In silico study of wall-associated kinase family reveals large-scale genomic expansion potentially connected with functional diversification in Populus
暂无分享,去创建一个
S. Maury | G. Bronner | P. Label | S. Bourgerie | J. Julien | Jérôme Franchel | J. Venisse | D. Auguin | B. Fumanal | B. Muries | P. Roeckel-Drevet | Kévin Tocquard | D. Lopez | Clément Lafon‐Placette
[1] E. Birney,et al. Pfam: the protein families database , 2013, Nucleic Acids Res..
[2] D. Hwang. Cation-π Interaction , 2013 .
[3] B. D. Kohorn,et al. A dominant allele of Arabidopsis pectin-binding wall-associated kinase induces a stress response suppressed by MPK6 but not MPK3 mutations. , 2012, Molecular plant.
[4] Sebastian Wolf,et al. Growth control and cell wall signaling in plants. , 2012, Annual review of plant biology.
[5] D. Combes,et al. Light-mediated K(leaf) induction and contribution of both the PIP1s and PIP2s aquaporins in five tree species: walnut (Juglans regia) case study. , 2012, Tree physiology.
[6] C. Maurel,et al. Insights into Populus XIP aquaporins: evolutionary expansion, protein functionality, and environmental regulation. , 2012, Journal of experimental botany.
[7] David M. Goodstein,et al. Phytozome: a comparative platform for green plant genomics , 2011, Nucleic Acids Res..
[8] M. Nei,et al. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. , 2011, Molecular biology and evolution.
[9] M. Petz,et al. La enhances IRES-mediated translation of laminin B1 during malignant epithelial to mesenchymal transition , 2011, Nucleic acids research.
[10] E. Freisinger. Structural features specific to plant metallothioneins , 2011, JBIC Journal of Biological Inorganic Chemistry.
[11] Peer Bork,et al. Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy , 2011, Nucleic Acids Res..
[12] S. Duplessis,et al. Genome-wide analysis of eukaryote thaumatin-like proteins (TLPs) with an emphasis on poplar , 2011, BMC Plant Biology.
[13] Narmada Thanki,et al. CDD: a Conserved Domain Database for the functional annotation of proteins , 2010, Nucleic Acids Res..
[14] M. Martin-Magniette,et al. Comparative transcriptomics of drought responses in Populus: a meta-analysis of genome-wide expression profiling in mature leaves and root apices across two genotypes , 2010, BMC Genomics.
[15] Erin T. Hamanishi,et al. Intraspecific variation in the Populus balsamifera drought transcriptome. , 2010, Plant, cell & environment.
[16] M. Münsterkötter,et al. Transcriptome responses to aluminum stress in roots of aspen (Populus tremula) , 2010, BMC Plant Biology.
[17] J. Salojärvi,et al. Transcriptional regulation of the CRK/DUF26 group of Receptor-like protein kinases by ozone and plant hormones in Arabidopsis , 2010, BMC Plant Biology.
[18] Haibao Tang,et al. Insights from the comparison of plant genome sequences. , 2010, Annual review of plant biology.
[19] A. Macone,et al. A domain swap approach reveals a role of the plant wall-associated kinase 1 (WAK1) as a receptor of oligogalacturonides , 2010, Proceedings of the National Academy of Sciences.
[20] Chris Gehring,et al. The Arabidopsis Wall Associated Kinase-Like 10 Gene Encodes a Functional Guanylyl Cyclase and Is Co-Expressed with Pathogen Defense Related Genes , 2010, PloS one.
[21] Ting Lan,et al. Extensive Functional Diversification of the Populus Glutathione S-Transferase Supergene Family[C][W] , 2009, The Plant Cell Online.
[22] B. D. Kohorn,et al. Pectin activation of MAP kinase and gene expression is WAK2 dependent. , 2009, The Plant journal : for cell and molecular biology.
[23] Nicholas J Provart,et al. Genotype and time of day shape the Populus drought response. , 2009, The Plant journal : for cell and molecular biology.
[24] T. Tschaplinski,et al. Poplar Genomics: State of the Science , 2009 .
[25] I. Major,et al. Expression profiling and functional analysis of Populus WRKY23 reveals a regulatory role in defense. , 2009, The New phytologist.
[26] Stefan Jansson,et al. The Populus Genome Integrative Explorer (PopGenIE): a new resource for exploring the Populus genome. , 2009, The New phytologist.
[27] Mikael Bodén,et al. MEME Suite: tools for motif discovery and searching , 2009, Nucleic Acids Res..
[28] Hui Li,et al. A novel wall-associated receptor-like protein kinase gene, OsWAK1, plays important roles in rice blast disease resistance , 2009, Plant Molecular Biology.
[29] A. Séguin,et al. Transcriptome profiling in hybrid poplar following interactions with Melampsora rust fungi. , 2009, Molecular plant-microbe interactions : MPMI.
[30] Justin Foong,et al. Expansion and Diversification of the Populus R2R3-MYB Family of Transcription Factors1[W][OA] , 2008, Plant Physiology.
[31] Melissa D. Lehti-Shiu,et al. Importance of Lineage-Specific Expansion of Plant Tandem Duplicates in the Adaptive Response to Environmental Stimuli1[W][OA] , 2008, Plant Physiology.
[32] B. Meyers,et al. Genome-wide identification of NBS resistance genes in Populus trichocarpa , 2008, Plant Molecular Biology.
[33] D. Bonetta,et al. Sentinels at the wall: cell wall receptors and sensors. , 2007, The New phytologist.
[34] Jonathan D. G. Jones,et al. The plant immune system , 2006, Nature.
[35] Frank W Telewski,et al. A unified hypothesis of mechanoperception in plants. , 2006, American journal of botany.
[36] M. Gribskov,et al. The Genome of Black Cottonwood, Populus trichocarpa (Torr. & Gray) , 2006, Science.
[37] Masaru Kobayashi,et al. Wall-associated kinase 1 (WAK1) is crosslinked in endomembranes, and transport to the cell surface requires correct cell-wall synthesis , 2006, Journal of Cell Science.
[38] Annick Thomas,et al. In vitro characterization of the homogalacturonan-binding domain of the wall-associated kinase WAK1 using site-directed mutagenesis. , 2006, Phytochemistry.
[39] Xinxiang Peng,et al. Involvement of a Cell Wall-Associated Kinase, WAKL4, in Arabidopsis Mineral Responses1[W] , 2005, Plant Physiology.
[40] Lei Li,et al. Evolutionary Expansion, Gene Structure, and Expression of the Rice Wall-Associated Kinase Gene Family1[w] , 2005, Plant Physiology.
[41] Lina L. Feng,et al. Evolution of distinct EGF domains with specific functions , 2005, Protein science : a publication of the Protein Society.
[42] Richard C. Moore,et al. The evolutionary dynamics of plant duplicate genes. , 2005, Current opinion in plant biology.
[43] M. Bucan,et al. Promoter features related to tissue specificity as measured by Shannon entropy , 2005, Genome Biology.
[44] A. Decreux,et al. Wall-associated kinase WAK1 interacts with cell wall pectins in a calcium-induced conformation. , 2005, Plant & cell physiology.
[45] Robert C. Edgar,et al. MUSCLE: multiple sequence alignment with high accuracy and high throughput. , 2004, Nucleic acids research.
[46] F. Baluška,et al. Cytoskeleton-Plasma Membrane-Cell Wall Continuum in Plants. Emerging Links Revisited1 , 2003, Plant Physiology.
[47] F. Baluška,et al. Aluminum-Induced Gene Expression and Protein Localization of a Cell Wall-Associated Receptor Kinase in Arabidopsis1 , 2003, Plant Physiology.
[48] S. Shiu,et al. Expansion of the Receptor-Like Kinase/Pelle Gene Family and Receptor-Like Proteins in Arabidopsis1[w] , 2003, Plant Physiology.
[49] A I Saeed,et al. TM4: a free, open-source system for microarray data management and analysis. , 2003, BioTechniques.
[50] Zheng-Hui He,et al. The Cell Wall-Associated Kinase (WAK) andWAK-Like Kinase Gene Family1 , 2002, Plant Physiology.
[51] S. Shiu,et al. Receptor-like kinases from Arabidopsis form a monophyletic gene family related to animal receptor kinases , 2001, Proceedings of the National Academy of Sciences of the United States of America.
[52] Zheng-Hui He,et al. Antisense Expression of a Cell Wall–Associated Protein Kinase, WAK4, Inhibits Cell Elongation and Alters Morphology , 2001, The Plant Cell Online.
[53] B. D. Kohorn,et al. Wall-Associated Kinases Are Expressed throughout Plant Development and Are Required for Cell Expansion , 2001, Plant Cell.
[54] J. Stenflo,et al. Calcium-binding EGF-like modules in coagulation proteinases: function of the calcium ion in module interactions. , 2000, Biochimica et biophysica acta.
[55] A. Holder,et al. Solution structure of an EGF module pair from the Plasmodium falciparum merozoite surface protein 1. , 1999, Journal of molecular biology.
[56] Zheng-Hui He,et al. A cluster of five cell wall-associated receptor kinase genes, Wak1–5, are expressed in specific organs of Arabidopsis , 1999, Plant Molecular Biology.
[57] Z. He,et al. Requirement for the induced expression of a cell wall associated receptor kinase for survival during the pathogen response. , 1998, The Plant journal : for cell and molecular biology.
[58] B. D. Kohorn,et al. A Cell Wall-associated, Receptor-like Protein Kinase* , 1996, The Journal of Biological Chemistry.
[59] P. Handford,et al. The structure of a Ca2+-binding epidermal growth factor-like domain: Its role in protein-protein interactions , 1995, Cell.
[60] H. Kishino,et al. Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in hominoidea , 1989, Journal of Molecular Evolution.
[61] P. Label,et al. The molecular mechanisms of reaction wood induction. , 2014 .
[62] R Core Team,et al. R: A language and environment for statistical computing. , 2014 .
[63] Melissa D. Lehti-Shiu,et al. Evolutionary History and Stress Regulation of Plant Receptor-Like Kinase/Pelle Genes , 2009 .
[64] Cheng Li,et al. Adjusting batch effects in microarray expression data using empirical Bayes methods. , 2007, Biostatistics.
[65] D. Swofford. PAUP*: Phylogenetic analysis using parsimony (*and other methods), Version 4.0b10 , 2002 .
[66] A. Leclercq,et al. ANATOMICAL CHARACTERISTICS OF TENSION WOOD AND OPPOSITE WOOD IN YOUNG INCLINED STEMS OF POPLAR (POPULUS EURAMERICANA CV 'GHOY') , 2001 .
[67] M. P. Cummings,et al. PAUP* Phylogenetic analysis using parsimony (*and other methods) Version 4 , 2000 .
[68] D. Stuart,et al. The structure of a Ca(2+)-binding epidermal growth factor-like domain: its role in protein-protein interactions. , 1995, Cell.