Theoretical and computational investigations of nanoparticle-biomembrane interactions in cellular delivery.
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[1] Phillip J Stansfeld,et al. Molecular simulation approaches to membrane proteins. , 2011, Structure.
[2] Jean-Luc Coll,et al. Physico-chemical parameters that govern nanoparticles fate also dictate rules for their molecular evolution. , 2012, Advanced drug delivery reviews.
[3] Francesco Stellacci,et al. Surface-structure-regulated cell-membrane penetration by monolayer-protected nanoparticles. , 2008, Nature materials.
[4] Non-adiabatic dynamics of interfacial systems: a case study of a nanoparticle penetration into a lipid bilayer , 2011 .
[5] Reinhard Lipowsky,et al. Tubulation and aggregation of spherical nanoparticles adsorbed on vesicles. , 2012, Physical review letters.
[6] Emanuel Fleige,et al. Stimuli-responsive polymeric nanocarriers for the controlled transport of active compounds: concepts and applications. , 2012, Advanced drug delivery reviews.
[7] Bing Yuan,et al. Influence of geometric nanoparticle rotation on cellular internalization process. , 2013, Nanoscale.
[8] R. Granek,et al. Nucleus-targeted drug delivery: theoretical optimization of nanoparticles decoration for enhanced intracellular active transport. , 2014, Nano letters.
[9] Ari Helenius,et al. Virus entry by macropinocytosis , 2009, Nature Cell Biology.
[10] D. Tieleman,et al. The MARTINI force field: coarse grained model for biomolecular simulations. , 2007, The journal of physical chemistry. B.
[11] Daniel G. Anderson,et al. Knocking down barriers: advances in siRNA delivery , 2009, Nature Reviews Drug Discovery.
[12] Mauro Ferrari,et al. Multistage nanovectors: from concept to novel imaging contrast agents and therapeutics. , 2011, Accounts of chemical research.
[13] Yuan Gao,et al. How half-coated janus particles enter cells. , 2013, Journal of the American Chemical Society.
[14] M. Sansom,et al. The interaction of C60 and its derivatives with a lipid bilayer via molecular dynamics simulations , 2009, Nanotechnology.
[15] E. Kumacheva,et al. Properties and emerging applications of self-assembled structures made from inorganic nanoparticles. , 2010, Nature nanotechnology.
[16] Jeff Z. Y. Chen,et al. Adhesion of cylindrical colloids to the surface of a membrane. , 2010, Physical review. E, Statistical, nonlinear, and soft matter physics.
[17] Sabrina Riedl,et al. Membrane-active host defense peptides – Challenges and perspectives for the development of novel anticancer drugs , 2011, Chemistry and physics of lipids.
[18] Yu-qiang Ma,et al. Role of physicochemical properties of coating ligands in receptor-mediated endocytosis of nanoparticles. , 2012, Biomaterials.
[19] Petr Král,et al. Sandwiched graphene--membrane superstructures. , 2010, ACS nano.
[20] Huajian Gao,et al. Cellular uptake of elastic nanoparticles. , 2011, Physical review letters.
[21] Yu-qiang Ma,et al. Designing nanoparticle translocation through membranes by computer simulations. , 2012, ACS nano.
[22] Xianren Zhang,et al. Cooperative effect in receptor-mediated endocytosis of multiple nanoparticles. , 2012, ACS nano.
[23] Yu-qiang Ma,et al. Translocation of polyarginines and conjugated nanoparticles across asymmetric membranes , 2013 .
[24] R. Larson,et al. Multiscale Modeling of Dendrimers and Their Interactions with Bilayers and Polyelectrolytes , 2009, Molecules.
[25] V. Rotello,et al. Surface functionality of nanoparticles determines cellular uptake mechanisms in mammalian cells. , 2013, Small.
[26] M. Ferrari. Cancer nanotechnology: opportunities and challenges , 2005, Nature Reviews Cancer.
[27] H. McMahon,et al. Mechanisms of endocytosis. , 2009, Annual review of biochemistry.
[28] Yajun Wang,et al. Cellular Association and Cargo Release of Redox‐Responsive Polymer Capsules Mediated by Exofacial Thiols , 2011, Advanced materials.
[29] C. Jameson,et al. Nanoparticle permeation induces water penetration, ion transport, and lipid flip-flop. , 2012, Langmuir : the ACS journal of surfaces and colloids.
[30] C. Bertozzi,et al. A cell nanoinjector based on carbon nanotubes , 2007, Proceedings of the National Academy of Sciences.
[31] Q. Liang. Penetration of polymer-grafted nanoparticles through a lipid bilayer , 2013 .
[32] Anna C Balazs,et al. Designing synthetic vesicles that engulf nanoscopic particles. , 2007, The Journal of chemical physics.
[33] A. Mark,et al. Coarse grained model for semiquantitative lipid simulations , 2004 .
[34] Siewert J Marrink,et al. Lipids on the move: simulations of membrane pores, domains, stalks and curves. , 2009, Biochimica et biophysica acta.
[35] A. Alexander-Katz,et al. Cell membranes open "doors" for cationic nanoparticles/biomolecules: insights into uptake kinetics. , 2013, ACS Nano.
[36] N. Gu,et al. Nanoparticle's Size Effect on Its Translocation Across a Lipid Bilayer : A Molecular Dynamics Simulation , 2010 .
[37] Hong-ming Ding,et al. Computer simulation of the role of protein corona in cellular delivery of nanoparticles. , 2014, Biomaterials.
[38] Radhakrishna Sureshkumar,et al. Effects of nanoparticle charge and shape anisotropy on translocation through cell membranes. , 2012, Langmuir : the ACS journal of surfaces and colloids.
[39] H. Maeda,et al. Tumor vascular permeability and the EPR effect in macromolecular therapeutics: a review. , 2000, Journal of controlled release : official journal of the Controlled Release Society.
[40] Tejal A Desai,et al. Micromachined devices: the impact of controlled geometry from cell-targeting to bioavailability. , 2005, Journal of controlled release : official journal of the Controlled Release Society.
[41] Daniel W. Pack,et al. Design and development of polymers for gene delivery , 2005, Nature Reviews Drug Discovery.
[42] Wenchuan Wang,et al. Internalization pathways of nanoparticles and their interaction with a vesicle , 2013 .
[43] Philip M. Kelly,et al. Transferrin-functionalized nanoparticles lose their targeting capabilities when a biomolecule corona adsorbs on the surface. , 2013, Nature nanotechnology.
[44] L. Freund,et al. Growth and shape stability of a biological membrane adhesion complex in the diffusion-mediated regime. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[45] D. Tieleman,et al. Computer simulation study of fullerene translocation through lipid membranes. , 2008, Nature nanotechnology.
[46] Patrick Couvreur,et al. Stimuli-responsive nanocarriers for drug delivery. , 2013, Nature materials.
[47] Shinsuke Sando,et al. A quantum dot conjugated sugar ball and its cellular uptake. On the size effects of endocytosis in the subviral region. , 2004, Journal of the American Chemical Society.
[48] Say Chye Joachim Loo,et al. Biophysical responses upon the interaction of nanomaterials with cellular interfaces. , 2013, Accounts of chemical research.
[49] R. Jernigan,et al. Revealing rotational modes of functionalized gold nanorods on live cell membranes. , 2013, Small.
[50] Wilfred F van Gunsteren,et al. Multi-resolution simulation of biomolecular systems: a review of methodological issues. , 2013, Angewandte Chemie.
[51] Younan Xia,et al. Nanomaterials at work in biomedical research. , 2008, Nature materials.
[52] Prabhani U. Atukorale,et al. Effect of particle diameter and surface composition on the spontaneous fusion of monolayer-protected gold nanoparticles with lipid bilayers. , 2013, Nano letters.
[53] N. Gu,et al. Surface properties of encapsulating hydrophobic nanoparticles regulate the main phase transition temperature of lipid bilayers: A simulation study , 2014, Nano Research.
[54] Christina L. Ting,et al. Interactions of a charged nanoparticle with a lipid membrane: implications for gene delivery. , 2011, Biophysical journal.
[55] Ernst Wagner,et al. Therapeutic plasmid DNA versus siRNA delivery: common and different tasks for synthetic carriers. , 2012, Journal of controlled release : official journal of the Controlled Release Society.
[56] A. Balazs,et al. Forming transmembrane channels using end-functionalized nanotubes. , 2011, Nanoscale.
[57] Adam J. Makarucha,et al. Nanomaterials in biological environment: a review of computer modelling studies , 2011, European Biophysics Journal.
[58] I. Vattulainen,et al. Effects of carbon nanoparticles on lipid membranes: a molecular simulation perspective , 2009 .
[59] Ning Gu,et al. Computational investigation of interaction between nanoparticles and membranes: hydrophobic/hydrophilic effect. , 2008, The journal of physical chemistry. B.
[60] A. Balazs,et al. Harnessing janus nanoparticles to create controllable pores in membranes. , 2008, ACS nano.
[61] G. Gompper,et al. Wrapping of ellipsoidal nano-particles by fluid membranes , 2013, 1303.5567.
[62] R. Larson,et al. The MARTINI Coarse-Grained Force Field: Extension to Proteins. , 2008, Journal of chemical theory and computation.
[63] Younan Xia,et al. Understanding the role of surface charges in cellular adsorption versus internalization by selectively removing gold nanoparticles on the cell surface with a I2/KI etchant. , 2009, Nano letters.
[64] Xing Hua Shi,et al. Advances in the understanding of nanomaterial-biomembrane interactions and their mathematical and numerical modeling. , 2013, Nanomedicine.
[65] B. Smit,et al. Understanding the phase behavior of coarse-grained model lipid bilayers through computational calorimetry. , 2012, The journal of physical chemistry. B.
[66] Warren C W Chan,et al. Understanding and controlling the interaction of nanomaterials with proteins in a physiological environment. , 2012, Chemical Society reviews.
[67] G. Gompper,et al. Shape and orientation matter for the cellular uptake of nonspherical particles. , 2014, Nano letters.
[68] K. Kremer,et al. Aggregation and vesiculation of membrane proteins by curvature-mediated interactions , 2007, Nature.
[69] Subra Suresh,et al. Size‐Dependent Endocytosis of Nanoparticles , 2009, Advanced materials.
[70] W F Drew Bennett,et al. Improved Parameters for the Martini Coarse-Grained Protein Force Field. , 2013, Journal of chemical theory and computation.
[71] Huajian Gao,et al. Role of nanoparticle geometry in endocytosis: laying down to stand up. , 2013, Nano letters.
[72] Yu-qiang Ma,et al. Insights into the endosomal escape mechanism via investigation of dendrimer–membrane interactions , 2012 .
[73] Kai Yang,et al. Molecular modeling of the relationship between nanoparticle shape anisotropy and endocytosis kinetics. , 2012, Biomaterials.
[74] Sandra L. Schmid,et al. Regulated portals of entry into the cell , 2003, Nature.
[75] S. Grinstein,et al. Receptor mobility, the cytoskeleton, and particle binding during phagocytosis. , 2011, Current opinion in cell biology.
[76] Leaf Huang,et al. Recent advances in nonviral vectors for gene delivery. , 2012, Accounts of chemical research.
[77] Hongxia Guo,et al. Simulation study of protein-mediated vesicle fusion. , 2009, The journal of physical chemistry. B.
[78] Tian Xia,et al. Physicochemical properties determine nanomaterial cellular uptake, transport, and fate. , 2013, Accounts of chemical research.
[79] Siewert J. Marrink,et al. The molecular face of lipid rafts in model membranes , 2008, Proceedings of the National Academy of Sciences.
[80] L. Sarkisov,et al. Structure and phase transformations of DPPC lipid bilayers in the presence of nanoparticles: insights from coarse-grained molecular dynamics simulations. , 2011, Langmuir : the ACS journal of surfaces and colloids.
[81] Jing Huang,et al. CHARMM36 all‐atom additive protein force field: Validation based on comparison to NMR data , 2013, J. Comput. Chem..
[82] Yu-qiang Ma,et al. Design maps for cellular uptake of gene nanovectors by computer simulation. , 2013, Biomaterials.
[83] M. Klein,et al. Parametrization and application of a coarse grained force field for benzene/fullerene interactions with lipids. , 2010, The journal of physical chemistry. B.
[84] S. Pogodin,et al. Nanoparticle-induced permeability of lipid membranes. , 2012, ACS nano.
[85] A. Šarić,et al. Mechanism of membrane tube formation induced by adhesive nanocomponents. , 2012, Physical review letters.
[86] Knut Teigen,et al. LIPID11: a modular framework for lipid simulations using amber. , 2012, The journal of physical chemistry. B.
[87] Ilpo Vattulainen,et al. Defect-mediated trafficking across cell membranes: insights from in silico modeling. , 2010, Chemical reviews.
[88] M Ferrari,et al. The role of specific and non-specific interactions in receptor-mediated endocytosis of nanoparticles. , 2007, Biomaterials.
[89] L. Vigh,et al. Membranes: a meeting point for lipids, proteins and therapies , 2008, Journal of cellular and molecular medicine.
[90] Dmitry I Kopelevich,et al. One-dimensional potential of mean force underestimates activation barrier for transport across flexible lipid membranes. , 2013, The Journal of chemical physics.
[91] V. Rotello,et al. The role of surface functionality in determining nanoparticle cytotoxicity. , 2013, Accounts of chemical research.
[92] Quan Li,et al. Free Energy Calculation of Nanodiamond-Membrane Association-The Effect of Shape and Surface Functionalization. , 2014, Journal of chemical theory and computation.
[93] S. Pogodin,et al. Equilibrium insertion of nanoscale objects into phospholipid bilayers , 2011, 1108.5998.
[94] T. Xia,et al. Understanding biophysicochemical interactions at the nano-bio interface. , 2009, Nature materials.
[95] Yanjing Chen,et al. Structural and thermal analysis of lipid vesicles encapsulating hydrophobic gold nanoparticles. , 2012, ACS nano.
[96] V. Baulin,et al. Homo-polymers with balanced hydrophobicity translocate through lipid bilayers and enhance local solvent permeability , 2012 .
[97] D. Cao,et al. The Role of Shape Complementarity in the Protein-Protein Interactions , 2013, Scientific Reports.
[98] Daan Frenkel,et al. Receptor-mediated endocytosis of nanoparticles of various shapes. , 2011, Nano letters.
[99] Yu-qiang Ma,et al. Interactions between Janus particles and membranes. , 2012, Nanoscale.
[100] Arezou A Ghazani,et al. Determining the size and shape dependence of gold nanoparticle uptake into mammalian cells. , 2006, Nano letters.
[101] Holger Gohlke,et al. The Amber biomolecular simulation programs , 2005, J. Comput. Chem..
[102] Reinhard Lipowsky,et al. Pathway of membrane fusion with two tension-dependent energy barriers. , 2007, Physical review letters.
[103] Kai Yang,et al. Computer simulation of the translocation of nanoparticles with different shapes across a lipid bilayer. , 2010, Nature nanotechnology.
[104] Huajian Gao,et al. Graphene microsheets enter cells through spontaneous membrane penetration at edge asperities and corner sites , 2013, Proceedings of the National Academy of Sciences.
[105] Chi Wu,et al. Progress and perspectives in developing polymeric vectors for in vitro gene delivery. , 2013, Biomaterials science.
[106] Haiping Fang,et al. Destructive extraction of phospholipids from Escherichia coli membranes by graphene nanosheets. , 2013, Nature nanotechnology.
[107] P. B. Warren,et al. DISSIPATIVE PARTICLE DYNAMICS : BRIDGING THE GAP BETWEEN ATOMISTIC AND MESOSCOPIC SIMULATION , 1997 .
[108] Shihu Wang,et al. Selectivity of ligand-receptor interactions between nanoparticle and cell surfaces. , 2012, Physical review letters.
[109] Ge Lin,et al. Unambiguous observation of shape effects on cellular fate of nanoparticles , 2014, Scientific Reports.
[110] Mark B. Carter,et al. The Targeted Delivery of Multicomponent Cargos to Cancer Cells via Nanoporous Particle-Supported Lipid Bilayers , 2011, Nature materials.
[111] Gert Storm,et al. Endosomal escape pathways for delivery of biologicals. , 2011, Journal of controlled release : official journal of the Controlled Release Society.
[112] Huajian Gao,et al. A universal law for cell uptake of one-dimensional nanomaterials. , 2014, Nano letters.
[113] Clemens Burda,et al. The unique role of nanoparticles in nanomedicine: imaging, drug delivery and therapy. , 2012, Chemical Society reviews.
[114] X. Duan,et al. Highly efficient gate-tunable photocurrent generation in vertical heterostructures of layered materials. , 2013, Nature nanotechnology.
[115] S. Armes,et al. Controlling cellular uptake by surface chemistry, size, and surface topology at the nanoscale. , 2009, Small.
[116] Xianren Zhang,et al. Molecular modeling of the pathways of vesicle–membrane interaction , 2013 .
[117] S. Pogodin,et al. Can a carbon nanotube pierce through a phospholipid bilayer? , 2010, ACS nano.
[118] C. Jameson,et al. Permeation of nanocrystals across lipid membranes , 2011 .
[119] Wilfred F van Gunsteren,et al. On developing coarse-grained models for biomolecular simulation: a review. , 2012, Physical chemistry chemical physics : PCCP.
[120] W. Mao,et al. Mesoscale modeling: solving complex flows in biology and biotechnology. , 2013, Trends in biotechnology.
[121] Markus Deserno,et al. Elastic deformation of a fluid membrane upon colloid binding. , 2004, Physical review. E, Statistical, nonlinear, and soft matter physics.
[122] Richard N Cohen,et al. Quantification of plasmid DNA copies in the nucleus after lipoplex and polyplex transfection. , 2009, Journal of controlled release : official journal of the Controlled Release Society.
[123] C. Rambo,et al. Nanoparticle translocation through a lipid bilayer tuned by surface chemistry. , 2013, Physical chemistry chemical physics : PCCP.
[124] Jaime Agudo-Canalejo,et al. Wrapping of nanoparticles by membranes. , 2014, Advances in colloid and interface science.
[125] Christina L. Ting,et al. Minimum free energy paths for a nanoparticle crossing the lipid membrane , 2012 .
[126] Shuming Nie,et al. Understanding and overcoming major barriers in cancer nanomedicine. , 2010, Nanomedicine.
[127] Vicki Stone,et al. An in vitro study of the potential of carbon nanotubes and nanofibres to induce inflammatory mediators and frustrated phagocytosis , 2007 .
[128] P. Angelikopoulos,et al. Homogeneous Hydrophobic-Hydrophilic Surface Patterns Enhance Permeation of Nanoparticles through Lipid Membranes. , 2013, The journal of physical chemistry letters.
[129] Huajian Gao,et al. Surface-structure-regulated penetration of nanoparticles across a cell membrane. , 2012, Nanoscale.
[130] Marco P Monopoli,et al. Biomolecular coronas provide the biological identity of nanosized materials. , 2012, Nature nanotechnology.
[131] Yu-qiang Ma,et al. Theoretical and computational studies of dendrimers as delivery vectors. , 2013, Chemical Society reviews.
[132] Warren C W Chan,et al. Nanoparticle-mediated cellular response is size-dependent. , 2008, Nature nanotechnology.
[133] Application of a Continuum Mean Field Approximation to Fullerenes in Lipid Bilayers , 2011 .
[134] M. Sansom,et al. Membrane perturbation by carbon nanotube insertion: pathways to internalization. , 2013, Small.
[135] N. Gu,et al. Cholesterol affects C₆₀ translocation across lipid bilayers. , 2014, Soft matter.
[136] H. Maeda,et al. A new concept for macromolecular therapeutics in cancer chemotherapy: mechanism of tumoritropic accumulation of proteins and the antitumor agent smancs. , 1986, Cancer research.
[137] Daniel Anderson,et al. Delivery materials for siRNA therapeutics. , 2013, Nature materials.
[138] A. Alexander-Katz,et al. Penetration of lipid bilayers by nanoparticles with environmentally-responsive surfaces: simulations and theory , 2011 .
[139] Daniel G. Anderson,et al. Molecularly Self-Assembled Nucleic Acid Nanoparticles for Targeted In Vivo siRNA Delivery , 2012, Nature nanotechnology.
[140] J. Hubbell,et al. Translating materials design to the clinic. , 2013, Nature materials.
[141] Paraskevi Gkeka and Panagiotis Angelikopoulos. The Role of Patterned Hydrophilic Domains in Nanoparticle-Membrane Interactions , 2011 .
[142] S. Pogodin,et al. Surface patterning of carbon nanotubes can enhance their penetration through a phospholipid bilayer. , 2011, ACS nano.
[143] Dennis E Discher,et al. Minimal " Self " Peptides That Inhibit Phagocytic Clearance and Enhance Delivery of Nanoparticles References and Notes , 2022 .
[144] D. Frenkel,et al. Intracellular release of endocytosed nanoparticles upon a change of ligand-receptor interaction. , 2012, ACS nano.
[145] Klaus Schulten,et al. Assembly of Nsp1 Nucleoporins Provides Insight into Nuclear Pore Complex Gating , 2014, PLoS Comput. Biol..
[146] Huajian Gao,et al. Cell entry of one-dimensional nanomaterials occurs by tip recognition and rotation. , 2011, Nature nanotechnology.
[147] Warren C W Chan,et al. Strategies for the intracellular delivery of nanoparticles. , 2011, Chemical Society reviews.
[148] A. Balazs,et al. Interactions of End-functionalized Nanotubes with Lipid Vesicles: Spontaneous Insertion and Nanotube Self-Organization , 2011 .
[149] Amir Houshang Bahrami,et al. Orientational changes and impaired internalization of ellipsoidal nanoparticles by vesicle membranes , 2013 .
[150] V. Ginzburg,et al. Modeling the thermodynamics of the interaction of nanoparticles with cell membranes. , 2007, Nano letters.
[151] G. Battaglia,et al. Endocytosis at the nanoscale. , 2012, Chemical Society reviews.
[152] Bart W. Hoogenboom,et al. Physical modelling of the nuclear pore complex , 2013, Soft Matter.
[153] Yu-qiang Ma,et al. Controlling Cellular Uptake of Nanoparticles with pH-Sensitive Polymers , 2013, Scientific Reports.
[154] Francesco Stellacci,et al. Effect of surface properties on nanoparticle-cell interactions. , 2010, Small.
[155] I. Szleifer,et al. Effect of charge, hydrophobicity, and sequence of nucleoporins on the translocation of model particles through the nuclear pore complex , 2013, Proceedings of the National Academy of Sciences.
[156] Yanjiao Jiang,et al. Biodegradable polymeric micelles for targeted and controlled anticancer drug delivery: Promises, progress and prospects , 2012 .
[157] Reinhard Lipowsky,et al. Tension-induced fusion of bilayer membranes and vesicles , 2005, Nature materials.
[158] Huajian Gao,et al. Probing mechanical principles of cell–nanomaterial interactions , 2014 .
[159] E. Gil,et al. Stimuli-reponsive polymers and their bioconjugates , 2004 .
[160] D. M. Kroll,et al. Monte Carlo simulations of complex formation between a mixed fluid vesicle and a charged colloid , 2009 .
[161] A. Aderem,et al. Mechanisms of phagocytosis. , 1996, Current opinion in immunology.
[162] W. Helfrich. Elastic Properties of Lipid Bilayers: Theory and Possible Experiments , 1973, Zeitschrift fur Naturforschung. Teil C: Biochemie, Biophysik, Biologie, Virologie.
[163] K. Yasuoka,et al. A vesicle cell under collision with a Janus or homogeneous nanoparticle: translocation dynamics and late-stage morphology. , 2013, Nanoscale.
[164] S. Pogodin,et al. Biomolecule surface patterning may enhance membrane association. , 2012, ACS nano.
[165] Samir Mitragotri,et al. Physical approaches to biomaterial design. , 2009, Nature materials.