linkedISA: semantic representation of ISA-Tab experimental metadata
暂无分享,去创建一个
[1] Jie Zheng,et al. Modeling a microbial community and biodiversity assay with OBO Foundry ontologies: the interoperability gains of a modular approach , 2015, Database J. Biol. Databases Curation.
[2] Deborah L. McGuinness,et al. PROV-O: The PROV Ontology , 2013 .
[3] Susanna-Assunta Sansone,et al. Bio-GraphIIn: a graph-based, integrative and semantically-enabled repository for life science experimental data , 2013 .
[4] Nigel W. Hardy,et al. Promoting coherent minimum reporting guidelines for biological and biomedical investigations: the MIBBI project , 2008, Nature Biotechnology.
[5] Christoph Steinbeck,et al. MetaboLights—an open-access general-purpose repository for metabolomics studies and associated meta-data , 2012, Nucleic Acids Res..
[6] Jeff Z. Pan,et al. Resource Description Framework , 2020, Definitions.
[7] M. Ashburner,et al. The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration , 2007, Nature Biotechnology.
[8] Oliver Hofmann,et al. ISA software suite: supporting standards-compliant experimental annotation and enabling curation at the community level , 2010, Bioinform..
[9] Aedín C. Culhane,et al. Gene Expression Atlas update—a value-added database of microarray and sequencing-based functional genomics experiments , 2011, Nucleic Acids Res..
[10] Núria Queralt-Rosinach,et al. The Semanticscience Integrated Ontology (SIO) for biomedical research and knowledge discovery , 2014, J. Biomed. Semant..
[11] Oliver Hofmann,et al. The Stem Cell Discovery Engine: an integrated repository and analysis system for cancer stem cell comparisons , 2011, Nucleic Acids Res..
[12] Bladimir Díaz Borges. Berlin Declaration on Open Access to Knowledge in the Sciences and Humanities , 2008 .
[13] Christoph Steinbeck,et al. The MetaboLights repository: curation challenges in metabolomics , 2013, Database J. Biol. Databases Curation.
[14] Franz Baader. Description Logics , 2009, Reasoning Web.
[15] Gregory D. Schuler,et al. Database resources of the National Center for Biotechnology Information: update , 2004, Nucleic acids research.
[16] Paul T. Spellman,et al. A simple spreadsheet-based, MIAME-supportive format for microarray data: MAGE-TAB , 2006, BMC Bioinformatics.
[17] Patricia L. Whetzel,et al. OntoMaton: a Bioportal powered ontology widget for Google Spreadsheets , 2012, Bioinform..
[18] Richard Van Noorden. Data-sharing: Everything on display , 2013, Nature.
[19] Emilio Benfenati,et al. The ToxBank Data Warehouse: Supporting the Replacement of In Vivo Repeated Dose Systemic Toxicity Testing , 2013, Molecular informatics.
[20] Miguel Pignatelli,et al. Database: The Journal of Biological Databases and Curation , 2016 .
[21] Deborah L. McGuinness,et al. Explorations into the Provenance of High Throughput Biomedical Experiments , 2010, IPAW.
[22] Jessica A. Turner,et al. Modeling biomedical experimental processes with OBI , 2010, J. Biomed. Semant..
[23] Sean Bechhofer,et al. The OWL API: A Java API for OWL ontologies , 2011, Semantic Web.
[24] Xiaoshu Wang,et al. From XML to RDF: how semantic web technologies will change the design of 'omic' standards , 2005, Nature Biotechnology.
[25] Deborah L. McGuinness,et al. OWL Web ontology language overview , 2004 .
[26] Steffen Neumann,et al. The Risa R/Bioconductor package: integrative data analysis from experimental metadata and back again , 2014, BMC Bioinformatics.
[27] Susanna-Assunta Sansone,et al. Modeling a Microbial Community and Biodiversity Assay with OBI and PCO OBO Foundry Ontologies: the Interoperability Gains of a Modular Approach , 2014, ICBO.
[28] Nigel W. Hardy,et al. Meeting Report from the Second “Minimum Information for Biological and Biomedical Investigations” (MIBBI) workshop , 2010, Standards in genomic sciences.
[29] M. Scott Marshall,et al. Translating standards into practice - One Semantic Web API for Gene Expression , 2012, J. Biomed. Informatics.
[30] Steffen Staab,et al. International Handbooks on Information Systems , 2013 .
[31] Sean R. Davis,et al. NCBI GEO: archive for functional genomics data sets—update , 2012, Nucleic Acids Res..
[32] Maria Keays,et al. ArrayExpress update—trends in database growth and links to data analysis tools , 2012, Nucleic Acids Res..
[33] Michel Dumontier,et al. Ontology-Based Querying with Bio2RDF’s Linked Open Data , 2013, Journal of Biomedical Semantics.
[34] M. S. Avila-Garcia,et al. From peer-reviewed to peer-reproduced: a role for data standards, models and computational workflows in scholarly publishing , 2014, bioRxiv.
[35] Anne E. Trefethen,et al. Toward interoperable bioscience data , 2012, Nature Genetics.
[36] Luis Martín,et al. RDFBuilder: A tool to automatically build RDF-based interfaces for MAGE-OM microarray data sources , 2013, Comput. Methods Programs Biomed..