Airborne hyperspectral data predict Ellenberg indicator values for nutrient and moisture availability in dry grazed grasslands within a local agricultural landscape

Species-based ecological indices, such as Ellenberg indicators, reflect plant habitat preferences and can be used to describe local environment conditions. One disadvantage of using vegetation data as a substitute for environmental data is the fact that extensive floristic sampling can usually only be carried out at a plot scale within limited geographical areas. Remotely sensed data have the potential to provide information on fine-scale vegetation properties over large areas. In the present study, we examine whether airborne hyperspectral remote sensing can be used to predict Ellenberg nutrient (N) and moisture (M) values in plots in dry grazed grasslands within a local agricultural landscape in southern Sweden. We compare the prediction accuracy of three categories of model: (I) models based on predefined vegetation indices (VIs), (II) models based on waveband-selected VIs, and (III) models based on the full set of hyperspectral wavebands. We also identify the optimal combination of wavebands for the prediction of Ellenberg values. The floristic composition of 104 (4 m × 4 m grassland) plots on the Baltic island of Oland was surveyed in the field, and the vascular plant species recorded in the plots were assigned Ellenberg indicator values for N and M. A community-weighted mean value was calculated for N (mN) and M (mM) within each plot. Hyperspectral data were extracted from an 8 m × 8 m pixel window centred on each plot. The relationship between field-observed and predicted mean Ellenberg values was significant for all three categories of prediction models. The performance of the category II and III models was comparable, and they gave lower prediction errors and higher R2 values than the category I models for both mN and mM. Visible and near-infrared wavebands were important for the prediction of both mN and mM, and shortwave infrared wavebands were also important for the prediction of mM. We conclude that airborne hyperspectral remote sensing can detect spectral differences in vegetation between grassland plots characterised by different mean Ellenberg N and M values, and that remote sensing technology can potentially be used to survey fine-scale variation in environmental conditions within a local agricultural landscape.

[1]  A. Huete,et al.  Overview of the radiometric and biophysical performance of the MODIS vegetation indices , 2002 .

[2]  R. Richter,et al.  Geo-atmospheric processing of airborne imaging spectrometry data. Part 2: Atmospheric/topographic correction , 2002 .

[3]  C. Jun,et al.  Performance of some variable selection methods when multicollinearity is present , 2005 .

[4]  D. Cox,et al.  An Analysis of Transformations , 1964 .

[5]  Clement Atzberger,et al.  LAI and chlorophyll estimation for a heterogeneous grassland using hyperspectral measurements , 2008 .

[6]  Jin Chen,et al.  Estimation of aboveground biomass using in situ hyperspectral measurements in five major grassland ecosystems on the Tibetan Plateau , 2008 .

[7]  Wolfgang Cramer,et al.  THE PLANT COMMUNITY AS A NICHE BIOASSAY: ENVIRONMENTAL CORRELATES OF LOCAL VARIATION IN GYPSOPHILA FASTIGIATA , 1990 .

[8]  Leon Bennun,et al.  Horizon scan of global conservation issues for 2011. , 2011, Trends in ecology & evolution.

[9]  A. Huete A soil-adjusted vegetation index (SAVI) , 1988 .

[10]  A. P. Schaffers,et al.  Reliability of Ellenberg indicator values for moisture, nitrogen and soil reaction: a comparison with field measurements , 2000 .

[11]  Steffen Boch,et al.  NIRS meets Ellenberg's indicator values: Prediction of moisture and nitrogen values of agricultural grassland vegetation by means of near-infrared spectral characteristics , 2012 .

[12]  Sandra Lavorel,et al.  A biodiversity monitoring framework for practical conservation of grasslands and shrublands , 2010 .

[13]  M. Hill,et al.  Extending Ellenberg's indicator values to a new area: an algorithmic approach , 2000 .

[14]  L. Carrascal,et al.  Partial least squares regression as an alternative to current regression methods used in ecology , 2009 .

[15]  Eric Garnier,et al.  PLANT FUNCTIONAL MARKERS CAPTURE ECOSYSTEM PROPERTIES DURING SECONDARY SUCCESSION , 2004 .

[16]  Thomas Möckel,et al.  Assessment of fine-scale plant species beta diversity using WorldView-2 satellite spectral dissimilarity , 2013, Ecol. Informatics.

[17]  G. Carter,et al.  Derivative Analysis of AVIRIS Data for Crop Stress Detection , 2005 .

[18]  John Shepanski,et al.  Hyperion, a space-based imaging spectrometer , 2003, IEEE Trans. Geosci. Remote. Sens..

[19]  Olivier Honnay,et al.  A trait‐based analysis of the role of phosphorus vs. nitrogen enrichment in plant species loss across North‐west European grasslands , 2011 .

[20]  Jin Chen,et al.  Estimating aboveground biomass of grassland having a high canopy cover: an exploratory analysis of in situ hyperspectral data , 2009 .

[21]  T. Reitalu,et al.  Determinants of fine-scale plant diversity in dry calcareous grasslands within the Baltic Sea region , 2014 .

[22]  K. Barry,et al.  Optimizing spectral indices and chemometric analysis of leaf chemical properties using radiative transfer modeling , 2011 .

[23]  P. Poschlod,et al.  Effects of grassland management on plant functional trait composition , 2008 .

[24]  L. Eklundh,et al.  A physically based vegetation index for improved monitoring of plant phenology , 2014 .

[25]  J. P. Grime,et al.  Ellenberg numbers revisited , 1993 .

[26]  J. Heiskanen Estimating aboveground tree biomass and leaf area index in a mountain birch forest using ASTER satellite data , 2006 .

[27]  David B. Lobell,et al.  Subpixel canopy cover estimation of coniferous forests in Oregon using SWIR imaging spectrometry , 2001 .

[28]  Olga Sykioti,et al.  Monitoring canopy biophysical and biochemical parameters in ecosystem scale using satellite hyperspectral imagery: An application on a Phlomis fruticosa Mediterranean ecosystem using multiangular CHRIS/PROBA observations , 2010 .

[29]  Markus Neteler,et al.  Remotely sensed spectral heterogeneity as a proxy of species diversity: Recent advances and open challenges , 2010, Ecol. Informatics.

[30]  A. K. Skidmore,et al.  Derivation of the red edge index using the MERIS standard band setting , 2002 .

[31]  S. Tarantola,et al.  Detecting vegetation leaf water content using reflectance in the optical domain , 2001 .

[32]  Barbara C. Schmid,et al.  Contrasting changes in taxonomic, phylogenetic and functional diversity during a long‐term succession: insights into assembly processes , 2013 .

[33]  J. Schellberg,et al.  Changes in vegetation types and Ellenberg indicator values after 65 years of fertilizer application in the Rengen Grassland Experiment, Germany. , 2009 .

[34]  J. Reynolds,et al.  Spatial heterogeneity in soil nutrient supply modulates nutrient and biomass responses to multiple global change drivers in model grassland communities , 2006 .

[35]  B Shipley,et al.  Is leaf dry matter content a better predictor of soil fertility than specific leaf area? , 2011, Annals of botany.

[36]  K. Soudani,et al.  Calibration and validation of hyperspectral indices for the estimation of broadleaved forest leaf chlorophyll content, leaf mass per area, leaf area index and leaf canopy biomass , 2008 .

[37]  John R. Miller,et al.  Hyperspectral vegetation indices and novel algorithms for predicting green LAI of crop canopies: Modeling and validation in the context of precision agriculture , 2004 .

[38]  S. Ustin,et al.  Estimating Vegetation Water content with Hyperspectral data for different Canopy scenarios: Relationships between AVIRIS and MODIS Indexes , 2006 .

[39]  P. Poschlod,et al.  Functional characterizations of Ellenberg indicator values – a review on ecophysiological determinants , 2016 .

[40]  P. Curran Remote sensing of foliar chemistry , 1989 .

[41]  G. Austrheim,et al.  How does continuity in grassland management after ploughing affect plant community patterns? , 1999, Plant Ecology.

[42]  Damiano Gianelle,et al.  On the relationship between ecosystem-scale hyperspectral reflectance and CO2 exchange in European mountain grasslands. , 2014 .

[43]  Yuhong He,et al.  Studying mixed grassland ecosystems I: suitable hyperspectral vegetation indices , 2006 .

[44]  Martin Evans,et al.  Empirical Modelling of Vegetation Abundance from Airborne Hyperspectral Data for Upland Peatland Restoration Monitoring , 2014, Remote. Sens..

[45]  M. Werger,et al.  Light partitioning among species and species replacement in early successional grasslands , 2002 .

[46]  D. Sims,et al.  Relationships between leaf pigment content and spectral reflectance across a wide range of species, leaf structures and developmental stages , 2002 .

[47]  G. Foody,et al.  Measuring and modelling biodiversity from space , 2008 .

[48]  O. Eriksson,et al.  Size and heterogeneity rather than landscape context determine plant species richness in semi‐natural grasslands , 2007 .

[49]  C. Daughtry,et al.  Plant Litter and Soil Reflectance , 2000 .

[50]  Ruprecht Düll,et al.  Zeigerwerte von Pflanzen in Mitteleuropa , 1992 .

[51]  S. Persson Ecological Indicator Values as an Aid in the Interpretation of Ordination Diagrams , 1981 .

[52]  P. Legendre,et al.  A distance-based framework for measuring functional diversity from multiple traits. , 2010, Ecology.

[53]  B. Turner,et al.  Estimating foliage nitrogen concentration from HYMAP data using continuum, removal analysis , 2004 .

[54]  Arnon Karnieli,et al.  Exploring remotely sensed technologies for monitoring wheat potassium and phosphorus using field spectroscopy , 2011 .

[55]  A. Skidmore,et al.  Narrow band vegetation indices overcome the saturation problem in biomass estimation , 2004 .

[56]  O. Eriksson,et al.  Land-use history and fragmentation of traditionally managed grasslands in Scandinavia , 2002 .

[57]  Does the Spectral Format Matter in Diffuse Reflection Spectroscopy? , 2009, Applied spectroscopy.

[58]  Prasad S. Thenkabail,et al.  Evaluation of Narrowband and Broadband Vegetation Indices for Determining Optimal Hyperspectral Wavebands for Agricultural Crop Characterization , 2002 .

[59]  R Core Team,et al.  R: A language and environment for statistical computing. , 2014 .

[60]  Elizabeth M. Middleton,et al.  Selection of Hyperspectral Narrowbands (HNBs) and Composition of Hyperspectral Twoband Vegetation Indices (HVIs) for Biophysical Characterization and Discrimination of Crop Types Using Field Reflectance and Hyperion/EO-1 Data , 2013, IEEE Journal of Selected Topics in Applied Earth Observations and Remote Sensing.

[61]  J. Huisman,et al.  Impact of a conversion from cropland to grassland on C and N storage and related soil properties: Analysis of a 60-year chronosequence , 2006 .

[62]  Irshad A. Mohammed,et al.  Advances in Hyperspectral Remote Sensing of Vegetation and Agricultural Crops , 2014, Fundamentals, Sensor Systems, Spectral Libraries, and Data Mining for Vegetation.

[63]  Sebastian Schmidtlein,et al.  Classification of Grassland Successional Stages Using Airborne Hyperspectral Imagery , 2014, Remote. Sens..

[64]  William D. Philpot,et al.  Yellowness index: An application of spectral second derivatives to estimate chlorosis of leaves in stressed vegetation , 1999 .

[65]  B. Gao NDWI—A normalized difference water index for remote sensing of vegetation liquid water from space , 1996 .

[66]  Andrew K. Skidmore,et al.  Estimation of green grass/herb biomass from airborne hyperspectral imagery using spectral indices and partial least squares regression , 2007, Int. J. Appl. Earth Obs. Geoinformation.

[67]  John R. Miller,et al.  Remote Estimation of Crop Chlorophyll Content Using Spectral Indices Derived From Hyperspectral Data , 2008, IEEE Transactions on Geoscience and Remote Sensing.

[68]  Honor C. Prentice,et al.  Semi-natural grassland continuity, long-term land-use change and plant species richness in an agricultural landscape on Öland, Sweden , 2008 .

[69]  Michael E. Schaepman,et al.  A review on reflective remote sensing and data assimilation techniques for enhanced agroecosystem modeling , 2007, Int. J. Appl. Earth Obs. Geoinformation.

[70]  Paul J. Curran,et al.  Remote sensing the biochemical composition of a slash pine canopy , 1997, IEEE Trans. Geosci. Remote. Sens..

[71]  G. Asner Biophysical and Biochemical Sources of Variability in Canopy Reflectance , 1998 .

[72]  Miska Luoto,et al.  Plant species richness and persistence of rare plants in abandoned semi-natural grasslands in northern Europe , 2005 .

[73]  W. Gould REMOTE SENSING OF VEGETATION, PLANT SPECIES RICHNESS, AND REGIONAL BIODIVERSITY HOTSPOTS , 2000 .

[74]  F. Baret,et al.  TSAVI: A Vegetation Index Which Minimizes Soil Brightness Effects On LAI And APAR Estimation , 1989, 12th Canadian Symposium on Remote Sensing Geoscience and Remote Sensing Symposium,.

[75]  Erin B. Wetherley,et al.  Hyperspectral Vegetation Indices , 2018, Hyperspectral Indices and Image Classifications for Agriculture and Vegetation.

[76]  J. Bakker,et al.  Constraints in the restoration of ecological diversity in grassland and heathland communities. , 1999, Trends in ecology & evolution.

[77]  C. Tucker Red and photographic infrared linear combinations for monitoring vegetation , 1979 .

[78]  B. Rock,et al.  Detection of changes in leaf water content using Near- and Middle-Infrared reflectances , 1989 .

[79]  L. D. Miller,et al.  Remote mapping of standing crop biomass for estimation of the productivity of the shortgrass prairie, Pawnee National Grasslands, Colorado , 1972 .

[80]  Ron Wehrens,et al.  The pls Package: Principal Component and Partial Least Squares Regression in R , 2007 .

[81]  Stuart Barr,et al.  Characterising soil moisture in transport corridor environments using airborne LIDAR and CASI data , 2012 .

[82]  Sebastian Schmidtlein,et al.  Imaging spectroscopy as a tool for mapping Ellenberg indicator values , 2005 .

[83]  Moon Sung Kim THE USE OF NARROW SPECTRAL BANDS FOR IMPROVING REMOTE SENSING ESTIMATIONS OF FRACTIONALLY ABSORBED PHOTOSYNTHETICALLY ACTIVE RADIATION , 1994 .

[84]  S. M. Jong,et al.  Above‐ground biomass assessment of Mediterranean forests using airborne imaging spectrometry: the DAIS Peyne experiment , 2003 .

[85]  G. Daily Nature's services: societal dependence on natural ecosystems. , 1998 .

[86]  R. Cramer Partial Least Squares (PLS): Its strengths and limitations , 1993 .

[87]  C. François,et al.  Towards universal broad leaf chlorophyll indices using PROSPECT simulated database and hyperspectral reflectance measurements , 2004 .

[88]  J. Schellberg,et al.  Cutting frequency vs. N application: effect of a 20‐year management in Lolio‐Cynosuretum grassland , 2011 .

[89]  Armando Apan,et al.  Formulation and assessment of narrow-band vegetation indices from EO-1 hyperion imagery for discriminating sugarcane disease , 2003 .

[90]  Anming Bao,et al.  Different units of measurement of carotenoids estimation in cotton using hyperspectral indices and partial least square regression , 2014 .

[91]  T. Szymura,et al.  Bioindication with Ellenberg's indicator values: A comparison with measured parameters in Central European oak forests , 2014 .

[92]  J. Peñuelas,et al.  The red edge position and shape as indicators of plant chlorophyll content, biomass and hydric status. , 1994 .

[93]  C. Field,et al.  A narrow-waveband spectral index that tracks diurnal changes in photosynthetic efficiency , 1992 .

[94]  J. Dengler,et al.  European grassland ecosystems: threatened hotspots of biodiversity , 2013, Biodiversity and Conservation.

[95]  J. Peñuelas,et al.  Remote sensing of nitrogen and lignin in Mediterranean vegetation from AVIRIS data: Decomposing biochemical from structural signals , 2002 .

[96]  M. Schlerf,et al.  Remote sensing of forest biophysical variables using HyMap imaging spectrometer data , 2005 .

[97]  D. Sims,et al.  Optimum pixel size for hyperspectral studies of ecosystem function in southern California chaparral and grassland , 2003 .

[98]  Lubomír Tichý,et al.  JUICE, software for vegetation classification , 2002 .

[99]  M. Fladeland,et al.  Remote sensing for biodiversity science and conservation , 2003 .

[100]  M. Diekmann Species indicator values as an important tool in applied plant ecology – a review , 2003 .

[101]  T. Dutoit,et al.  Vegetation, soils and seed banks of limestone grasslands are still impacted by former cultivation one century after abandonment , 2012 .

[102]  Scot E. Smith,et al.  Vegetation indices as indicators of damage by the sunn pest (Hemiptera: Scutelleridae) to field grown wheat , 2008 .

[103]  T. Jackson,et al.  Vegetation water content estimation for corn and soybeans using spectral indices derived from MODIS near- and short-wave infrared bands , 2005 .

[104]  Hannes Feilhauer,et al.  Combining Isomap ordination and imaging spectroscopy to map continuous floristic gradients in a heterogeneous landscape , 2011 .

[105]  Carsten Thies,et al.  REVIEWS AND SYNTHESES Landscape perspectives on agricultural intensification and biodiversity - ecosystem service management , 2005 .

[106]  S. Schmidtlein,et al.  Mapping of continuous floristic gradients in grasslands using hyperspectral imagery , 2004 .

[107]  W. Cornwell,et al.  Regional and local patterns in plant species richness with respect to resource availability , 2003 .

[108]  J. Schjoerring,et al.  Reflectance measurement of canopy biomass and nitrogen status in wheat crops using normalized difference vegetation indices and partial least squares regression , 2003 .

[109]  Rhett L. Mohler,et al.  Estimating Canopy Nitrogen Content in a Heterogeneous Grassland with Varying Fire and Grazing Treatments: Konza Prairie, Kansas, USA , 2014, Remote. Sens..

[110]  S. Bagella,et al.  Effects of long-term management practices on grassland plant assemblages in Mediterranean cork oak silvo-pastoral systems , 2013, Plant Ecology.

[111]  K. Itten,et al.  Hyperspectral remote sensing for estimating aboveground biomass and for exploring species richness patterns of grassland habitats , 2011 .

[112]  Honor C. Prentice,et al.  Small-scale plant species richness and evenness in semi-natural grasslands respond differently to habitat fragmentation. , 2009 .

[113]  G. Tyler,et al.  Effect of wet and dry cycles in calcareous soil on mineral nutrient uptake of two grasses, Agrostis stolonifera L. and Festuca ovina L. , 2000, Plant and Soil.

[114]  W. Cohen,et al.  An improved strategy for regression of biophysical variables and Landsat ETM+ data. , 2003 .

[115]  U. Benz,et al.  The EnMAP hyperspectral imager—An advanced optical payload for future applications in Earth observation programmes , 2006 .

[116]  J. A. Schell,et al.  Monitoring vegetation systems in the great plains with ERTS , 1973 .

[117]  T. Reitalu,et al.  Dark diversity in dry calcareous grasslands is determined by dispersal ability and stress-tolerance , 2015 .

[118]  R. Marrs,et al.  Using compositional and functional indicators for biodiversity conservation monitoring of semi-natural grasslands in Scotland , 2014 .

[119]  Gérard Dedieu,et al.  Grassland modeling and monitoring with SPOT-4 VEGETATION instrument during the 1997–1999 SALSA experiment , 2000 .

[120]  N. Buchmann,et al.  Prediction of herbage yield in grassland: How well do Ellenberg N-values perform? , 2007 .

[121]  S. Ollinger Sources of variability in canopy reflectance and the convergent properties of plants. , 2011, The New phytologist.

[122]  B. Emmett,et al.  A new net mineralizable nitrogen assay improves predictions of floristic composition , 2011 .

[123]  J. Dengler,et al.  Biodiversity of Palaearctic grasslands: a synthesis , 2014 .

[124]  S. Wold,et al.  PLS: Partial Least Squares Projections to Latent Structures , 1993 .