Integrative analysis of the human cis-antisense gene pairs, miRNAs and their transcription regulation patterns
暂无分享,去创建一个
Vladimir A. Kuznetsov | Yuriy L. Orlov | Y. Orlov | V. Kuznetsov | O. Grinchuk | Piroon Jenjaroenpun | Piroon Jenjaroenpun | Oleg V. Grinchuk | Jiangtao Zhou | Jiangtao Zhou | P. Jenjaroenpun
[1] C. Liang,et al. Altered microRNA expression in patients with non-obstructive azoospermia , 2009, Reproductive biology and endocrinology : RB&E.
[2] Laurence D. Hurst,et al. Evidence for a preferential targeting of 3′-UTRs by cis-encoded natural antisense transcripts , 2005, Nucleic acids research.
[3] P. Djian,et al. Basonuclins 1 and 2, whose genes share a common origin, are proteins with widely different properties and functions , 2006, Proceedings of the National Academy of Sciences.
[4] Claes Wahlestedt,et al. RNA interference is not involved in natural antisense mediated regulation of gene expression in mammals , 2006, Genome Biology.
[5] Y. Ogawa,et al. Antisense regulation in X inactivation and autosomal imprinting , 2003, Cytogenetic and Genome Research.
[6] Z. Mourelatos,et al. Emerging roles of microRNAs as molecular switches in the integrated circuit of the cancer cell. , 2009, RNA.
[7] Michal Galdzicki,et al. Mammalian overlapping genes: the comparative perspective. , 2004, Genome research.
[8] A. Werner,et al. Processing of naturally occurring sense/antisense transcripts of the vertebrate Slc34a gene into short RNAs. , 2008, Physiological genomics.
[9] Zuo-min Zhou,et al. Identification and characterization of a novel human testis-specific Golgi protein, NYD-SP12. , 2003, Molecular human reproduction.
[10] Yong Zhang,et al. NATsDB: Natural Antisense Transcripts DataBase , 2006, Nucleic Acids Res..
[11] A. Camargo,et al. Sense-antisense pairs in mammals: functional and evolutionary considerations , 2007, Genome Biology.
[12] S. Seno,et al. A Method for Similarity Search of Genomic Positional Expression Using CAGE , 2006, PLoS genetics.
[13] C. Croce,et al. Oncogenic All1 fusion proteins target Drosha-mediated microRNA processing , 2007, Proceedings of the National Academy of Sciences.
[14] V. Kuznetsov,et al. General statistics of stochastic process of gene expression in eukaryotic cells. , 2002, Genetics.
[15] Colleen D. McCabe,et al. Genome-wide promoter analysis of the SOX4 transcriptional network in prostate cancer cells. , 2009, Cancer research.
[16] Stephen A Krawetz,et al. Success and failure in human spermatogenesis as revealed by teratozoospermic RNAs. , 2007, Human molecular genetics.
[17] K. Morris,et al. Bidirectional Transcription Directs Both Transcriptional Gene Activation and Suppression in Human Cells , 2008, PLoS genetics.
[18] Xiaoqiu Huang,et al. Over 20% of human transcripts might form sense-antisense pairs. , 2004, Nucleic acids research.
[19] Erez Y. Levanon,et al. Widespread occurrence of antisense transcription in the human genome , 2003, Nature Biotechnology.
[20] T. Gingeras,et al. Genome-wide transcription and the implications for genomic organization , 2007, Nature Reviews Genetics.
[21] Long Yu,et al. Natural antisense transcripts of Alzheimer's disease associated genes , 2006, DNA sequence : the journal of DNA sequencing and mapping.
[22] R. Mcinnes,et al. Natural antisense transcripts associated with genes involved in eye development. , 2005, Human molecular genetics.
[23] C. Anderson,et al. Antisense-induced ribosomal frameshifting , 2006, Nucleic acids research.
[24] S. Chisholm,et al. Properties of overlapping genes are conserved across microbial genomes. , 2004, Genome research.
[25] Sin Lam Tan,et al. Complex Loci in Human and Mouse Genomes , 2006, PLoS genetics.
[26] J. Lawrence,et al. Molecular anatomy of a speckle. , 2006, The anatomical record. Part A, Discoveries in molecular, cellular, and evolutionary biology.
[27] Yu-Ping Wang,et al. Correlation of expression profiles between microRNAs and mRNA targets using NCI-60 data , 2009, BMC Genomics.
[28] C. Croce,et al. A microRNA expression signature of human solid tumors defines cancer gene targets , 2006, Proceedings of the National Academy of Sciences of the United States of America.
[29] Izabela Makalowska,et al. Overlapping genes in vertebrate genomes , 2005, Comput. Biol. Chem..
[30] R. Place,et al. Small dsRNAs induce transcriptional activation in human cells , 2006, Proceedings of the National Academy of Sciences.
[31] Vladimir A. Kuznetsov,et al. Quality Assessment of the Affymetrix U133A&B Probesets by Target Sequence Mapping and Expression Data Analysis , 2007, Silico Biol..
[32] Zhenzhen Wang,et al. Association of LKB1 with a WD-repeat protein WDR6 is implicated in cell growth arrest and p27Kip1 induction , 2007, Molecular and Cellular Biochemistry.
[33] O. Borsani,et al. Endogenous siRNAs Derived from a Pair of Natural cis-Antisense Transcripts Regulate Salt Tolerance in Arabidopsis , 2005, Cell.
[34] S. Batalov,et al. Antisense Transcription in the Mammalian Transcriptome , 2005, Science.
[35] K. Kinzler,et al. The Antisense Transcriptomes of Human Cells , 2008, Science.
[36] C. Sander,et al. A Mammalian microRNA Expression Atlas Based on Small RNA Library Sequencing , 2007, Cell.
[37] Eugene V Koonin,et al. Purifying and directional selection in overlapping prokaryotic genes. , 2002, Trends in genetics : TIG.
[38] David L. Spector,et al. 3′ End Processing of a Long Nuclear-Retained Noncoding RNA Yields a tRNA-like Cytoplasmic RNA , 2008, Cell.
[39] Yoshikazu Nakamura,et al. Altered expression profiles of microRNAs during TPA-induced differentiation of HL-60 cells. , 2004, Biochemical and biophysical research communications.
[40] S. Buratowski,et al. Gene Expression--Where to Start? , 2008, Science.
[41] K. Schulze-Osthoff,et al. Regulation of apoptosis by alternative pre-mRNA splicing. , 2005, Molecular cell.
[42] A. Feinberg,et al. Epigenetic silencing of tumour suppressor gene p15 by its antisense RNA , 2008, Nature.
[43] Masato Nagino,et al. let-7 regulates Dicer expression and constitutes a negative feedback loop. , 2008, Carcinogenesis.
[44] V. Kim,et al. Small RNAs: classification, biogenesis, and function. , 2005, Molecules and cells.
[45] Gopenath Ts,et al. Genetics of human male infertility. , 2009, Singapore medical journal.
[46] B. Peters,et al. Large-scale identification of novel transcripts in the human genome. , 2007, Genome research.
[47] J. Zhu,et al. Overlapping transcripts, double-stranded RNA and antisense regulation: A genomic perspective , 2006, Cellular and Molecular Life Sciences CMLS.
[48] Zeng Sheng,et al. Natural Antisense as Potential Regulator of Alternative Initiation, Splicing and Termination , 2005, Silico Biol..
[49] A. Bosserhoff,et al. Identification of novel sense and antisense transcription at the TRPM2 locus in cancer , 2008, Cell Research.
[50] J. Steitz,et al. Subnuclear compartmentalization of transiently expressed polyadenylated pri-microRNAs: Processing at transcription sites or accumulation in SC35 foci , 2009, Cell cycle.
[51] V A Kuznetsov,et al. GENOME-WIDE CO-EXPRESSION PATTERNS OF HUMAN CIS-ANTISENSE GENE PAIRS , 2006 .
[52] F. Galibert,et al. Transcriptional analysis of the 69-kb sequence centromeric to HLA-J: A dense and complex structure of five genes , 2000, Mammalian Genome.
[53] X. Shirley Liu,et al. Genome-wide in silico identification and analysis of cis natural antisense transcripts (cis-NATs) in ten species , 2006, Nucleic acids research.
[54] Joshy George,et al. Genetic reclassification of histologic grade delineates new clinical subtypes of breast cancer. , 2006, Cancer research.
[55] M. Kerin,et al. Gain of imprinting of SLC22A18 sense and antisense transcripts in human breast cancer. , 2006, Genomics.
[56] Joshua J. Forman,et al. A search for conserved sequences in coding regions reveals that the let-7 microRNA targets Dicer within its coding sequence , 2008, Proceedings of the National Academy of Sciences.
[57] M. Azim Surani,et al. MicroRNA Biogenesis Is Required for Mouse Primordial Germ Cell Development and Spermatogenesis , 2008, PloS one.
[58] Kim Vn,et al. Small RNAs: classification, biogenesis, and function. , 2005, Molecules and cells.
[59] Lei Liu,et al. In silico discovery of human natural antisense transcripts , 2006, BMC Bioinformatics.
[60] Jun Chen,et al. A large quantity of novel human antisense transcripts detected by LongSAGE , 2006, Bioinform..
[61] Jay Shendure,et al. Computational discovery of sense-antisense transcription in the human and mouse genomes , 2002, Genome Biology.
[62] Ben Lehner,et al. Antisense transcripts in the human genome. , 2002, Trends in genetics : TIG.
[63] A. Werner,et al. Expression profiling of antisense transcripts on DNA arrays. , 2007, Physiological genomics.