Molecular structural basis for polymorphism in Alzheimer's β-amyloid fibrils

We describe a full structural model for amyloid fibrils formed by the 40-residue β-amyloid peptide associated with Alzheimer's disease (Aβ1–40), based on numerous constraints from solid state NMR and electron microscopy. This model applies specifically to fibrils with a periodically twisted morphology, with twist period equal to 120 ± 20 nm (defined as the distance between apparent minima in fibril width in negatively stained transmission electron microscope images). The structure has threefold symmetry about the fibril growth axis, implied by mass-per-length data and the observation of a single set of 13C NMR signals. Comparison with a previously reported model for Aβ1–40 fibrils with a qualitatively different, striated ribbon morphology reveals the molecular basis for polymorphism. At the molecular level, the 2 Aβ1–40 fibril morphologies differ in overall symmetry (twofold vs. threefold), the conformation of non-β-strand segments, and certain quaternary contacts. Both morphologies contain in-register parallel β-sheets, constructed from nearly the same β-strand segments. Because twisted and striated ribbon morphologies are also observed for amyloid fibrils formed by other polypeptides, such as the amylin peptide associated with type 2 diabetes, these structural variations may have general implications.

[1]  R. Tycko,et al.  Molecular structure of amyloid fibrils: insights from solid-state NMR , 2006, Quarterly Reviews of Biophysics.

[2]  Atanas V Koulov,et al.  Functional amyloid--from bacteria to humans. , 2007, Trends in biochemical sciences.

[3]  Jonathan S. Weissman,et al.  The structural basis of yeast prion strain variants , 2007, Nature.

[4]  U. Baxa,et al.  Mass Analysis by Scanning Transmission Electron Microscopy and Electron Diffraction Validate Predictions of Stacked β-Solenoid Model of HET-s Prion Fibrils* , 2007, Journal of Biological Chemistry.

[5]  Jonathan S. Weissman,et al.  The physical basis of how prion conformations determine strain phenotypes , 2006, Nature.

[6]  C. Dobson,et al.  Protein misfolding, functional amyloid, and human disease. , 2006, Annual review of biochemistry.

[7]  Robert A. Grothe,et al.  Structure of the cross-β spine of amyloid-like fibrils , 2005, Nature.

[8]  Y. Ishii 13C-13C dipolar recoupling under very fast magic angle spinning in solid-state nuclear magnetic resonance: Applications to distance measurements, spectral assignments, and high-throughput secondary-structure determination , 2001 .

[9]  A. Bax,et al.  Protein backbone angle restraints from searching a database for chemical shift and sequence homology , 1999, Journal of biomolecular NMR.

[10]  R. Wickner,et al.  Prions of fungi: inherited structures and biological roles , 2007, Nature Reviews Microbiology.

[11]  J. Hašek,et al.  Cold-active β-galactosidase from Arthrobacter sp. C2-2 forms compact 660 kDa hexamers : Crystal structure at 1.9 Å resolution , 2005 .

[12]  U Aebi,et al.  Amyloid fibril formation from full-length and fragments of amylin. , 2000, Journal of structural biology.

[13]  Beat H. Meier,et al.  Amyloid Fibrils of the HET-s(218–289) Prion Form a β Solenoid with a Triangular Hydrophobic Core , 2008, Science.

[14]  R. Tycko,et al.  Experimental constraints on quaternary structure in Alzheimer's beta-amyloid fibrils. , 2006, Biochemistry.

[15]  J T Finch,et al.  Glutamine repeats as polar zippers: their possible role in inherited neurodegenerative diseases. , 1994, Proceedings of the National Academy of Sciences of the United States of America.

[16]  Gerd Krause,et al.  General structural motifs of amyloid protofilaments , 2006, Proceedings of the National Academy of Sciences.

[17]  S. Müller,et al.  Multiple Assembly Pathways Underlie Amyloid-β Fibril Polymorphisms , 2005 .

[18]  Christopher M. Dobson,et al.  The protofilament structure of insulin amyloid fibrils , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[19]  R. Tycko,et al.  Amyloid of the prion domain of Sup35p has an in-register parallel β-sheet structure , 2006, Proceedings of the National Academy of Sciences.

[20]  Richard D. Leapman,et al.  Self-Propagating, Molecular-Level Polymorphism in Alzheimer's ß-Amyloid Fibrils , 2005, Science.

[21]  S. Lindquist,et al.  Strains of [PSI+] are distinguished by their efficiencies of prion‐mediated conformational conversion , 2001, The EMBO journal.

[22]  Peter Chien,et al.  Emerging principles of conformation-based prion inheritance. , 2004, Annual review of biochemistry.

[23]  C. Jaroniec,et al.  Frequency selective heteronuclear dipolar recoupling in rotating solids: accurate (13)C-(15)N distance measurements in uniformly (13)C,(15)N-labeled peptides. , 2001, Journal of the American Chemical Society.

[24]  N. Makarava,et al.  Dichotomous versus palm‐type mechanisms of lateral assembly of amyloid fibrils , 2006, Protein science : a publication of the Protein Society.

[25]  D. Walsh,et al.  Exogenous Induction of Cerebral ß-Amyloidogenesis Is Governed by Agent and Host , 2006, Science.

[26]  T. Benzinger,et al.  Propagating structure of Alzheimer’s β-amyloid(10–35) is parallel β-sheet with residues in exact register , 1998 .

[27]  Ralf Langen,et al.  Structural and Dynamic Features of Alzheimer's Aβ Peptide in Amyloid Fibrils Studied by Site-directed Spin Labeling* , 2002, The Journal of Biological Chemistry.

[28]  J F Hainfeld,et al.  Mass mapping with the scanning transmission electron microscope. , 1986, Annual review of biophysics and biophysical chemistry.

[29]  R. Tycko,et al.  Polymorphic fibril formation by residues 10-40 of the Alzheimer's beta-amyloid peptide. , 2006, Biophysical journal.

[30]  J T Finch,et al.  Amyloid fibers are water-filled nanotubes , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[31]  Heather T. McFarlane,et al.  Atomic structures of amyloid cross-β spines reveal varied steric zippers , 2007, Nature.

[32]  P. Lansbury,et al.  Non-genetic propagation of strain-specific properties of scrapie prion protein , 1995, Nature.

[33]  C. Jaroniec,et al.  3D TEDOR NMR experiments for the simultaneous measurement of multiple carbon-nitrogen distances in uniformly (13)C,(15)N-labeled solids. , 2002, Journal of the American Chemical Society.

[34]  V. Gaponenko,et al.  Diluting abundant spins by isotope edited radio frequency field assisted diffusion. , 2004, Journal of the American Chemical Society.

[35]  R. Wetzel,et al.  Plasticity of amyloid fibrils. , 2007, Biochemistry.

[36]  R. Tycko,et al.  Parallel beta-sheets and polar zippers in amyloid fibrils formed by residues 10-39 of the yeast prion protein Ure2p. , 2005, Biochemistry.

[37]  R. Tycko Symmetry-based constant-time homonuclear dipolar recoupling in solid state NMR. , 2007, The Journal of chemical physics.

[38]  Richard Leapman,et al.  Peptide conformation and supramolecular organization in amylin fibrils: constraints from solid-state NMR. , 2007, Biochemistry.

[39]  S. Prusiner,et al.  Evidence for the Conformation of the Pathologic Isoform of the Prion Protein Enciphering and Propagating Prion Diversity , 1996, Science.

[40]  R. Leapman,et al.  Supramolecular structural constraints on Alzheimer's beta-amyloid fibrils from electron microscopy and solid-state nuclear magnetic resonance. , 2002, Biochemistry.

[41]  C. Glabe,et al.  Surfactant properties of Alzheimer's A beta peptides and the mechanism of amyloid aggregation. , 1994, The Journal of biological chemistry.

[42]  J. J. Balbach,et al.  Supramolecular Structure in Full-Length Alzheimer's β-Amyloid Fibrils: Evidence for a Parallel β-Sheet Organization from Solid-State Nuclear Magnetic Resonance , 2002 .