Global analysis of mRNA decay and abundance in Escherichia coli at single-gene resolution using two-color fluorescent DNA microarrays
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Arkady B. Khodursky | Stanley N Cohen | Stanley N. Cohen | A. Khodursky | J. Bernstein | Pei-Hsun Lin | S. Lin-Chao | Sue Lin-Chao | Jonathan A. Bernstein | Pei-Hsun Lin | Lin-Chao Sue
[1] J. Belasco,et al. Growth-rate dependent regulation of mRNA stability in Escherichia coli , 1984, Nature.
[2] J. Ross,et al. Control of messenger RNA stability in higher eukaryotes. , 1996, Trends in genetics : TIG.
[3] R. Rauhut,et al. mRNA degradation in bacteria. , 1999, FEMS microbiology reviews.
[4] R. Ehrlich,et al. Synonymous codon selection controls in vivo turnover and amount of mRNA in Escherichia coli bla and ompA genes , 1996, Journal of bacteriology.
[5] M. Dreyfus,et al. In the absence of translation, RNase E can bypass 5' mRNA stabilizers in Escherichia coli. , 1998, Journal of molecular biology.
[6] M. Borodovsky,et al. GeneMark.hmm: new solutions for gene finding. , 1998, Nucleic acids research.
[7] H. Bremer,et al. Effect of the bacterial growth rate on replication control of plasmid pBR322 in Escherichia coli , 1986, Molecular and General Genetics MGG.
[8] A. J. Carpousis,et al. mRNA degradation. A tale of poly(A) and multiprotein machines. , 1999, Trends in genetics : TIG.
[9] Stanley N Cohen,et al. The stability of E. coli gene transcripts is dependent on determinants localized to specific mRNA segments , 1986, Cell.
[10] G. Mackie,et al. Degradation of mRNA in Escherichia coli: an old problem with some new twists. , 1999, Progress in nucleic acid research and molecular biology.
[11] K. Zahn,et al. Overexpression of an mRNA dependent on rare codons inhibits protein synthesis and cell growth , 1996, Journal of bacteriology.
[12] Lukas C. Kühn,et al. A stem-loop in the 3′ untranslated region mediates iron-dependent regulation of transferrin receptor mRNA stability in the cytoplasm , 1988, Cell.
[13] S. Normark,et al. Processed mRNA with differential stability in the regulation of E. coli pilin gene expression , 1988, Cell.
[14] H. Sambrook. Molecular cloning : a laboratory manual. Cold Spring Harbor, NY , 1989 .
[15] S Rozen,et al. Primer3 on the WWW for general users and for biologist programmers. , 2000, Methods in molecular biology.
[16] H. Krisch,et al. RNase E processing of essential cell division genes mRNA in Escherichia coli. , 1996, Nucleic acids research.
[17] C. Arraiano,et al. PNPase modulates RNase II expression in Escherichia coli: implications for mRNA decay and cell metabolism , 1996, Molecular microbiology.
[18] J. Kuhn,et al. Synthesis and degradation of lac mRNA in E. coli depleted of 30S ribosomal subunits , 1979, Molecular and General Genetics MGG.
[19] M Grunberg-Manago,et al. Messenger RNA stability and its role in control of gene expression in bacteria and phages. , 1999, Annual review of genetics.
[20] D. Botstein,et al. DNA microarray analysis of gene expression in response to physiological and genetic changes that affect tryptophan metabolism in Escherichia coli. , 2000, Proceedings of the National Academy of Sciences of the United States of America.
[21] S. Cohen,et al. Effects of nucleotide sequence on the specificity of rne-dependent and RNase E-mediated cleavages of RNA I encoded by the pBR322 plasmid. , 1994, The Journal of biological chemistry.
[22] Frederick R. Blattner,et al. High-Density Microarray-Mediated Gene Expression Profiling of Escherichia coli , 2001, Journal of bacteriology.
[23] D. Georgellis,et al. Decay of ompA mRNA and processing of 9S RNA are immediately affected by shifts in growth rate, but in opposite manners , 1992, Journal of bacteriology.
[24] J L Schottel,et al. A novel transcriptional response by the cat gene during slow growth of Escherichia coli , 1991, Journal of bacteriology.
[25] D. Botstein,et al. The transcriptional program in the response of human fibroblasts to serum. , 1999, Science.
[26] E. Wisman,et al. New Molecular Phenotypes in the dst Mutants of Arabidopsis Revealed by DNA Microarray Analysis Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.010295. , 2001, The Plant Cell Online.
[27] Ronald W. Davis,et al. Quantitative Monitoring of Gene Expression Patterns with a Complementary DNA Microarray , 1995, Science.
[28] J. Sambrook,et al. Molecular Cloning: A Laboratory Manual , 2001 .
[29] J. Andersen,et al. Host factor I, Hfq, binds to Escherichia coli ompA mRNA in a growth rate-dependent fashion and regulates its stability. , 1998, Proceedings of the National Academy of Sciences of the United States of America.
[30] S. Cohen,et al. A+U content rather than a particular nucleotide order determines the specificity of RNase E cleavage. , 1994, The Journal of biological chemistry.
[31] S. Cohen,et al. Global analysis of growth phase responsive gene expression and regulation of antibiotic biosynthetic pathways in Streptomyces coelicolor using DNA microarrays. , 2001, Genes & development.
[32] P. Régnier,et al. Ribosomes inhibit an RNase E cleavage which induces the decay of the rpsO mRNA of Escherichia coli , 1998, The EMBO journal.
[33] J. Sabina,et al. Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure. , 1999, Journal of molecular biology.
[34] J. Yu,et al. mRNA stabilization by the ompA 5' untranslated region: two protective elements hinder distinct pathways for mRNA degradation. , 1998, RNA.
[35] Kangseok Lee,et al. RNase G complementation of rne null mutation identifies functional interrelationships with RNase E in Escherichia coli , 2002, Molecular microbiology.
[36] S. Salzberg,et al. Prediction of transcription terminators in bacterial genomes. , 2000, Journal of molecular biology.
[37] Stanley N Cohen,et al. Site-specific RNase E cleavage of oligonucleotides and inhibition by stem–loops , 1995, Nature.
[38] Stanley N Cohen,et al. The rate of processing and degradation of antisense RNAI regulates the replication of ColE1-type plasmids in vivo , 1991, Cell.
[39] S. R. Kushner,et al. Polyadenylylation helps regulate mRNA decay in Escherichia coli. , 1995, Proceedings of the National Academy of Sciences of the United States of America.
[40] V. Kaberdin,et al. Enhanced cleavage of RNA mediated by an interaction between substrates and the arginine-rich domain of E. coli ribonuclease E. , 2000, Journal of molecular biology.
[41] R. Sauer,et al. Stop codons preceded by rare arginine codons are efficient determinants of SsrA tagging in Escherichia coli , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[42] Qi Liu,et al. Analysis of mRNA decay and rRNA processing in Escherichia coli in the absence of RNase E‐based degradosome assembly , 2000, Molecular microbiology.
[43] Roy Parker,et al. Degradation of mRNA in eukaryotes , 1995, Cell.
[44] L. Penland,et al. Use of a cDNA microarray to analyse gene expression patterns in human cancer , 1996, Nature Genetics.
[45] S. Pedersen. Escherichia coli ribosomes translate in vivo with variable rate. , 1984, The EMBO journal.
[46] N. W. Davis,et al. The complete genome sequence of Escherichia coli K-12. , 1997, Science.
[47] S. Dunn,et al. Degradation of Escherichia coli uncB mRNA by multiple endonucleolytic cleavages , 1995, Journal of bacteriology.
[48] John D. Storey,et al. Precision and functional specificity in mRNA decay , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[49] B. Meyer,et al. Isolation of a mRNA instability sequence that is cis-dominant to the ompA stability determinant in Escherichia coli. , 1996, Gene.
[50] J. Belasco,et al. An evolutionarily conserved RNA stem-loop functions as a sensor that directs feedback regulation of RNase E gene expression. , 2000, Genes & development.
[51] S. R. Kushner,et al. The Escherichia coli mrsC Gene Is Required for Cell Growth and mRNA Decay , 1998, Journal of bacteriology.
[52] D. Steege. Emerging features of mRNA decay in bacteria. , 2000, RNA.
[53] L. Isaksson,et al. Accumulation of a mRNA decay intermediate by ribosomal pausing at a stop codon. , 1996, Nucleic acids research.
[54] F. Neidhardt,et al. Culture Medium for Enterobacteria , 1974, Journal of bacteriology.
[55] P. Brown,et al. A DNA microarray system for analyzing complex DNA samples using two-color fluorescent probe hybridization. , 1996, Genome research.
[56] Michael Ruogu Zhang,et al. Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization. , 1998, Molecular biology of the cell.
[57] K. J. McDowall,et al. RNase E: still a wonderfully mysterious enzyme , 1997, Molecular microbiology.