Instrumentation bias in the use and evaluation of scientific software: recommendations for reproducible practices in the computational sciences
暂无分享,去创建一个
Satrajit S. Ghosh | Arno Klein | Brian B. Avants | Torsten Rohlfing | Nicholas J. Tustison | Hans J. Johnson | Luis Ibanez | N. Tustison | B. Avants | A. Klein | H. Johnson | T. Rohlfing | L. Ibáñez
[1] Brian B. Avants,et al. N4ITK: Improved N3 Bias Correction , 2010, IEEE Transactions on Medical Imaging.
[2] July , 1890, The Hospital.
[3] Robert W. Cox,et al. AFNI: What a long strange trip it's been , 2012, NeuroImage.
[4] Woo Suk Hwang,et al. Who is accountable? , 2007, Nature.
[5] Andreas Prlic,et al. Ten Simple Rules for the Open Development of Scientific Software , 2012, PLoS Comput. Biol..
[6] Torsten Rohlfing,et al. Image Similarity and Tissue Overlaps as Surrogates for Image Registration Accuracy: Widely Used but Unreliable , 2012, IEEE Transactions on Medical Imaging.
[7] Guojie Li,et al. From the Editor-in-Chief , 1995, Journal of Computer Science and Technology.
[8] Ed Vul,et al. Voodoo and circularity errors , 2012, NeuroImage.
[9] Arno Klein,et al. A reproducible evaluation of ANTs similarity metric performance in brain image registration , 2011, NeuroImage.
[10] David H. Wolpert,et al. No free lunch theorems for optimization , 1997, IEEE Trans. Evol. Comput..
[11] Satrajit S. Ghosh,et al. Nipype: A Flexible, Lightweight and Extensible Neuroimaging Data Processing Framework in Python , 2011, Front. Neuroinform..
[12] Bruce Fischl,et al. FreeSurfer , 2012, NeuroImage.
[13] Sébastien Ourselin,et al. A comparison of voxel and surface based cortical thickness estimation methods , 2011, NeuroImage.
[14] Arthur W. Toga,et al. Online resource for validation of brain segmentation methods , 2009, NeuroImage.
[15] D. Louis Collins,et al. BEaST: Brain extraction based on nonlocal segmentation technique , 2012, NeuroImage.
[16] Arno Klein,et al. Evaluation of 14 nonlinear deformation algorithms applied to human brain MRI registration , 2009, NeuroImage.
[17] Brian B. Avants,et al. The optimal template effect in hippocampus studies of diseased populations , 2010, NeuroImage.
[18] Max A. Viergever,et al. elastix: A Toolbox for Intensity-Based Medical Image Registration , 2010, IEEE Transactions on Medical Imaging.
[19] J. Gee,et al. Logical circularity in voxel‐based analysis: Normalization strategy may induce statistical bias , 2014, Human brain mapping.
[20] Milan Sonka,et al. 3D Slicer as an image computing platform for the Quantitative Imaging Network. , 2012, Magnetic resonance imaging.
[21] Ron Mengelers,et al. The Effects of FreeSurfer Version, Workstation Type, and Macintosh Operating System Version on Anatomical Volume and Cortical Thickness Measurements , 2012, PloS one.
[22] John Ashburner,et al. SPM: A history , 2012, NeuroImage.
[23] Dinggang Shen,et al. S‐HAMMER: Hierarchical attribute‐guided, symmetric diffeomorphic registration for MR brain images , 2014, Human brain mapping.
[24] W. K. Simmons,et al. Circular analysis in systems neuroscience: the dangers of double dipping , 2009, Nature Neuroscience.
[25] Dinggang Shen,et al. Hierarchical Attribute-Guided Symmetric Diffeomorphic Registration for MR Brain Images , 2012, MICCAI.
[26] Brian B. Avants,et al. Bias in estimation of hippocampal atrophy using deformation-based morphometry arises from asymmetric global normalization: An illustration in ADNI 3 T MRI data , 2010, NeuroImage.
[27] D. Louis Collins,et al. Automated segmentation of basal ganglia and deep brain structures in MRI of Parkinson’s disease , 2012, International Journal of Computer Assisted Radiology and Surgery.
[28] D. Sackett. Bias in analytic research. , 1979, Journal of chronic diseases.