Classification of Autism Spectrum Disorder Using Random Support Vector Machine Cluster

Autism spectrum disorder (ASD) is mainly reflected in the communication and language barriers, difficulties in social communication, and it is a kind of neurological developmental disorder. Most researches have used the machine learning method to classify patients and normal controls, among which support vector machines (SVM) are widely employed. But the classification accuracy of SVM is usually low, due to the usage of a single SVM as classifier. Thus, we used multiple SVMs to classify ASD patients and typical controls (TC). Resting-state functional magnetic resonance imaging (fMRI) data of 46 TC and 61 ASD patients were obtained from the Autism Brain Imaging Data Exchange (ABIDE) database. Only 84 of 107 subjects are utilized in experiments because the translation or rotation of 7 TC and 16 ASD patients has surpassed ±2 mm or ±2°. Then the random SVM cluster was proposed to distinguish TC and ASD. The results show that this method has an excellent classification performance based on all the features. Furthermore, the accuracy based on the optimal feature set could reach to 96.15%. Abnormal brain regions could also be found, such as inferior frontal gyrus (IFG) (orbital and opercula part), hippocampus, and precuneus. It is indicated that the method of random SVM cluster may apply to the auxiliary diagnosis of ASD.

[1]  A. Babajani-Feremi,et al.  Application of advanced machine learning methods on resting-state fMRI network for identification of mild cognitive impairment and Alzheimer’s disease , 2015, Brain Imaging and Behavior.

[2]  Charles J. Lynch,et al.  Insula response and connectivity during social and non-social attention in children with autism. , 2016, Social cognitive and affective neuroscience.

[3]  Lucina Q. Uddin,et al.  Multivariate Searchlight Classification of Structural Magnetic Resonance Imaging in Children and Adolescents with Autism , 2011, Biological Psychiatry.

[4]  D. Amaral,et al.  Neuroanatomy of autism , 2008, Trends in Neurosciences.

[5]  Daoliang Li,et al.  Original paper: Classification of foreign fibers in cotton lint using machine vision and multi-class support vector machine , 2010 .

[6]  Emily L. Dennis,et al.  Functional Brain Connectivity Using fMRI in Aging and Alzheimer’s Disease , 2014, Neuropsychology Review.

[7]  Hua Ai,et al.  Activation of γ-aminobutyric Acid (A) Receptor Protects Hippocampus from Intense Exercise-induced Synapses Damage and Apoptosis in Rats , 2015, Chinese medical journal.

[8]  Mirella Dapretto,et al.  Frontal contributions to face processing differences in autism: Evidence from fMRI of inverted face processing , 2008, Journal of the International Neuropsychological Society.

[9]  M. Boly,et al.  Default network connectivity reflects the level of consciousness in non-communicative brain-damaged patients. , 2010, Brain : a journal of neurology.

[10]  Yvonne Höller,et al.  Deactivation of the Default Mode Network as a Marker of Impaired Consciousness: An fMRI Study , 2011, PloS one.

[11]  R. Brereton,et al.  Support vector machines for classification and regression. , 2010, The Analyst.

[12]  Richard Levy,et al.  Cognitive control and brain resources in major depression: An fMRI study using the n-back task , 2005, NeuroImage.

[13]  Christian Degueldre,et al.  Functional Neuroanatomy of Human Slow Wave Sleep , 1997, The Journal of Neuroscience.

[14]  John Suckling,et al.  A Longitudinal Functional Magnetic Resonance Imaging Study of Verbal Working Memory in Depression After Antidepressant Therapy , 2007, Biological Psychiatry.

[15]  Mark Laubach,et al.  Mistakes were made: Neural mechanisms for the adaptive control of action initiation by the medial prefrontal cortex , 2015, Journal of Physiology-Paris.

[16]  Aysenil Belger,et al.  Social stimuli interfere with cognitive control in autism , 2007, NeuroImage.

[17]  B. Pfleiderer,et al.  Multivariate Classification of Blood Oxygen Level–Dependent fMRI Data with Diagnostic Intention: A Clinical Perspective , 2014, American Journal of Neuroradiology.

[18]  J Kindler,et al.  Adjunctive selective estrogen receptor modulator increases neural activity in the hippocampus and inferior frontal gyrus during emotional face recognition in schizophrenia , 2016, Translational psychiatry.

[19]  Geoffrey Bird,et al.  Levels of emotional awareness and autism: An fMRI study , 2008, Social neuroscience.

[20]  Swann Pichon,et al.  Classification of autistic individuals and controls using cross-task characterization of fMRI activity , 2015, NeuroImage: Clinical.

[21]  Christine Ecker,et al.  Neuroimaging in autism spectrum disorder: brain structure and function across the lifespan , 2015, The Lancet Neurology.

[22]  Clifford R. Jack,et al.  Diagnostic neuroimaging across diseases , 2011, NeuroImage.

[23]  Uk-Su Choi,et al.  Abnormal Activation of the Social Brain Network in Children with Autism Spectrum Disorder: An fMRI Study , 2014, Psychiatry investigation.

[24]  S. Chua,et al.  Can Asperger syndrome be distinguished from autism? An anatomic likelihood meta-analysis of MRI studies. , 2011, Journal of psychiatry & neuroscience : JPN.

[25]  G. Fink,et al.  Dysfunctions in brain networks supporting empathy: An fMRI study in adults with autism spectrum disorders , 2010, Social neuroscience.

[26]  H. Sackeim,et al.  Parietal cortex and representation of the mental Self. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[27]  Thomas Fangmeier,et al.  Increased hippocampal volumes in adults with high functioning autism spectrum disorder and an IQ>100: A manual morphometric study , 2015, Psychiatry Research: Neuroimaging.

[28]  Marco K. Wittmann,et al.  Multiple signals in anterior cingulate cortex , 2016, Current Opinion in Neurobiology.

[29]  E. Macaluso,et al.  Neural correlates of the spatial and expectancy components of endogenous and stimulus-driven orienting of attention in the Posner task. , 2010, Cerebral cortex.

[30]  Abbas Babajani-Feremi,et al.  Identifying patients with Alzheimer’s disease using resting-state fMRI and graph theory , 2015, Clinical Neurophysiology.

[31]  Zaixu Cui,et al.  Parallel workflow tools to facilitate human brain MRI post-processing , 2015, Front. Neurosci..

[32]  J. Grèzes,et al.  A failure to grasp the affective meaning of actions in autism spectrum disorder subjects , 2009, Neuropsychologia.

[33]  Margot J. Taylor,et al.  The Effect of Diagnosis, Age, and Symptom Severity on Cortical Surface Area in the Cingulate Cortex and Insula in Autism Spectrum Disorders , 2013, Journal of child neurology.

[34]  Samuel M. McClure,et al.  Hierarchical control over effortful behavior by rodent medial frontal cortex: A computational model. , 2015, Psychological review.

[35]  S. Lawrie,et al.  A systematic review and meta-analysis of the fMRI investigation of autism spectrum disorders , 2012, Neuroscience & Biobehavioral Reviews.

[36]  Klaus P. Ebmeier,et al.  Multi-centre diagnostic classification of individual structural neuroimaging scans from patients with major depressive disorder. , 2012, Brain : a journal of neurology.

[37]  Volkmar Glauche,et al.  The Dual-Loop Model and the Human Mirror Neuron System: an Exploratory Combined fMRI and DTI Study of the Inferior Frontal Gyrus. , 2016, Cerebral cortex.

[38]  M. Corbetta,et al.  Interaction of Stimulus-Driven Reorienting and Expectation in Ventral and Dorsal Frontoparietal and Basal Ganglia-Cortical Networks , 2009, The Journal of Neuroscience.

[39]  Monica Luciana,et al.  Neural networks involved in adolescent reward processing: An activation likelihood estimation meta-analysis of functional neuroimaging studies , 2015, NeuroImage.

[40]  Simone Kühn,et al.  'Put on your poker face': neural systems supporting the anticipation for expressive suppression and cognitive reappraisal. , 2013, Social cognitive and affective neuroscience.

[41]  Issidoros C. Sarinopoulos,et al.  The effect of anticipation and the specificity of sex differences for amygdala and hippocampus function in emotional memory , 2006, Proceedings of the National Academy of Sciences.

[42]  A. Cavanna,et al.  The precuneus: a review of its functional anatomy and behavioural correlates. , 2006, Brain : a journal of neurology.

[43]  Huafu Chen,et al.  Multivariate classification of autism spectrum disorder using frequency-specific resting-state functional connectivity—A multi-center study , 2016, Progress in Neuro-psychopharmacology and Biological Psychiatry.

[44]  M. Just,et al.  From the Selectedworks of Marcel Adam Just Inhibitory Control in High Functioning Autism: Decreased Activation and Underconnectivity in Inhibition Networks Inhibitory Control in High-functioning Autism: Decreased Activation and Underconnectivity in Inhibition Networks , 2022 .

[45]  C. Lajonchere,et al.  Genetic heritability and shared environmental factors among twin pairs with autism. , 2011, Archives of general psychiatry.

[46]  Joy Hirsch,et al.  Brief Report: Anomalous Neural Deactivations and Functional Connectivity During Receptive Language in Autism Spectrum Disorder: A Functional MRI Study , 2014, Journal of autism and developmental disorders.

[47]  Alan C. Evans,et al.  Cortical Thickness Abnormalities in Autism Spectrum Disorders Through Late Childhood, Adolescence, and Adulthood: A Large‐Scale MRI Study , 2017, Cerebral cortex.

[48]  Yuru Zhong,et al.  Limbic dysregulation is associated with lowered heart rate variability and increased trait anxiety in healthy adults , 2009, Human brain mapping.

[49]  N. Tzourio-Mazoyer,et al.  Automated Anatomical Labeling of Activations in SPM Using a Macroscopic Anatomical Parcellation of the MNI MRI Single-Subject Brain , 2002, NeuroImage.

[50]  Franziska R. Richter,et al.  Reduced Hippocampal Functional Connectivity During Episodic Memory Retrieval in Autism , 2017, Cerebral cortex.

[51]  A. Young,et al.  Deficits in facial, body movement and vocal emotional processing in autism spectrum disorders , 2010, Psychological Medicine.

[52]  Michele Tansella,et al.  Neural bases of atypical emotional face processing in autism: A meta-analysis of fMRI studies , 2015, The world journal of biological psychiatry : the official journal of the World Federation of Societies of Biological Psychiatry.

[53]  F. Happé,et al.  Meta-analysis of gray matter abnormalities in autism spectrum disorder: should Asperger disorder be subsumed under a broader umbrella of autistic spectrum disorder? , 2011, Archives of general psychiatry.

[54]  Alex Martin,et al.  Functional connectivity classification of autism identifies highly predictive brain features but falls short of biomarker standards , 2014, NeuroImage: Clinical.

[55]  M. Delgado-Rodríguez,et al.  Systematic review and meta-analysis. , 2017, Medicina intensiva.

[56]  N. Minshew,et al.  Neocortical system abnormalities in autism: An fMRI study of spatial working memory , 2002, Neurology.

[57]  Ralph-Axel Müller,et al.  Diagnostic classification of intrinsic functional connectivity highlights somatosensory, default mode, and visual regions in autism , 2015, NeuroImage: Clinical.

[58]  Michael S. Gaffrey,et al.  A typical participation of visual cortex during word processing in autism: An fMRI study of semantic decision , 2007, Neuropsychologia.

[59]  J. Mailo,et al.  Insight into the precuneus: a novel seizure semiology in a child with epilepsy arising from the right posterior precuneus. , 2015, Epileptic disorders : international epilepsy journal with videotape.

[60]  Patrik Vuilleumier,et al.  Fear and stop: A role for the amygdala in motor inhibition by emotional signals , 2011, NeuroImage.

[61]  Massimo Silvetti,et al.  Adaptive effort investment in cognitive and physical tasks: a neurocomputational model , 2015, Front. Behav. Neurosci..

[62]  Jared A. Nielsen,et al.  Functional connectivity magnetic resonance imaging classification of autism. , 2011, Brain : a journal of neurology.

[63]  Daniel P. Kennedy,et al.  The Autism Brain Imaging Data Exchange: Towards Large-Scale Evaluation of the Intrinsic Brain Architecture in Autism , 2013, Molecular Psychiatry.

[64]  R. Buckner,et al.  Functional-Anatomic Fractionation of the Brain's Default Network , 2010, Neuron.

[65]  S. Lawrie,et al.  Towards a neuroanatomy of autism: A systematic review and meta-analysis of structural magnetic resonance imaging studies , 2008, European Psychiatry.

[66]  E. Bullmore,et al.  Differential activation of the amygdala and the ‘social brain’ during fearful face-processing in Asperger Syndrome , 2007, Neuropsychologia.

[67]  Andrew J. Saykin,et al.  Functional neuroanatomical correlates of episodic memory impairment in early phase psychosis , 2015, Brain Imaging and Behavior.

[68]  Yudong Zhang,et al.  Detection of subjects and brain regions related to Alzheimer's disease using 3D MRI scans based on eigenbrain and machine learning , 2015, Front. Comput. Neurosci..

[69]  J. Pillai Functional Connectivity. , 2017, Neuroimaging clinics of North America.

[70]  Hidenao Fukuyama,et al.  Functional relevance of the precuneus in verbal politeness , 2015, Neuroscience Research.

[71]  Piernicola Oliva,et al.  Gray Matter Alterations in Young Children with Autism Spectrum Disorders: Comparing Morphometry at the Voxel and Regional Level , 2015, Journal of neuroimaging : official journal of the American Society of Neuroimaging.

[72]  Jennifer A. Silvers,et al.  Functional imaging studies of emotion regulation: a synthetic review and evolving model of the cognitive control of emotion , 2012, Annals of the New York Academy of Sciences.

[73]  Ralph-Axel Müller,et al.  Under-reactive but easily distracted: An fMRI investigation of attentional capture in autism spectrum disorder , 2015, Developmental Cognitive Neuroscience.

[74]  Jie Zhang,et al.  Functional connectivity decreases in autism in emotion, self, and face circuits identified by Knowledge-based Enrichment Analysis , 2017, NeuroImage.

[75]  Yudong Zhang,et al.  Classification of Fruits Using Computer Vision and a Multiclass Support Vector Machine , 2012, Sensors.

[76]  L. Pessoa How do emotion and motivation direct executive control? , 2009, Trends in Cognitive Sciences.

[77]  D. Shen,et al.  Identification of infants at high‐risk for autism spectrum disorder using multiparameter multiscale white matter connectivity networks , 2015, Human brain mapping.

[78]  A. Mechelli,et al.  Using Support Vector Machine to identify imaging biomarkers of neurological and psychiatric disease: A critical review , 2012, Neuroscience & Biobehavioral Reviews.