Ongoing GC-Biased Evolution Is Widespread in the Human Genome and Enriched Near Recombination Hot Spots
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David Haussler | Katherine S. Pollard | Sol Katzman | D. Haussler | K. Pollard | Sol Katzman | J. Capra | John A. Capra
[1] David Haussler,et al. Forces Shaping the Fastest Evolving Regions in the Human Genome , 2006, PLoS genetics.
[2] Laurent Duret,et al. The Impact of Recombination on Nucleotide Substitutions in the Human Genome , 2008, PLoS genetics.
[3] N. M. Hollingsworth,et al. Does Chromosome Size Affect Map Distance and Genetic Interference in Budding Yeast? , 2004, Genetics.
[4] A. Jeffreys,et al. Allelic recombination and de novo deletions in sperm in the human beta-globin gene region. , 2006, Human molecular genetics.
[5] G. McVean,et al. Estimating Meiotic Gene Conversion Rates From Population Genetic Data , 2007, Genetics.
[6] D. Gudbjartsson,et al. A high-resolution recombination map of the human genome , 2002, Nature Genetics.
[7] K. Pollard,et al. Hotspots of Biased Nucleotide Substitutions in Human Genes , 2009, PLoS biology.
[8] P. Donnelly,et al. A Fine-Scale Map of Recombination Rates and Hotspots Across the Human Genome , 2005, Science.
[9] T. Nagylaki. Evolution of a finite population under gene conversion. , 1983, Proceedings of the National Academy of Sciences of the United States of America.
[10] Terrence S. Furey,et al. Generation and annotation of the DNA sequences of human chromosomes 2 and 4 , 2005, Nature.
[11] D. Bamber. The area above the ordinal dominance graph and the area below the receiver operating characteristic graph , 1975 .
[12] L. Duret,et al. Adaptation or biased gene conversion? Extending the null hypothesis of molecular evolution. , 2007, Trends in genetics : TIG.
[13] P. Stenson,et al. Meiotic recombination favors the spreading of deleterious mutations in human populations , 2011, Human mutation.
[14] T. Jukes,et al. The neutral theory of molecular evolution. , 2000, Genetics.
[15] A. Helwak,et al. High Guanine and Cytosine Content Increases mRNA Levels in Mammalian Cells , 2006, PLoS biology.
[16] Laurent Duret,et al. A new perspective on isochore evolution. , 2006, Gene.
[17] L. Duret,et al. GC Content Evolution of the Human and Mouse Genomes: Insights from the Study of Processed Pseudogenes in Regions of Different Recombination Rates , 2006, Journal of Molecular Evolution.
[18] Hans Ellegren,et al. Male-driven biased gene conversion governs the evolution of base composition in human alu repeats. , 2005, Molecular biology and evolution.
[19] A. Visel,et al. Response to Comment on "Human-Specific Gain of Function in a Developmental Enhancer" , 2009, Science.
[20] E. Birney,et al. Genome-wide nucleotide-level mammalian ancestor reconstruction. , 2008, Genome research.
[21] G. Coop,et al. An evolutionary view of human recombination , 2007, Nature Reviews Genetics.
[22] M. Webster,et al. Fixation biases affecting human SNPs. , 2004, Trends in genetics : TIG.
[23] L. Duret,et al. Comment on "Human-Specific Gain of Function in a Developmental Enhancer" , 2009, Science.
[24] Hans Ellegren,et al. Compositional evolution of noncoding DNA in the human and chimpanzee genomes. , 2003, Molecular biology and evolution.
[25] Broome,et al. Literature cited , 1924, A Guide to the Carnivores of Central America.
[26] Colin N. Dewey,et al. Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution , 2004, Nature.
[27] Peter Donnelly,et al. A common sequence motif associated with recombination hot spots and genome instability in humans , 2008, Nature Genetics.
[28] Ryan D. Hernandez,et al. Context-dependent mutation rates may cause spurious signatures of a fixation bias favoring higher GC-content in humans. , 2007, Molecular biology and evolution.
[29] D. Altshuler,et al. A map of human genome variation from population-scale sequencing , 2010, Nature.
[30] A. Clark,et al. Local rates of recombination are positively correlated with GC content in the human genome. , 2001, Molecular biology and evolution.
[31] D. Kaback,et al. Chromosome size-dependent control of meiotic reciprocal recombination in Saccharomyces cerevisiae: the role of crossover interference. , 1999, Genetics.
[32] Ryan D. Hernandez,et al. Context dependence, ancestral misidentification, and spurious signatures of natural selection. , 2007, Molecular biology and evolution.
[33] D. Haussler,et al. GC-Biased Evolution Near Human Accelerated Regions , 2010, PLoS genetics.
[34] W. G. Hill,et al. The effect of linkage on limits to artificial selection. , 1966, Genetical research.
[35] Jonathan Romiguier,et al. Contrasting GC-content dynamics across 33 mammalian genomes: relationship with life-history traits and chromosome sizes. , 2010, Genome research.
[36] V. Guacci,et al. Chromosome size-dependent control of meiotic recombination. , 1992, Science.
[37] K. Pollard,et al. Substitution Patterns Are GC-Biased in Divergent Sequences across the Metazoans , 2011, Genome biology and evolution.
[38] Zhaohui S. Qin,et al. A second generation human haplotype map of over 3.1 million SNPs , 2007, Nature.
[39] G. Marais,et al. Biased gene conversion: implications for genome and sex evolution. , 2003, Trends in genetics : TIG.
[40] G Bernardi,et al. The mosaic genome of warm-blooded vertebrates. , 1985, Science.
[41] Laurence D. Hurst,et al. The evolution of isochores , 2001, Nature Reviews Genetics.
[42] M. Kimura. The Neutral Theory of Molecular Evolution: Introduction , 1983 .
[43] L. Duret,et al. Recombination drives the evolution of GC-content in the human genome. , 2004, Molecular biology and evolution.
[44] Tom H. Pringle,et al. The human genome browser at UCSC. , 2002, Genome research.
[45] Peter Donnelly,et al. The Influence of Recombination on Human Genetic Diversity , 2006, PLoS genetics.
[46] L. Hurst,et al. The evolution of isochores: evidence from SNP frequency distributions. , 2002, Genetics.
[47] D. Haussler,et al. Biased clustered substitutions in the human genome: the footprints of male-driven biased gene conversion. , 2007, Genome research.
[48] E. Birney,et al. Enredo and Pecan: genome-wide mammalian consistency-based multiple alignment with paralogs. , 2008, Genome research.
[49] Daniel J. Wilson,et al. Broad-Scale Recombination Patterns Underlying Proper Disjunction in Humans , 2009, PLoS genetics.
[50] Life Technologies,et al. A map of human genome variation from population-scale sequencing , 2011 .
[51] P. Donnelly,et al. Drive Against Hotspot Motifs in Primates Implicates the PRDM9 Gene in Meiotic Recombination , 2010, Science.
[52] L. Duret,et al. Vanishing GC-rich isochores in mammalian genomes. , 2002, Genetics.
[53] L. Hurst,et al. Can mutation or fixation biases explain the allele frequency distribution of human single nucleotide polymorphisms (SNPs)? , 2002, Gene.
[54] Laurent Duret,et al. Detecting positive selection within genomes: the problem of biased gene conversion , 2010, Philosophical Transactions of the Royal Society B: Biological Sciences.
[55] Linda Odenthal-Hesse,et al. PRDM9 variation strongly influences recombination hot-spot activity and meiotic instability in humans , 2010, Nature Genetics.
[56] K. Paigen,et al. Prdm9 Controls Activation of Mammalian Recombination Hotspots , 2010, Science.
[57] A. Gylfason,et al. Fine-scale recombination rate differences between sexes, populations and individuals , 2010, Nature.
[58] B. Shafer,et al. DNA synthesis errors associated with double-strand-break repair. , 1995, Genetics.
[59] Laurent Duret,et al. Biased gene conversion and the evolution of mammalian genomic landscapes. , 2009, Annual review of genomics and human genetics.
[60] G. Coop,et al. PRDM9 Is a Major Determinant of Meiotic Recombination Hotspots in Humans and Mice , 2010, Science.
[61] G. Coop,et al. High-Resolution Mapping of Crossovers Reveals Extensive Variation in Fine-Scale Recombination Patterns Among Humans , 2008, Science.
[62] A. Eyre-Walker,et al. Evidence of selection on silent site base composition in mammals: potential implications for the evolution of isochores and junk DNA. , 1999, Genetics.