The DIX domain of Dishevelled confers Wnt signaling by dynamic polymerization

The Wnt signaling pathway controls numerous cell fates in animal development and is also a major cancer pathway. Dishevelled (Dvl) transduces the Wnt signal by interacting with the cytoplasmic Axin complex. Dvl and Axin each contain a DIX domain whose molecular properties and structure are unknown. Here, we demonstrate that the DIX domain of Dvl2 mediates dynamic polymerization, which is essential for the signaling activity of Dvl2. The purified domain polymerizes gradually, reversibly and in a concentration dependent manner, ultimately forming fibrils. The Axin DIX domain has a novel structural fold largely composed of β-strands that engage in head-to-tail self-interaction to form filaments in the crystal. The DIX domain thus seems to mediate the formation of a dynamic interaction platform with a high local concentration of binding sites for transient Wnt signaling partners; this represents a previously uncharacterized mechanistic principle, signaling by reversible polymerization.

[1]  P. Kraulis A program to produce both detailed and schematic plots of protein structures , 1991 .

[2]  G. Rodrigues,et al.  Dimerization mediated through a leucine zipper activates the oncogenic potential of the met receptor tyrosine kinase , 1993, Molecular and cellular biology.

[3]  D. McRee Practical Protein Crystallography , 1993 .

[4]  Collaborative Computational,et al.  The CCP4 suite: programs for protein crystallography. , 1994, Acta crystallographica. Section D, Biological crystallography.

[5]  H. Theisen,et al.  dishevelled is required during wingless signaling to establish both cell polarity and cell identity. , 1994, Development.

[6]  N. Perrimon,et al.  The Drosophila segment polarity gene dishevelled encodes a novel protein required for response to the wingless signal. , 1994, Genes & development.

[7]  J. Klingensmith,et al.  The dishevelled protein is modified by wingless signaling in Drosophila. , 1995, Genes & development.

[8]  R. Moon,et al.  A frizzled homolog functions in a vertebrate Wnt signaling pathway , 1996, Current Biology.

[9]  R. Nusse,et al.  Wnt signaling: a common theme in animal development. , 1997, Genes & development.

[10]  M. Semënov,et al.  Human dishevelled genes constitute a DHR-containing multigene family. , 1997, Genomics.

[11]  K. Kinzler,et al.  Constitutive Transcriptional Activation by a β-Catenin-Tcf Complex in APC−/− Colon Carcinoma , 1997, Science.

[12]  L. Serpell,et al.  The molecular basis of amyloidosis , 1997, Cellular and Molecular Life Sciences CMLS.

[13]  G. Bricogne,et al.  [27] Maximum-likelihood heavy-atom parameter refinement for multiple isomorphous replacement and multiwavelength anomalous diffraction methods. , 1997, Methods in enzymology.

[14]  M. Boutros,et al.  Dishevelled Activates JNK and Discriminates between JNK Pathways in Planar Polarity and wingless Signaling , 1998, Cell.

[15]  N. Perrimon,et al.  Differential Recruitment of Dishevelled Provides Signaling Specificity in the Planar Cell Polarity and Wingless Signaling Pathways in Drosophila, Planar Cell Polarity (pcp) Signaling Is Mediated by the Receptor Frizzled (fz) and Transduced by Dishevelled (dsh). Wingless (wg) Signaling Also Requires , 2022 .

[16]  R J Read,et al.  Crystallography & NMR system: A new software suite for macromolecular structure determination. , 1998, Acta crystallographica. Section D, Biological crystallography.

[17]  Akira Kikuchi,et al.  DIX Domains of Dvl and Axin Are Necessary for Protein Interactions and Their Ability To Regulate β-Catenin Stability , 1999, Molecular and Cellular Biology.

[18]  C. Larabell,et al.  Establishment of the Dorsal–Ventral Axis inXenopus Embryos Coincides with the Dorsal Enrichment of Dishevelled That Is Dependent on Cortical Rotation , 1999, The Journal of cell biology.

[19]  Russ Miller,et al.  The design and implementation of SnB version 2.0 , 1999 .

[20]  A G Leslie,et al.  Biological Crystallography Integration of Macromolecular Diffraction Data , 2022 .

[21]  F. Costantini,et al.  Identification of a Domain of Axin That Binds to the Serine/Threonine Protein Phosphatase 2A and a Self-binding Domain* , 1999, The Journal of Biological Chemistry.

[22]  D T Jones,et al.  Protein secondary structure prediction based on position-specific scoring matrices. , 1999, Journal of molecular biology.

[23]  T. Dale,et al.  Interaction of Axin and Dvl‐2 proteins regulates Dvl‐2‐stimulated TCF‐dependent transcription , 1999, The EMBO journal.

[24]  W. Nelson,et al.  Colocalization and Redistribution of Dishevelled and Actin during WNT-Induced Mesenchymal Morphogenesis , 2000, The Journal of cell biology.

[25]  L. Serpell,et al.  Fiber diffraction of synthetic a-synuclein filaments shows amyloid-like cross-b conformation , 2000 .

[26]  L. Serpell,et al.  Fiber diffraction of synthetic alpha-synuclein filaments shows amyloid-like cross-beta conformation. , 2000, Proceedings of the National Academy of Sciences of the United States of America.

[27]  P. Polakis Wnt signaling and cancer. , 2000, Genes & development.

[28]  Ken W. Y. Cho,et al.  Dishevelled phosphorylation, subcellular localization and multimerization regulate its role in early embryogenesis , 2000, The EMBO journal.

[29]  A. Penzo-Méndez,et al.  The C‐terminal cytoplasmic Lys‐Thr‐X‐X‐X‐Trp motif in frizzled receptors mediates Wnt/β‐catenin signalling , 2000, The EMBO journal.

[30]  John E. Walker,et al.  Homologous and Heterologous Inhibitory Effects of ATPase Inhibitor Proteins on F-ATPases* , 2002, The Journal of Biological Chemistry.

[31]  M. Overduin,et al.  The DIX domain targets dishevelled to actin stress fibres and vesicular membranes , 2002, Nature.

[32]  R. Nusse,et al.  A mutational analysis of dishevelled in Drosophila defines novel domains in the dishevelled protein as well as novel suppressing alleles of axin. , 2002, Genetics.

[33]  Michael Kühl,et al.  The ankyrin repeat protein Diversin recruits Casein kinase Iε to the β-catenin degradation complex and acts in both canonical Wnt and Wnt/JNK signaling , 2002 .

[34]  Reinhart Heinrich,et al.  The Roles of APC and Axin Derived from Experimental and Theoretical Analysis of the Wnt Pathway , 2003, PLoS biology.

[35]  C. Carron,et al.  Frizzled receptor dimerization is sufficient to activate the Wnt/β-catenin pathway , 2003, Journal of Cell Science.

[36]  M. Bienz,et al.  A Role of Dishevelled in Relocating Axin to the Plasma Membrane during Wingless Signaling , 2003, Current Biology.

[37]  Jie J. Zheng,et al.  Direct binding of the PDZ domain of Dishevelled to a conserved internal sequence in the C-terminal region of Frizzled. , 2003, Molecular cell.

[38]  James U Bowie,et al.  SAM domains: uniform structure, diversity of function. , 2003, Trends in biochemical sciences.

[39]  Feng Cong,et al.  Wnt signals across the plasma membrane to activate the β-catenin pathway by forming oligomers containing its receptors, Frizzled and LRP , 2004, Development.

[40]  David M. Berman,et al.  Tissue repair and stem cell renewal in carcinogenesis , 2004, Nature.

[41]  M. Stefani Protein misfolding and aggregation: new examples in medicine and biology of the dark side of the protein world. , 2004, Biochimica et biophysica acta.

[42]  James U Bowie,et al.  Derepression by Depolymerization Structural Insights into the Regulation of Yan by Mae , 2004, Cell.

[43]  Xi He,et al.  A mechanism for Wnt coreceptor activation. , 2004, Molecular cell.

[44]  J. Schmitter,et al.  The sequences appended to the amyloid core region of the HET-s prion protein determine higher-order aggregate organization in vivo , 2004, Journal of Cell Science.

[45]  M. Bienz,et al.  The Wnt signalling effector Dishevelled forms dynamic protein assemblies rather than stable associations with cytoplasmic vesicles , 2005, Journal of Cell Science.

[46]  John B. Wallingford,et al.  Subcellular Localization and Signaling Properties of Dishevelled in Developing Vertebrate Embryos , 2005, Current Biology.

[47]  G. Garriga,et al.  MOM-5 frizzled regulates the distribution of DSH-2 to control C. elegans asymmetric neuroblast divisions. , 2005, Developmental biology.

[48]  Feng Ni,et al.  Polymerization of the SAM domain of MAPKKK Ste11 from the budding yeast: Implications for efficient signaling through the MAPK cascades , 2005, Protein science : a publication of the Protein Society.

[49]  Sheng-Cai Lin,et al.  Axin Contains Three Separable Domains That Confer Intramolecular, Homodimeric, and Heterodimeric Interactions Involved in Distinct Functions* , 2005, Journal of Biological Chemistry.

[50]  T. Leonard,et al.  Bacterial chromosome segregation: structure and DNA binding of the Soj dimer — a conserved biological switch , 2005, The EMBO journal.

[51]  D. Zarkower,et al.  DSH-2 regulates asymmetric cell division in the early C. elegans somatic gonad , 2005, Mechanisms of Development.

[52]  G. Bae,et al.  Nuclear localization is required for Dishevelled function in Wnt/β-catenin signaling , 2005, Journal of biology.

[53]  Trevor C. Dale,et al.  Dishevelled (Dvl-2) activates canonical Wnt signalling in the absence of cytoplasmic puncta , 2005, Journal of Cell Science.

[54]  J. Philo Improved methods for fitting sedimentation coefficient distributions derived by time-derivative techniques. , 2006, Analytical biochemistry.

[55]  M. Diaz-Meco,et al.  Cell signaling and function organized by PB1 domain interactions. , 2006, Molecular cell.

[56]  R. Sear Dishevelled: a protein that functions in living cells by phase separating. , 2007, Soft matter.

[57]  Mariann Bienz,et al.  Dynamic recruitment of axin by Dishevelled protein assemblies , 2007, Journal of Cell Science.

[58]  Christof Niehrs,et al.  Wnt Induces LRP6 Signalosomes and Promotes Dishevelled-Dependent LRP6 Phosphorylation , 2007, Science.