Asaia siamensis sp. nov., an acetic acid bacterium in the alpha-proteobacteria.

Five bacterial strains were isolated from tropical flowers collected in Thailand and Indonesia by the enrichment culture approach for acetic acid bacteria. Phylogenetic analysis based on 16S rRNA gene sequences showed that the isolates were located within the cluster of the genus Asaia. The isolates constituted a group separate from Asaia bogorensis on the basis of DNA relatedness values. Their DNA G+C contents were 58.6-59.7 mol%, with a range of 1.1 mol%, which were slightly lower than that of A. bogorensis (59.3-61.0 mol%), the type species of the genus Asaia. The isolates had morphological, physiological and biochemical characteristics similar to A. bogorensis strains, but the isolates did not produce acid from dulcitol. On the basis of the results obtained, the name Asaia siamensis sp. nov. is proposed for these isolates. Strain S60-1T, isolated from a flower of crown flower (dok rak, Calotropis gigantea) collected in Bangkok, Thailand, was designated the type strain ( = NRIC 0323T = JCM 10715T = IFO 16457T).

[1]  M. Kimura A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences , 1980, Journal of Molecular Evolution.

[2]  A. Hirata,et al.  Is intracytoplasmic membrane structure a generic criterion? It does not coincide with phylogenetic interrelationships among phototrophic purple nonsulfur bacteria , 2004, Archives of Microbiology.

[3]  Y. Yamada,et al.  Asaia bogorensis gen. nov., sp. nov., an unusual acetic acid bacterium in the alpha-Proteobacteria. , 2000, International journal of systematic and evolutionary microbiology.

[4]  Y. Widyastuti,et al.  Identification of acetic acid bacteria isolated from Indonesian sources, especially of isolates classified in the genus Gluconobacter. , 1999, The Journal of general and applied microbiology.

[5]  Y. Yamada,et al.  The phylogeny of acetic acid bacteria based on the partial sequences of 16S ribosomal RNA: the elevation of the subgenus Gluconoacetobacter to the generic level. , 1997, Bioscience, biotechnology, and biochemistry.

[6]  J. Thompson,et al.  CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. , 1994, Nucleic acids research.

[7]  Takayuki Ezaki,et al.  Fluorometric Deoxyribonucleic Acid-Deoxyribonucleic Acid Hybridization in Microdilution Wells as an Alternative to Membrane Filter Hybridization in which Radioisotopes Are Used To Determine Genetic Relatedness among Bacterial Strains , 1989 .

[8]  K. Komagata,et al.  Acidomonas gen. nov., incorporating Acetobacter methanolicus as Acidomonas methanolica comb. nov , 1989 .

[9]  N. Saitou,et al.  The neighbor-joining method: a new method for reconstructing phylogenetic trees. , 1987, Molecular biology and evolution.

[10]  J. Felsenstein CONFIDENCE LIMITS ON PHYLOGENIES: AN APPROACH USING THE BOOTSTRAP , 1985, Evolution; international journal of organic evolution.

[11]  K. Komagata,et al.  Determination of DNA base composition by reversed-phase high-performance liquid chromatography , 1984 .

[12]  T. Ezaki,et al.  Transfer of Peptococcus indolicus, Peptococcus asaccharolyticus, Peptococcus prevotii, and Peptococcus magnus to the Genus Peptostreptococcus and Proposal of Peptostreptococcus tetradius sp. nov. , 1983 .

[13]  J. Tamaoka,et al.  Analysis of bacterial menaquinone mixtures by high performance liquid chromatography , 1983 .

[14]  H. Noller,et al.  Gene organization and primary structure of a ribosomal RNA operon from Escherichia coli. , 1981, Journal of molecular biology.

[15]  K. Kondo,et al.  ISOLATION AND CHARACTERIZATION OF "POLARLY FLAGELLATED INTERMEDIATE STRAINS" IN ACETIC ACID BACTERIA , 1976 .

[16]  Y. Yamada,et al.  Enzymatic studies on the oxidation of sugar and sugar alcohol. I. Purification and properties of particle-bound fructose dehydrogenase. , 1967, Journal of biochemistry.

[17]  H. Iizuka,et al.  THE FLAGELLATION AND TAXONOMY OF GENERA GLUCONOBACTER AND ACETOBACTER WITH REFERENCE TO THE EXISTENCE OF INTERMEDIATE STRAINS , 1964 .

[18]  J. Marmur A procedure for the isolation of deoxyribonucleic acid from micro-organisms , 1961 .