PageMan: An interactive ontology tool to generate, display, and annotate overview graphs for profiling experiments
暂无分享,去创建一个
Yves Gibon | Mark Stitt | Henning Redestig | Björn Usadel | Alisdair R. Fernie | Axel Nagel | Dirk Steinhauser | Oliver E. Bläsing | Nese Sreenivasulu | Leonard Krall | Matthew A. Hannah | Fabien Poree | B. Usadel | M. Stitt | O. Bläsing | Y. Gibon | A. Nagel | A. Fernie | Henning Redestig | N. Sreenivasulu | D. Steinhauser | L. Krall | M. Hannah | F. Poree | Axel Nagel
[1] Purvesh Khatri,et al. Ontological analysis of gene expression data: current tools, limitations, and open problems , 2005, Bioinform..
[2] Roland Eils,et al. Group testing for pathway analysis improves comparability of different microarray datasets , 2006, Bioinform..
[3] Norman Pavelka,et al. AMDA: an R package for the automated microarray data analysis , 2006, BMC Bioinformatics.
[4] B. Usadel,et al. The Lipopolysaccharide of Sinorhizobium meliloti Suppresses Defense-Associated Gene Expression in Cell Cultures of the Host Plant Medicago truncatula1[W][OA] , 2006, Plant Physiology.
[5] S. Rhee,et al. AraCyc: A Biochemical Pathway Database for Arabidopsis1 , 2003, Plant Physiology.
[6] Gordon K. Smyth,et al. limma: Linear Models for Microarray Data , 2005 .
[7] Yves Gibon,et al. Sugars and Circadian Regulation Make Major Contributions to the Global Regulation of Diurnal Gene Expression in Arabidopsis[W][OA] , 2005, The Plant Cell Online.
[8] Rafael A. Irizarry,et al. Bioinformatics and Computational Biology Solutions using R and Bioconductor , 2005 .
[9] F. Carrari,et al. Conversion of MapMan to Allow the Analysis of Transcript Data from Solanaceous Species: Effects of Genetic and Environmental Alterations in Energy Metabolism in the Leaf , 2006, Plant Molecular Biology.
[10] Hideyuki Suzuki,et al. KaPPA-View. A Web-Based Analysis Tool for Integration of Transcript and Metabolite Data on Plant Metabolic Pathway Maps1[w] , 2005, Plant Physiology.
[11] Dennis B. Troup,et al. NCBI GEO: mining millions of expression profiles—database and tools , 2004, Nucleic Acids Res..
[12] Falk Schreiber,et al. VANTED: A system for advanced data analysis and visualization in the context of biological networks , 2006, BMC Bioinformatics.
[13] Jean YH Yang,et al. Bioconductor: open software development for computational biology and bioinformatics , 2004, Genome Biology.
[14] C. Lanczos,et al. A Precision Approximation of the Gamma Function , 1964 .
[15] Paul Pavlidis,et al. ErmineJ: Tool for functional analysis of gene expression data sets , 2005, BMC Bioinformatics.
[16] M. Ashburner,et al. Gene Ontology: tool for the unification of biology , 2000, Nature Genetics.
[17] Rafael A Irizarry,et al. Exploration, normalization, and summaries of high density oligonucleotide array probe level data. , 2003, Biostatistics.
[18] S. Rhee,et al. MAPMAN: a user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes. , 2004, The Plant journal : for cell and molecular biology.
[19] Nick James,et al. NASCArrays: a repository for microarray data generated by NASC's transcriptomics service , 2004, Nucleic Acids Res..
[20] Frank Klawonn,et al. JProGO: a novel tool for the functional interpretation of prokaryotic microarray data using Gene Ontology information , 2006, Nucleic Acids Res..
[21] John N. Weinstein,et al. High-Throughput GoMiner, an 'industrial-strength' integrative gene ontology tool for interpretation of multiple-microarray experiments, with application to studies of Common Variable Immune Deficiency (CVID) , 2005, BMC Bioinformatics.
[22] Sergio Contrino,et al. ArrayExpress—a public repository for microarray gene expression data at the EBI , 2004, Nucleic Acids Res..
[23] Matthew A Hannah,et al. A Global Survey of Gene Regulation during Cold Acclimation in Arabidopsis thaliana , 2005, PLoS genetics.
[24] Joachim Selbig,et al. Extension of the Visualization Tool MapMan to Allow Statistical Analysis of Arrays, Display of Coresponding Genes, and Comparison with Known Responses1 , 2005, Plant Physiology.
[25] Y. Benjamini,et al. Controlling the false discovery rate: a practical and powerful approach to multiple testing , 1995 .
[26] Y. Benjamini,et al. THE CONTROL OF THE FALSE DISCOVERY RATE IN MULTIPLE TESTING UNDER DEPENDENCY , 2001 .