Recent progress in stereoselective synthesis with aldolases.

Aldol reactions constitute a powerful methodology for carbon-carbon bond formation in synthetic organic chemistry. Biocatalysis by means of aldolases offers a unique stereoselective and green tool to perform this transformation. Recent advances in the field, fueled by either protein engineering or screening, greatly improved the number of synthetic opportunities from small chiral polyfunctional molecules to highly complex oligosaccharide analogs with potential pharmaceutical relevance. Furthermore, aldolases have been shown to be particularly valuable for obtaining new types of structures (i.e. generate molecular diversity) accessible for investigations in drug discovery. Extensive knowledge arising from biochemical studies and synthetic applications of natural aldolases has fostered the development of novel catalysts, such as the de novo computational design of aldolase enzymes, aldolase ribozymes, or synthetic peptides and foldamers with aldolase activity, outlining first steps toward the creation of tailor-made (bio)catalysts to suit any desired application.

[1]  D. Mink,et al.  Synthesis of aromatic 1,2-amino alcohols utilizing a bienzymatic dynamic kinetic asymmetric transformation , 2007 .

[2]  Georg A. Sprenger,et al.  Microbial aldolases as C–C bonding enzymes—unknown treasures and new developments , 2006, Applied Microbiology and Biotechnology.

[3]  Xavier Garrabou,et al.  Asymmetric self- and cross-aldol reactions of glycolaldehyde catalyzed by D-fructose-6-phosphate aldolase. , 2009, Angewandte Chemie.

[4]  Kunihiko Watanabe,et al.  Purification and Gene Cloning of α-Methylserine Aldolase from Ralstonia sp. Strain AJ110405 and Application of the Enzyme in the Synthesis of α-Methyl-l-Serine , 2008, Applied and Environmental Microbiology.

[5]  H. Weber,et al.  Four types of threonine aldolases: Similarities and differences in kinetics/thermodynamics , 2008 .

[6]  A. Kirschning,et al.  Chemoenzymatic synthesis of CMP-N-acetyl-7-fluoro-7-deoxy-neuraminic acid. , 2008, Carbohydrate research.

[7]  D. Hilvert,et al.  Enhancing activity and controlling stereoselectivity in a designed PLP-dependent aldolase. , 2007, Angewandte Chemie.

[8]  J. Joglar,et al.  Chemoenzymatic Synthesis and Inhibitory Activities of Hyacinthacines A1 and A2 Stereoisomers , 2007 .

[9]  Israel Sánchez-Moreno,et al.  Substrate channelling in an engineered bifunctional aldolase/kinase enzyme confers catalytic advantage for C-C bond formation. , 2009, Chemical communications.

[10]  R. Fuller,et al.  Development of small designer aldolase enzymes: catalytic activity, folding, and substrate specificity. , 2005, Biochemistry.

[11]  M. Famulok,et al.  A ribozyme for the aldol reaction. , 2005, Chemistry & biology.

[12]  Kunihiko Watanabe,et al.  Gene Cloning of α-Methylserine Aldolase from Variovorax paradoxus and Purification and Characterization of the Recombinant Enzyme , 2008 .

[13]  Sven Panke,et al.  Chemical and enzymatic routes to dihydroxyacetone phosphate , 2007, Applied Microbiology and Biotechnology.

[14]  Daniel Mink,et al.  Directed evolution of an industrial biocatalyst: 2-deoxy-D-ribose 5-phosphate aldolase. , 2006, Biotechnology journal.

[15]  D. Mink,et al.  Threonine aldolases—an emerging tool for organic synthesis , 2007 .

[16]  Harshal A. Chokhawala,et al.  High‐Throughput Substrate Specificity Studies of Sialidases by Using Chemoenzymatically Synthesized Sialoside Libraries , 2007, Chembiochem : a European journal of chemical biology.

[17]  H. Sakuraba,et al.  Sequential Aldol Condensation Catalyzed by Hyperthermophilic 2-Deoxy-d-Ribose-5-Phosphate Aldolase , 2007, Applied and Environmental Microbiology.

[18]  Harshal A. Chokhawala,et al.  Enzymatic synthesis of fluorinated mechanistic probes for sialidases and sialyltransferases. , 2007, Journal of the American Chemical Society.

[19]  Chi‐Huey Wong,et al.  Enzymes in Organic Synthesis: Aldolase‐Mediated Synthesis of Iminocyclitols and Novel Heterocycles , 2007 .

[20]  D. Hilvert,et al.  Synthesis of beta-hydroxy-alpha-amino acids with a reengineered alanine racemase. , 2008, Bioorganic & medicinal chemistry letters.

[21]  A. Varki,et al.  Efficient chemoenzymatic synthesis of biotinylated human serum albumin-sialoglycoside conjugates containing O-acetylated sialic acids. , 2007, Organic & biomolecular chemistry.

[22]  S. Servi,et al.  Serine hydroxymethyl transferase from Streptococcus thermophilus and L-threonine aldolase from Escherichia coli as stereocomplementary biocatalysts for the synthesis of beta-hydroxy-alpha,omega-diamino acid derivatives. , 2008, Chemistry.

[23]  D. Hilvert,et al.  Conversion of a PLP-dependent racemase into an aldolase by a single active site mutation. , 2003, Journal of the American Chemical Society.

[24]  Eric A. Althoff,et al.  De Novo Computational Design of Retro-Aldol Enzymes , 2008, Science.

[25]  Matthew A. Windsor,et al.  A rationally designed aldolase foldamer. , 2009, Angewandte Chemie.

[26]  M. Lemaire,et al.  Straightforward chemo-enzymatic synthesis of new aminocyclitols, analogues of valiolamine and their evaluation as glycosidase inhibitors , 2006 .

[27]  R. Mahrwald Modern aldol reactions , 2004 .

[28]  Hai Yu,et al.  Disaccharides as sialic acid aldolase substrates: synthesis of disaccharides containing a sialic acid at the reducing end. , 2007, Angewandte Chemie.

[29]  W. Fessner Aldolases: Enzymes for Making and Breaking CC Bonds , 2008 .

[30]  H. Yoshioka,et al.  Enhanced synthesis of l-threo-3,4-dihydroxyphenylserine by high-density whole-cell biocatalyst of recombinant l-threonine aldolase from Streptomyces avelmitilis , 2009, Biotechnology Letters.

[31]  Ping Xu,et al.  Efficient Whole-Cell Biocatalytic Synthesis of N-Acetyl-D-neuraminic Acid , 2007 .

[32]  A. Nelson,et al.  Structure-guided saturation mutagenesis of N-acetylneuraminic acid lyase for the synthesis of sialic acid mimetics. , 2005, Protein engineering, design & selection : PEDS.

[33]  S. Smirnov,et al.  A novel strategy for enzymatic synthesis of 4-hydroxyisoleucine: identification of an enzyme possessing HMKP (4-hydroxy-3-methyl-2-keto-pentanoate) aldolase activity. , 2007, FEMS microbiology letters.

[34]  Adam Nelson,et al.  Directed evolution of aldolases for exploitation in synthetic organic chemistry , 2008, Archives of biochemistry and biophysics.

[35]  S. Smirnov,et al.  Synthesis of 4-Hydroxyisoleucine by the Aldolase–Transaminase Coupling Reaction and Basic Characterization of the Aldolase from Arthrobacter simplex AKU 626 , 2007, Bioscience, biotechnology, and biochemistry.

[36]  Harshal A. Chokhawala,et al.  Highly efficient chemoenzymatic synthesis of naturally occurring and non-natural alpha-2,6-linked sialosides: a P. damsela alpha-2,6-sialyltransferase with extremely flexible donor-substrate specificity. , 2006, Angewandte Chemie.

[37]  E. Toone,et al.  Mutagenesis of the phosphate‐binding pocket of KDPG aldolase enhances selectivity for hydrophobic substrates , 2007, Protein science : a publication of the Protein Society.

[38]  Pere Clapés,et al.  D-fructose-6-phosphate aldolase in organic synthesis: cascade chemical-enzymatic preparation of sugar-related polyhydroxylated compounds. , 2009, Chemistry.

[39]  Gavin J. Williams,et al.  Creation of a pair of stereochemically complementary biocatalysts. , 2006, Journal of the American Chemical Society.

[40]  Dan Pan,et al.  Characterization of an aldolase-dehydrogenase complex that exhibits substrate channeling in the polychlorinated biphenyls degradation pathway. , 2009, Biochemistry.

[41]  Hongbo Ling,et al.  SanM catalyzes the formation of 4-pyridyl-2-oxo-4-hydroxyisovalerate in nikkomycin biosynthesis by interacting with SanN. , 2007, Biochemical and biophysical research communications.

[42]  Chi‐Huey Wong,et al.  Borate as a Phosphate Ester Mimic in Aldolase‐Catalyzed Reactions: Practical Synthesis of L‐Fructose and L‐Iminocyclitols , 2006 .

[43]  G. Schneider,et al.  Replacement of a Phenylalanine by a Tyrosine in the Active Site Confers Fructose-6-phosphate Aldolase Activity to the Transaldolase of Escherichia coli and Human Origin* , 2008, Journal of Biological Chemistry.

[44]  D. Mink,et al.  Overcoming thermodynamic and kinetic limitations of aldolase-catalyzed reactions by applying multienzymatic dynamic kinetic asymmetric transformations. , 2007, Angewandte Chemie.

[45]  E. Toone,et al.  Characterization and crystal structure of Escherichia coli KDPGal aldolase. , 2008, Bioorganic & medicinal chemistry.

[46]  G. Sprenger,et al.  Fructose-6-phosphate aldolase in organic synthesis: preparation of D-fagomine, N-alkylated derivatives, and preliminary biological assays. , 2006, Organic letters.

[47]  M. D. Benaiges,et al.  Influence of secondary reactions on the synthetic efficiency of DHAP‐aldolases , 2006, Biotechnology and bioengineering.

[48]  D. Hilvert,et al.  The putative Diels-Alderase macrophomate synthase is an efficient aldolase. , 2008, Journal of the American Chemical Society.

[49]  Chi‐Huey Wong,et al.  D-Fructose-6-phosphate aldolase-catalyzed one-pot synthesis of iminocyclitols. , 2007, Journal of the American Chemical Society.

[50]  Hai Yu,et al.  Aldolase-catalyzed synthesis of beta-D-galp-(1-->9)-D-KDN: a novel acceptor for sialyltransferases. , 2006, Organic letters.

[51]  I. Alfonso,et al.  Asymmetric organic synthesis with enzymes , 2008 .

[52]  Yanhong Li,et al.  Pasteurella multocida sialic acid aldolase: a promising biocatalyst , 2008, Applied Microbiology and Biotechnology.

[53]  E. Toone,et al.  Pyruvate aldolases in chiral carbon–carbon bond formation , 2007, Nature Protocols.

[54]  D. Enders,et al.  Asymmetric synthesis with chemical and biological methods , 2007 .

[55]  G. Sprenger,et al.  Fructose-6-phosphate Aldolase Is a Novel Class I Aldolase from Escherichia coli and Is Related to a Novel Group of Bacterial Transaldolases* , 2001, The Journal of Biological Chemistry.

[56]  F. Tanaka,et al.  Antibody‐catalyzed Aldol Reactions , 2008 .

[57]  J. Joglar,et al.  Dihydroxyacetone phosphate aldolase catalyzed synthesis of structurally diverse polyhydroxylated pyrrolidine derivatives and evaluation of their glycosidase inhibitory properties. , 2009, Chemistry.

[58]  Chi-Huey Wong,et al.  Recent advances in aldolase-catalyzed asymmetric synthesis , 2007 .

[59]  J. Reymond,et al.  Artificial aldolases from peptide dendrimer combinatorial libraries. , 2006, Organic & biomolecular chemistry.

[60]  Daniel Mink,et al.  Large-Scale Synthesis of New Pyranoid Building Blocks Based on Aldolase-Catalysed Carbon-Carbon Bond Formation , 2008 .

[61]  Donald Hilvert,et al.  Stereoselectivity and expanded substrate scope of an engineered PLP-dependent aldolase. , 2006, Angewandte Chemie.

[62]  K. Faber,et al.  De-racemization of enantiomers versus de-epimerization of diastereomers--classification of dynamic kinetic asymmetric transformations (DYKAT). , 2008, Chemistry.