

[3]  Md. Saidur Rahman,et al.  Discovering Pairwise Compatibility Graphs , 2010, Discret. Math. Algorithms Appl..

[4]  J. Felsenstein Cases in which Parsimony or Compatibility Methods will be Positively Misleading , 1978 .

[5]  Tao Jiang,et al.  Phylogenetic k-Root and Steiner k-Root , 2000, ISAAC.

[6]  Md. Iqbal Hossain,et al.  Journal of Graph Algorithms and Applications Triangle-free Outerplanar 3-graphs Are Pairwise Compatibility Graphs , 2012 .

[7]  Zhi-Zhong Chen,et al.  Computing Phylogenetic Roots with Bounded Degrees and Errors , 2001, WADS.

[8]  Rossella Petreschi,et al.  On pairwise compatibility graphs having Dilworth number k , 2014, Theor. Comput. Sci..

[9]  M. S. Rahman,et al.  Pairwise compatibility graphs revisited , 2013, 2013 International Conference on Informatics, Electronics and Vision (ICIEV).

[10]  Tiziana Calamoneri,et al.  All graphs with at most seven vertices are Pairwise Compatibility Graphs , 2012, Comput. J..

[11]  J. Ian Munro,et al.  Efficient Generation of Uniform Samples from Phylogenetic Trees , 2003, WABI.

[12]  Rossella Petreschi,et al.  On pairwise compatibility graphs having Dilworth number two , 2014, Theor. Comput. Sci..

[13]  Stephane Durocher,et al.  On graphs that are not PCGs , 2013, Theor. Comput. Sci..

[14]  Rossella Petreschi,et al.  On the Pairwise Compatibility Property of some Superclasses of Threshold Graphs , 2013, Discret. Math. Algorithms Appl..

[15]  Antonio Frangioni,et al.  Pairwise Compatibility Graphs of Caterpillars , 2014, Comput. J..

[16]  Hiroshi Nagamochi,et al.  Some Reduction Operations to Pairwise Compatibility Graphs , 2018, Inf. Process. Lett..

[17]  Md. Saidur Rahman,et al.  Pairwise compatibility graphs , 2008, WALCOM.

[18]  Andreas Brandstädt,et al.  Leaf powers , 2021 .

[19]  Dimitrios M. Thilikos,et al.  On Graph Powers for Leaf-Labeled Trees , 2002, J. Algorithms.

[20]  Kellogg S. Booth,et al.  Testing for the Consecutive Ones Property, Interval Graphs, and Graph Planarity Using PQ-Tree Algorithms , 1976, J. Comput. Syst. Sci..