Biological soft X-ray tomography on beamline 2.1 at the Advanced Light Source.

Beamline 2.1 (XM-2) is a transmission soft X-ray microscope in sector 2 of the Advanced Light Source at Lawrence Berkeley National Laboratory. XM-2 was designed, built and is now operated by the National Center for X-ray Tomography as a National Institutes of Health Biomedical Technology Research Resource. XM-2 is equipped with a cryogenic rotation stage to enable tomographic data collection from cryo-preserved cells, including large mammalian cells. During data collection the specimen is illuminated with `water window' X-rays (284-543 eV). Illuminating photons are attenuated an order of magnitude more strongly by biomolecules than by water. Consequently, differences in molecular composition generate quantitative contrast in images of the specimen. Soft X-ray tomography is an information-rich three-dimensional imaging method that can be applied either as a standalone technique or as a component modality in correlative imaging studies.

[1]  S. Rehbein,et al.  Cryo X-ray microscope with flat sample geometry for correlative fluorescence and nanoscale tomographic imaging. , 2012, Journal of structural biology.

[2]  Chao Yang,et al.  Automatic alignment and reconstruction of images for soft X-ray tomography. , 2012, Journal of structural biology.

[3]  Gerry McDermott,et al.  Soft X-ray tomography and cryogenic light microscopy: the cool combination in cellular imaging. , 2009, Trends in cell biology.

[4]  Roger W. Falcone,et al.  New directions in X-ray microscopy , 2011 .

[5]  Gerry McDermott,et al.  Soft X-ray tomography of phenotypic switching and the cellular response to antifungal peptoids in Candida albicans , 2009, Proceedings of the National Academy of Sciences.

[6]  H. Funsten,et al.  Fundamental limits to detection of low-energy ions using silicon solid-state detectors , 2004 .

[7]  G. McDermott,et al.  Nanoimaging cells using soft X-ray tomography. , 2013, Methods in molecular biology.

[8]  S. Rehbein,et al.  Characterization of the resolving power and contrast transfer function of a transmission X-ray microscope with partially coherent illumination. , 2012, Optics express.

[9]  A. Sakdinawat,et al.  Nanoscale X-ray imaging , 2009 .

[10]  S. Rehbein,et al.  Correlative VIS-fluorescence and soft X-ray cryo-microscopy/tomography of adherent cells , 2012, Journal of structural biology.

[11]  K. Nugent,et al.  Imaging cellular architecture with X-rays. , 2010, Current opinion in structural biology.

[12]  Giovanni Cardone,et al.  A resolution criterion for electron tomography based on cross-validation. , 2005, Journal of structural biology.

[13]  Elizabeth A. Smith,et al.  Correlative microscopy methods that maximize specimen fidelity and data completeness, and improve molecular localization capabilities. , 2013, Journal of structural biology.

[14]  G. McDermott,et al.  High‐aperture cryogenic light microscopy , 2009, Journal of microscopy.

[15]  Gerry McDermott,et al.  X-ray tomography of whole cells. , 2005, Current opinion in structural biology.

[16]  Carolyn A. Larabell,et al.  Nuclear Aggregation of Olfactory Receptor Genes Governs Their Monogenic Expression , 2012, Cell.

[17]  Jörg Raabe,et al.  Advanced thin film technology for ultrahigh resolution X-ray microscopy. , 2009, Ultramicroscopy.

[18]  W. Chao,et al.  Real space soft x-ray imaging at 10 nm spatial resolution. , 2012, Optics express.

[19]  David T. Attwood,et al.  Transmission X-Ray Microscopy with 50 nm Resolution Installed at Ritsumeikan Synchrotron Radiation Center. , 1999 .

[20]  Achilleas S. Frangakis,et al.  3D Ultrastructural Organization of Whole Chlamydomonas reinhardtii Cells Studied by Nanoscale Soft X-Ray Tomography , 2012, PloS one.

[21]  B. Niemann,et al.  Tomographic imaging of biological specimens with the cryo transmission X-ray microscope , 2001 .

[22]  Gerd Schneider,et al.  Three-dimensional cellular ultrastructure resolved by X-ray microscopy , 2010, Nature Methods.

[23]  B. Niemann,et al.  Computed tomography of cryogenic biological specimens based on X-ray microscopic images. , 2000, Ultramicroscopy.

[24]  Elizabeth A. Smith,et al.  Putting Molecules in Their Place , 2014, Journal of cellular biochemistry.

[25]  D. Attwood Soft X-Rays and Extreme Ultraviolet Radiation , 1999 .

[26]  J. Kirz,et al.  Soft X-ray microscopes and their biological applications , 1995, Quarterly Reviews of Biophysics.

[27]  G. McDermott,et al.  Visualizing cell architecture and molecular location using soft x-ray tomography and correlated cryo-light microscopy. , 2012, Annual review of physical chemistry.

[28]  M. L. Le Gros,et al.  X-ray tomography generates 3-D reconstructions of the yeast, saccharomyces cerevisiae, at 60-nm resolution. , 2003, Molecular biology of the cell.