LINE-1 Evasion of Epigenetic Repression in Humans.
暂无分享,去创建一个
G. Faulkner | R. Lister | S. W. Cheetham | A. Ewing | Patricia E. Carreira | Sandra R. Richardson | J. García-Pérez | Angela Macia | L. Sánchez | S. R. Heras | Paul M. Brennan | M. García-Cañadas | Patricia Gerdes | F. Sánchez-Luque | Mischa Lundberg | Carmen Salvador-Palomeque | M. Muñoz-Lopez | J. S. Jesuadian | Marie-Jeanne Kempen | Robin-Lee Troskie | Dulce B. Vargas-Landin | M. Lundberg | M. García-Canãdas | Paul Brennan | Dulce B. Vargas-Landín
[1] G. Faulkner,et al. Dynamic Methylation of an L1 Transduction Family during Reprogramming and Neurodifferentiation , 2019, Molecular and Cellular Biology.
[2] G. Faulkner,et al. L1 Retrotransposon Heterogeneity in Ovarian Tumor Cell Evolution. , 2018, Cell reports.
[3] J. Boeke,et al. Transcription factor profiling reveals molecular choreography and key regulators of human retrotransposon expression , 2018, Proceedings of the National Academy of Sciences.
[4] Helen M. Rowe,et al. The HUSH complex cooperates with TRIM28 to repress young retrotransposons and new genes , 2018, Genome research.
[5] G. Faulkner,et al. L1 retrotransposition is a common feature of mammalian hepatocarcinogenesis , 2018, Genome research.
[6] T. Swigut,et al. Selective silencing of euchromatic L1s revealed by genome-wide screens for L1 regulators , 2017, Nature.
[7] Geoffrey J Faulkner,et al. L1 Mosaicism in Mammals: Extent, Effects, and Evolution. , 2017, Trends in genetics : TIG.
[8] Yixuan Wang,et al. The Role of KRAB-ZFPs in Transposable Element Repression and Mammalian Evolution. , 2017, Trends in genetics : TIG.
[9] Ryan E. Mills,et al. The Mobile Element Locator Tool (MELT): population-scale mobile element discovery and biology , 2017, Genome research.
[10] D. Trono,et al. KRAB zinc finger proteins , 2017, Development.
[11] J. V. Moran,et al. Mobile DNA in Health and Disease , 2017, The New England journal of medicine.
[12] K. Burns. Transposable elements in cancer , 2017, Nature Reviews Cancer.
[13] S. Devine,et al. The Role of Somatic L1 Retrotransposition in Human Cancers , 2017, Viruses.
[14] G. Faulkner,et al. Heritable L1 retrotransposition in the mouse primordial germline and early embryo , 2017, Genome research.
[15] Ryan E. Mills,et al. Intersection of diverse neuronal genomes and neuropsychiatric disease: The Brain Somatic Mosaicism Network , 2017, Science.
[16] D. Trono,et al. KRAB zinc-finger proteins contribute to the evolution of gene regulatory networks , 2017, Nature.
[17] A. Muotri,et al. Engineered LINE-1 retrotransposition in nondividing human neurons , 2017, Genome research.
[18] Andrew Emili,et al. Multiparameter functional diversity of human C2H2 zinc finger proteins , 2016, Genome research.
[19] J. Houseley,et al. TET-dependent regulation of retrotransposable elements in mouse embryonic stem cells , 2016, Genome Biology.
[20] F. Gage,et al. L1-associated genomic regions are deleted in somatic cells of the healthy human brain , 2016, Nature Neuroscience.
[21] K. Burns,et al. Somatically Acquired LINE‐1 Insertions in Normal Esophagus Undergo Clonal Expansion in Esophageal Squamous Cell Carcinoma , 2016, Human mutation.
[22] J. Goodier. Restricting retrotransposons: a review , 2016, Mobile DNA.
[23] S. Devine,et al. A hot L1 retrotransposon evades somatic repression and initiates human colorectal cancer , 2016, Genome research.
[24] J. Vera-Otarola,et al. Activation of individual L1 retrotransposon instances is restricted to cell-type dependent permissive loci , 2016, eLife.
[25] Helen M. Rowe,et al. Transposable Elements and Their KRAB-ZFP Controllers Regulate Gene Expression in Adult Tissues. , 2016, Developmental cell.
[26] Aurélie Teissandier,et al. An epigenetic switch ensures transposon repression upon dynamic loss of DNA methylation in embryonic stem cells , 2016, eLife.
[27] Balázs Sarkadi,et al. Reprogramming triggers endogenous L1 and Alu retrotransposition in human induced pluripotent stem cells , 2016, Nature Communications.
[28] F. Gage,et al. Primate-Specific ORF0 Contributes to Retrotransposon-Mediated Diversity , 2015, Cell.
[29] Gabor T. Marth,et al. An integrated map of structural variation in 2,504 human genomes , 2015, Nature.
[30] Akhilesh Pandey,et al. Widespread somatic L1 retrotransposition occurs early during gastrointestinal cancer evolution , 2015, Genome research.
[31] Leanne S. Whitmore,et al. Retrotransposition creates sloping shores: a graded influence of hypomethylated CpG islands on flanking CpG sites , 2015, Genome research.
[32] Geoffrey J. Faulkner,et al. Ubiquitous L1 Mosaicism in Hippocampal Neurons , 2015, Cell.
[33] J. Rinn,et al. Targeted disruption of DNMT1, DNMT3A and DNMT3B in human embryonic stem cells , 2015, Nature Genetics.
[34] E. Füchtbauer,et al. The KRAB zinc finger protein ZFP809 is required to initiate epigenetic silencing of endogenous retroviruses , 2015, Genes & development.
[35] Edwin Cuppen,et al. Sambamba: fast processing of NGS alignment formats , 2015, Bioinform..
[36] C. Walsh,et al. Cell Lineage Analysis in Human Brain Using Endogenous Retroelements , 2015, Neuron.
[37] Paul Theodor Pyl,et al. HTSeq – A Python framework to work with high-throughput sequencing data , 2014, bioRxiv.
[38] David Haussler,et al. An evolutionary arms race between KRAB zinc finger genes 91/93 and SVA/L1 retrotransposons , 2014, Nature.
[39] Andrew Menzies,et al. Extensive transduction of nonrepetitive DNA mediated by L1 retrotransposition in cancer genomes , 2014, Science.
[40] D. Trono,et al. Evolutionally dynamic L1 regulation in embryonic stem cells , 2014, Genes & development.
[41] D. Trono,et al. Interplay of TRIM28 and DNA methylation in controlling human endogenous retroelements , 2014, Genome research.
[42] S. Quake,et al. Linkage disequilibrium and signatures of positive selection around LINE-1 retrotransposons in the human genome , 2014, Proceedings of the National Academy of Sciences.
[43] Gad Getz,et al. Somatic retrotransposition in human cancer revealed by whole-genome and exome sequencing , 2014, Genome research.
[44] Björn Usadel,et al. Trimmomatic: a flexible trimmer for Illumina sequence data , 2014, Bioinform..
[45] Cesare Furlanello,et al. A promoter-level mammalian expression atlas , 2015 .
[46] Michael Q. Zhang,et al. BS-Seeker2: a versatile aligning pipeline for bisulfite sequencing data , 2013, BMC Genomics.
[47] Gene W. Yeo,et al. Differential LINE-1 regulation in pluripotent stem cells of humans and other great apes , 2013, Nature.
[48] Mireya Plass,et al. The Microprocessor controls the activity of mammalian retrotransposons , 2013, Nature Structural &Molecular Biology.
[49] S. Goff,et al. Proviral silencing in embryonic cells is regulated by Yin Yang 1. , 2013, Cell reports.
[50] Heng Li. Aligning sequence reads, clone sequences and assembly contigs with BWA-MEM , 2013, 1303.3997.
[51] Wenfeng An,et al. LINE-1-derived poly(A) microsatellites undergo rapid shortening and create somatic and germline mosaicism in mice. , 2013, Molecular biology and evolution.
[52] X. Xie,et al. Genome-Wide Detection of Single-Nucleotide and Copy-Number Variations of a Single Human Cell , 2012, Science.
[53] C. Walsh,et al. Single-Neuron Sequencing Analysis of L1 Retrotransposition and Somatic Mutation in the Human Brain , 2012, Cell.
[54] Lovelace J. Luquette,et al. Landscape of Somatic Retrotransposition in Human Cancers , 2012, Science.
[55] Raymond K. Auerbach,et al. An Integrated Encyclopedia of DNA Elements in the Human Genome , 2012, Nature.
[56] G. Hon,et al. Base-Resolution Analysis of 5-Hydroxymethylcytosine in the Mammalian Genome , 2012, Cell.
[57] Gautier Koscielny,et al. Ensembl 2012 , 2011, Nucleic Acids Res..
[58] J. Mattick,et al. Somatic retrotransposition alters the genetic landscape of the human brain , 2011, Nature.
[59] Adrian M. Stütz,et al. A Comprehensive Map of Mobile Element Insertion Polymorphisms in Humans , 2011, PLoS genetics.
[60] Deniz Yorukoglu,et al. Alu repeat discovery and characterization within human genomes. , 2011, Genome research.
[61] H. Kazazian,et al. Whole-genome resequencing allows detection of many rare LINE-1 insertion alleles in humans. , 2011, Genome research.
[62] Fred H. Gage,et al. A Model for Neural Development and Treatment of Rett Syndrome Using Human Induced Pluripotent Stem Cells , 2010, Cell.
[63] J. L. Cortés,et al. Epigenetic Control of Retrotransposon Expression in Human Embryonic Stem Cells , 2010, Molecular and Cellular Biology.
[64] Fred H. Gage,et al. L1 retrotransposition in neurons is modulated by MeCP2 , 2010, Nature.
[65] H. Kazazian,et al. High-throughput sequencing reveals extensive variation in human-specific L1 content in individual human genomes. , 2010, Genome research.
[66] J. V. Moran,et al. Epigenetic silencing of engineered L1 retrotransposition events in human embryonic carcinoma cells , 2010, Nature.
[67] Jinchuan Xing,et al. Mobile element scanning (ME-Scan) by targeted high-throughput sequencing , 2010, BMC Genomics.
[68] Andrew F. Neuwald,et al. Natural Mutagenesis of Human Genomes by Endogenous Retrotransposons , 2010, Cell.
[69] Evan E. Eichler,et al. LINE-1 Retrotransposition Activity in Human Genomes , 2010, Cell.
[70] Helen M. Rowe,et al. KAP1 controls endogenous retroviruses in embryonic stem cells , 2010, Nature.
[71] Davis J. McCarthy,et al. edgeR: a Bioconductor package for differential expression analysis of digital gene expression data , 2009, Bioinform..
[72] P. Cartron,et al. Dnmt3/transcription factor interactions as crucial players in targeted DNA methylation , 2009, Epigenetics.
[73] Gene W. Yeo,et al. L1 retrotransposition in human neural progenitor cells , 2009, Nature.
[74] J. Kawai,et al. The regulated retrotransposon transcriptome of mammalian cells , 2009, Nature Genetics.
[75] Ravi Sachidanandam,et al. A piRNA pathway primed by individual transposons is linked to de novo DNA methylation in mice. , 2008, Molecular cell.
[76] Clifford A. Meyer,et al. Model-based Analysis of ChIP-Seq (MACS) , 2008, Genome Biology.
[77] Masaaki Oda,et al. QUMA: quantification tool for methylation analysis , 2008, Nucleic Acids Res..
[78] P. D. de Jong,et al. L1 retrotransposition can occur early in human embryonic development. , 2007, Human molecular genetics.
[79] Ryan E. Mills,et al. Which transposable elements are active in the human genome? , 2007, Trends in genetics : TIG.
[80] Tomohiro Hayakawa,et al. Maintenance of self‐renewal ability of mouse embryonic stem cells in the absence of DNA methyltransferases Dnmt1, Dnmt3a and Dnmt3b , 2006, Genes to cells : devoted to molecular & cellular mechanisms.
[81] Deepak Grover,et al. dbRIP: A highly integrated database of retrotransposon insertion polymorphisms in humans , 2006, Human mutation.
[82] Stéphane Boissinot,et al. Molecular evolution and tempo of amplification of human LINE-1 retrotransposons since the origin of primates. , 2005, Genome research.
[83] Fred H. Gage,et al. Somatic mosaicism in neuronal precursor cells mediated by L1 retrotransposition , 2005, Nature.
[84] O. Weichenrieder,et al. Crystal structure of the targeting endonuclease of the human LINE-1 retrotransposon. , 2004, Structure.
[85] N. Yang,et al. An important role for RUNX3 in human L1 transcription and retrotransposition. , 2003, Nucleic acids research.
[86] J. V. Moran,et al. Hot L1s account for the bulk of retrotransposition in the human population , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[87] E. Ostertag,et al. Twin priming: a proposed mechanism for the creation of inversions in L1 retrotransposition. , 2001, Genome research.
[88] A. Jeltsch,et al. Enzymatic properties of recombinant Dnmt3a DNA methyltransferase from mouse: the enzyme modifies DNA in a non-processive manner and also methylates non-CpA sites 1 1 Edited by J. Karn , 2001 .
[89] M. Speek. Antisense Promoter of Human L1 Retrotransposon Drives Transcription of Adjacent Cellular Genes , 2001, Molecular and Cellular Biology.
[90] M. Boguski,et al. Frequent human genomic DNA transduction driven by LINE-1 retrotransposition. , 2000, Genome research.
[91] J. V. Moran,et al. Determination of L1 retrotransposition kinetics in cultured cells. , 2000, Nucleic acids research.
[92] E. Ostertag,et al. Transduction of 3'-flanking sequences is common in L1 retrotransposition. , 2000, Human molecular genetics.
[93] J. V. Moran,et al. Exon shuffling by L1 retrotransposition. , 1999, Science.
[94] J. V. Moran,et al. Many human L1 elements are capable of retrotransposition , 1997, Nature Genetics.
[95] Y. Sakaki,et al. Identification of critical CpG sites for repression of L1 transcription by DNA methylation. , 1997, Gene.
[96] J. Jurka,et al. Sequence patterns indicate an enzymatic involvement in integration of mammalian retroposons. , 1997, Proceedings of the National Academy of Sciences of the United States of America.
[97] Jef D Boeke,et al. Human L1 Retrotransposon Encodes a Conserved Endonuclease Required for Retrotransposition , 1996, Cell.
[98] Jef D Boeke,et al. High Frequency Retrotransposition in Cultured Mammalian Cells , 1996, Cell.
[99] H. Kazazian,et al. A new retrotransposable human L1 element from the LRE2 locus on chromosome 1q produces a chimaeric insertion , 1994, Nature Genetics.
[100] R. E. Thayer,et al. Binding of the ubiquitous nuclear transcription factor YY1 to a cis regulatory sequence in the human LINE-1 transposable element. , 1993, Human molecular genetics.
[101] A. F. Scott,et al. Two additional potential retrotransposons isolated from a human L1 subfamily that contains an active retrotransposable element. , 1993, Proceedings of the National Academy of Sciences of the United States of America.
[102] T. Eickbush,et al. Reverse transcription of R2Bm RNA is primed by a nick at the chromosomal target site: A mechanism for non-LTR retrotransposition , 1993, Cell.
[103] G. Swergold. Identification, characterization, and cell specificity of a human LINE-1 promoter , 1990, Molecular and cellular biology.
[104] Piero Carninci,et al. Edinburgh Research Explorer Endogenous Retrotransposition Activates Oncogenic Pathways in Hepatocellular Carcinoma Endogenous Retrotransposition Activates Oncogenic Pathways in Hepatocellular Carcinoma , 2022 .
[105] G. Faulkner,et al. Analysis of Somatic LINE-1 Insertions in Neurons , 2017 .
[106] J. V. Moran,et al. LINE-1 Cultured Cell Retrotransposition Assay. , 2016, Methods in molecular biology.
[107] Thomas R. Gingeras,et al. STAR: ultrafast universal RNA-seq aligner , 2013, Bioinform..
[108] Gene W. Yeo,et al. Differential L 1 regulation in pluripotent stem cells of humans and apes , 2013 .
[109] J. V. Moran,et al. Reprogramming somatic cells into iPS cells activates LINE-1 retroelement mobility. , 2012, Human molecular genetics.
[110] Kevin A. Pelphrey,et al. Genome-Wide Detection of Single-Nucleotide and Copy-Number Variations of a Single Human Cell , 2012 .
[111] S. Salzberg,et al. FLASH: fast length adjustment of short reads to improve genome assemblies , 2011, Bioinform..
[112] Joomyeong Kim,et al. YY1's longer DNA-binding motifs. , 2009, Genomics.
[113] J. V. Moran,et al. A YY1-binding site is required for accurate human LINE-1 transcription initiation. , 2004, Nucleic acids research.
[114] H. Varmus. Reverse transcription. , 1987, Scientific American.
[115] M. Batzer,et al. LSU Digital Commons LSU Digital Commons Mobile element scanning (ME-Scan) identifies thousands of novel Mobile element scanning (ME-Scan) identifies thousands of novel Alu insertions in diverse human populations Alu insertions in diverse human populations , 2022 .