Early Imaging-Based Predictive Modeling of Cognitive Performance Following Therapy for Childhood ALL

In the United States, Acute Lymphoblastic Leukemia (ALL), the most common child and adolescent malignancy, accounts for roughly 25% of childhood cancers diagnosed annually with a 5-year survival rate as high as 94%. This improved survival rate comes with an increased risk for delayed neurocognitive effects in attention, working memory, and processing speed. Predictive modeling and characterization of neurocognitive effects are critical to inform the family and also to identify patients for interventions targeting. Current state-of-the-art methods mainly use hypothesis-driven statistical testing methods to characterize and model such cognitive events. While these techniques have proven to be useful in understanding cognitive abilities, they are inadequate in explaining causal relationships, as well as individuality and variations. In this study, we developed multivariate data-driven models to measure the late neurocognitive effects of ALL patients using behavioral phenotypes, Diffusion Tensor Magnetic Resonance Imaging (DTI) based tractography data, morphometry statistics, tractography measures, behavioral, and demographic variables. Alongside conventional machine learning and graph mining, we adopted “Stability Selection” to select the most relevant features and choose models that are consistent over a range of parameters. The proposed approach demonstrated substantially improved accuracy (13% – 26%) over existing models and also yielded relevant features that were verified by domain experts.

[1]  Cheng Cheng,et al.  Genetic mediators of neurocognitive outcomes in survivors of childhood acute lymphoblastic leukemia. , 2013, Journal of clinical oncology : official journal of the American Society of Clinical Oncology.

[2]  Deo Kumar Srivastava,et al.  Diffusion tensor imaging and neurocognition in survivors of childhood acute lymphoblastic leukaemia. , 2014, Brain : a journal of neurology.

[3]  Rajen Dinesh Shah,et al.  Variable selection with error control: another look at stability selection , 2011, 1105.5578.

[4]  Duncan J. Watts,et al.  Collective dynamics of ‘small-world’ networks , 1998, Nature.

[5]  P. Bühlmann,et al.  Analyzing Bagging , 2001 .

[6]  Günther Deuschl,et al.  CA1 neurons in the human hippocampus are critical for autobiographical memory, mental time travel, and autonoetic consciousness , 2011, Proceedings of the National Academy of Sciences.

[7]  R. Theilmann,et al.  Reduced Frontal White Matter Volume in Long-Term Childhood Leukemia Survivors: A Voxel-Based Morphometry Study , 2008, American Journal of Neuroradiology.

[8]  Shelli R Kesler,et al.  Atypical Structural Connectome Organization and Cognitive Impairment in Young Survivors of Acute Lymphoblastic Leukemia , 2016, Brain Connect..

[9]  Nikos Makris,et al.  Automatically parcellating the human cerebral cortex. , 2004, Cerebral cortex.

[10]  Boleslaw K. Szymanski,et al.  Community Detection via Maximization of Modularity and Its Variants , 2014, IEEE Transactions on Computational Social Systems.

[11]  Michael Noseworthy,et al.  White matter growth as a mechanism of cognitive development in children , 2006, NeuroImage.

[12]  J. Fardell,et al.  Neurobiological basis of chemotherapy-induced cognitive impairment: A review of rodent research , 2011, Neuroscience & Biobehavioral Reviews.

[13]  Cheng Cheng,et al.  Treating childhood acute lymphoblastic leukemia without cranial irradiation. , 2009, The New England journal of medicine.

[14]  David A. Freedman,et al.  A Remark on the Difference between Sampling with and without Replacement , 1977 .

[15]  N. Meinshausen,et al.  Stability selection , 2008, 0809.2932.

[16]  Mohammed Yeasin,et al.  Decoding of single-trial EEG reveals unique states of functional brain connectivity that drive rapid speech categorization decisions. , 2019, Journal of neural engineering.

[17]  M. Noseworthy,et al.  Diffusion tensor imaging of white matter after cranial radiation in children for medulloblastoma: correlation with IQ. , 2006, Neuro-oncology.

[18]  Peng Zhao,et al.  On Model Selection Consistency of Lasso , 2006, J. Mach. Learn. Res..

[19]  L. Breiman USING ADAPTIVE BAGGING TO DEBIAS REGRESSIONS , 1999 .

[20]  Xianjing Fang,et al.  Abnormal topological organization in white matter structural networks in survivors of acute lymphoblastic leukaemia with chemotherapy treatment , 2017, Oncotarget.

[21]  Albert Y. Zomaya,et al.  Assortative mixing in directed biological networks , 2012, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

[22]  Christine Preibisch,et al.  Voxel-based morphometry and diffusion-tensor MR imaging of the brain in long-term survivors of childhood leukemia , 2008, European Radiology.

[23]  Olaf Sporns,et al.  Network structure of cerebral cortex shapes functional connectivity on multiple time scales , 2007, Proceedings of the National Academy of Sciences.

[24]  Joanne Rovet,et al.  The relations between white matter and declarative memory in older children and adolescents , 2009, Brain Research.

[25]  Danielle Smith Bassett,et al.  Small-World Brain Networks , 2006, The Neuroscientist : a review journal bringing neurobiology, neurology and psychiatry.

[26]  Alexander Leemans,et al.  Changes in Brain Structural Networks and Cognitive Functions in Testicular Cancer Patients Receiving Cisplatin-Based Chemotherapy , 2017, Journal of the National Cancer Institute.

[27]  Mohammed Yeasin,et al.  Selection of stable features for modeling 4-D affective space from EEG recording , 2017, 2017 International Joint Conference on Neural Networks (IJCNN).

[28]  Mark W. Woolrich,et al.  Probabilistic diffusion tractography with multiple fibre orientations: What can we gain? , 2007, NeuroImage.

[29]  Michelle Monje,et al.  Cognitive side effects of cancer therapy demonstrate a functional role for adult neurogenesis , 2012, Behavioural Brain Research.

[30]  Mark E. J. Newman,et al.  The Structure and Function of Complex Networks , 2003, SIAM Rev..

[31]  F. Agakov,et al.  Application of high-dimensional feature selection: evaluation for genomic prediction in man , 2015, Scientific Reports.

[32]  T. Kemper,et al.  Hippocampus in autism: a Golgi analysis , 1995, Acta Neuropathologica.

[33]  G. Edelman,et al.  A measure for brain complexity: relating functional segregation and integration in the nervous system. , 1994, Proceedings of the National Academy of Sciences of the United States of America.

[34]  Mohammed Yeasin,et al.  Decoding of single-trial EEG reveals unique states of functional brain connectivity that drive rapid speech categorization decisions , 2019, Journal of neural engineering.

[35]  H A Simon,et al.  How Big Is a Chunk? , 1974, Science.

[36]  Al-Fahad Rakib,et al.  Robust Modeling of Continuous 4-D Affective Space from EEG Recording , 2016 .

[37]  Nicholas J. Rose,et al.  Linear Algebra and Its Applications (Gilbert Strang) , 1982 .

[38]  E. Stein,et al.  Cingulate activation increases dynamically with response speed under stimulus unpredictability. , 2007, Cerebral cortex.

[39]  Aron K Barbey,et al.  Orbitofrontal contributions to human working memory. , 2011, Cerebral cortex.

[40]  G L Shulman,et al.  INAUGURAL ARTICLE by a Recently Elected Academy Member:A default mode of brain function , 2001 .

[41]  H. Eichenbaum Hippocampus Cognitive Processes and Neural Representations that Underlie Declarative Memory , 2004, Neuron.

[42]  Olaf Sporns,et al.  Complex network measures of brain connectivity: Uses and interpretations , 2010, NeuroImage.

[43]  Geoffrey E. Hinton,et al.  Visualizing Data using t-SNE , 2008 .

[44]  Turan Paksoy,et al.  A genetic algorithm approach for multi-objective optimization of supply chain networks , 2006, Comput. Ind. Eng..

[45]  R. Tibshirani,et al.  Least angle regression , 2004, math/0406456.

[46]  B. Staresina,et al.  Mind the Gap: Binding Experiences across Space and Time in the Human Hippocampus , 2009, Neuron.