BacWGSTdb, a database for genotyping and source tracking bacterial pathogens
暂无分享,去创建一个
[1] F. Lauro,et al. Population Dynamics of an Acinetobacter baumannii Clonal Complex during Colonization of Patients , 2014, Journal of Clinical Microbiology.
[2] N. Saitou,et al. The neighbor-joining method: a new method for reconstructing phylogenetic trees. , 1987, Molecular biology and evolution.
[3] S. Peacock,et al. Rapid whole-genome sequencing of bacterial pathogens in the clinical microbiology laboratory--pipe dream or reality? , 2012, The Journal of antimicrobial chemotherapy.
[4] Federico Perez,et al. New Insights into Dissemination and Variation of the Health Care-Associated Pathogen Acinetobacter baumannii from Genomic Analysis , 2014, mBio.
[5] Mark J. Mandel,et al. Genome-Wide Identification of Acinetobacter baumannii Genes Necessary for Persistence in the Lung , 2014, mBio.
[6] E. Castro-Nallar,et al. Pathogen typing in the genomics era: MLST and the future of molecular epidemiology. , 2013, Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases.
[7] K. Jolley,et al. Automated extraction of typing information for bacterial pathogens from whole genome sequence data: Neisseria meningitidis as an exemplar. , 2013, Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin.
[8] K. Jolley,et al. Using multilocus sequence typing to study bacterial variation: prospects in the genomic era. , 2014, Future microbiology.
[9] Rasko Leinonen,et al. The sequence read archive: explosive growth of sequencing data , 2011, Nucleic Acids Res..
[10] Keith A. Jolley,et al. A Gene-By-Gene Approach to Bacterial Population Genomics: Whole Genome MLST of Campylobacter , 2012, Genes.
[11] M. Achtman,et al. Multilocus sequence typing: a portable approach to the identification of clones within populations of pathogenic microorganisms. , 1998, Proceedings of the National Academy of Sciences of the United States of America.
[12] Martin C. J. Maiden,et al. BIGSdb: Scalable analysis of bacterial genome variation at the population level , 2010, BMC Bioinformatics.
[13] Tim Kovacs,et al. TreeVector: Scalable, Interactive, Phylogenetic Trees for the Web , 2010, PloS one.
[14] Yan Zhang,et al. PATRIC, the bacterial bioinformatics database and analysis resource , 2013, Nucleic Acids Res..
[15] David L. Wheeler,et al. GenBank , 2015, Nucleic Acids Res..
[16] C. Bertelli,et al. Rapid bacterial genome sequencing: methods and applications in clinical microbiology. , 2013, Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases.
[17] C. Chiu,et al. Risk Factors and Outcome Analysis of Acinetobacter baumannii Complex Bacteremia in Critical Patients* , 2014, Critical care medicine.
[18] P. O’Toole,et al. Next-generation sequencing technologies and their impact on microbial genomics. , 2013, Briefings in functional genomics.
[19] J. Marschall,et al. Molecular Epidemiology of Carbapenem-Nonsusceptible Acinetobacter baumannii in the United States , 2011, Journal of Clinical Microbiology.
[20] Mark Johnson,et al. NCBI BLAST: a better web interface , 2008, Nucleic Acids Res..
[21] A. Friedrich,et al. Overview of molecular typing methods for outbreak detection and epidemiological surveillance. , 2013, Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin.
[22] J. Bray,et al. MLST revisited: the gene-by-gene approach to bacterial genomics , 2013, Nature Reviews Microbiology.
[23] Yunsong Yu,et al. Wide distribution of CC92 carbapenem-resistant and OXA-23-producing Acinetobacter baumannii in multiple provinces of China. , 2013, International journal of antimicrobial agents.
[24] Richard Gibson,et al. Content discovery and retrieval services at the European Nucleotide Archive , 2014, Nucleic Acids Res..
[25] M. Nei,et al. Prospects for inferring very large phylogenies by using the neighbor-joining method. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[26] James A. Foster,et al. Phylogenetics Clearcut : a fast implementation of relaxed neighbor joining , 2006 .
[27] Daniel J. Wilson,et al. Transforming clinical microbiology with bacterial genome sequencing , 2012, Nature Reviews Genetics.
[28] S. Salzberg,et al. Versatile and open software for comparing large genomes , 2004, Genome Biology.
[29] David M. Aanensen,et al. The multilocus sequence typing network: mlst.net , 2005, Nucleic Acids Res..
[30] M. Maiden. Multilocus sequence typing of bacteria. , 2006, Annual review of microbiology.