East African farming communities face complex challenges regarding food and feed productivity. Primary production systems are under stress, nutritional choices are changing and the relationship between development and agriculture is undergoing profound transformation. In the face of severe threat of soil erosion, East African agro-pastoral systems are now at a tipping point and there has never been a greater urgency for evidence-led sustainable land management interventions to reverse degradation of natural resources that support food and water security. A key barrier, however, is a lack of high spatial resolution soil health data wherein collecting such information is beyond conventional research means. This research tests whether bridging this data gap can be achieved through a coordinated citizen science programme. Accessible and portable technology is currently available in the form of hand-held soil scanners that can enable farmers to become citizen scientists empowered to collect data to establish research data bases that support critical landscape decisions. The aim of the work was to test the potential for using soil scanners as a tool for mapping whole community soil health characteristics, using soil organic matter as an indicator, down to farm-scale; a resolution that is beyond that achievable in conventional research, with the ultimate objective to deliver information that empowers stakeholders to create a sustainable community landscape plan.