Direct Relationship between Protein Expression and Progeny Yield of Herpes Simplex Virus 1 Unveils a Rate-limiting Step for Virus Production

Although viral protein expression and progeny virus production were independently shown to be highly heterogenous in individual cells, their direct relationship, analyzed by considering their heterogeneities, has not been investigated to date. This study established a system to fractionate cells infected with a herpesvirus based on the levels of the global expression of viral late proteins, which are largely virion structural proteins, and to titrate virus yields in these fractions. This system demonstrated a direct relationship and indicated there was a threshold for the levels of viral late protein expression for progeny virus production and that viral DNA cleavage/packaging was a rate-limiting step for progeny virus production. These findings, which were masked in previous studies performed at the entire population level, have uncovered a sophisticated viral strategy for efficient progeny virus production and shed new light on an effective target for the development of anti-viral drugs.

[1]  Andrew Butler,et al.  Influenza virus transcription and progeny production are poorly correlated in single cells , 2023, bioRxiv.

[2]  P. Thibault,et al.  RNA helicase DDX3X modulates herpes simplex virus 1 nuclear egress , 2023, Communications Biology.

[3]  Dongmei Liu,et al.  Development of Robust Varicella Zoster Virus Luciferase Reporter Viruses for In Vivo Monitoring of Virus Growth and Its Antiviral Inhibition in Culture, Skin, and Humanized Mice , 2022, Viruses.

[4]  Y. Kawaguchi,et al.  Role of the Arginine Cluster in the Disordered Domain of Herpes Simplex Virus 1 UL34 for the Recruitment of ESCRT-III for Viral Primary Envelopment , 2021, Journal of virology.

[5]  T. Kanneganti,et al.  AIM2 forms a complex with Pyrin and ZBP1 to drive PANoptosis and host defense , 2021, Nature.

[6]  Yoon Ki Kim,et al.  A high-resolution temporal atlas of the SARS-CoV-2 translatome and transcriptome , 2021, Nature Communications.

[7]  U. Greber,et al.  Virus Infection Variability by Single-Cell Profiling , 2021, Viruses.

[8]  Dharma Rao Tompa,et al.  Trends and strategies to combat viral infections: A review on FDA approved antiviral drugs , 2021, International Journal of Biological Macromolecules.

[9]  S. Kitazume,et al.  Identification of a herpes simplex virus 1 gene encoding neurovirulence factor by chemical proteomics , 2020, Nature Communications.

[10]  J. Haas,et al.  Analysis of Virus and Host Proteomes During Productive HSV-1 and VZV Infection in Human Epithelial Cells , 2020, Frontiers in Microbiology.

[11]  A. Tanay,et al.  A single-cell view on alga-virus interactions reveals sequential transcriptional programs and infection states , 2020, Science Advances.

[12]  M. Landthaler,et al.  Integrative functional genomics decodes herpes simplex virus 1 , 2020, Nature Communications.

[13]  O. Kobiler,et al.  Abortive herpes simplex virus infection of nonneuronal cells results in quiescent viral genomes that can reactivate , 2019, Proceedings of the National Academy of Sciences.

[14]  Y. Kawaguchi,et al.  Identification of the Capsid Binding Site in the Herpes Simplex Virus 1 Nuclear Egress Complex and Its Role in Viral Primary Envelopment and Replication , 2019, Journal of Virology.

[15]  Xuetao Cao,et al.  Nuclear hnRNPA2B1 initiates and amplifies the innate immune response to DNA viruses , 2019, Science.

[16]  S. Tay,et al.  HSV-1 single-cell analysis reveals the activation of anti-viral and developmental programs in distinct sub-populations , 2019, bioRxiv.

[17]  M. Oyama,et al.  Roles of the Phosphorylation of Herpes Simplex Virus 1 UL51 at a Specific Site in Viral Replication and Pathogenicity , 2018, Journal of Virology.

[18]  T. Ichinohe,et al.  Herpes Simplex Virus 1 VP22 Inhibits AIM2-Dependent Inflammasome Activation to Enable Efficient Viral Replication. , 2018, Cell host & microbe.

[19]  M. Imamura,et al.  Characterization of Recombinant Flaviviridae Viruses Possessing a Small Reporter Tag , 2017, Journal of Virology.

[20]  J. Baines,et al.  A Domain of Herpes Simplex Virus pUL33 Required To Release Monomeric Viral Genomes from Cleaved Concatemeric DNA , 2017, Journal of Virology.

[21]  S. Mittal,et al.  Components of Adenovirus Genome Packaging , 2016, Front. Microbiol..

[22]  M. Oyama,et al.  Cellular Transcriptional Coactivator RanBP10 and Herpes Simplex Virus 1 ICP0 Interact and Synergistically Promote Viral Gene Expression and Replication , 2016, Journal of Virology.

[23]  R. Sanjuán,et al.  Single-Cell Analysis of RNA Virus Infection Identifies Multiple Genetically Diverse Viral Genomes within Single Infectious Units , 2015, Cell host & microbe.

[24]  Zhijian J. Chen,et al.  Pivotal Roles of cGAS-cGAMP Signaling in Antiviral Defense and Immune Adjuvant Effects , 2013, Science.

[25]  A. Bowie,et al.  Proteasomal Degradation of Herpes Simplex Virus Capsids in Macrophages Releases DNA to the Cytosol for Recognition by DNA Sensors , 2013, The Journal of Immunology.

[26]  Zhijian J. Chen,et al.  Cyclic GMP-AMP Synthase Is a Cytosolic DNA Sensor That Activates the Type I Interferon Pathway , 2013, Science.

[27]  N. DeLuca,et al.  Nuclear IFI16 induction of IRF-3 signaling during herpesviral infection and degradation of IFI16 by the viral ICP0 protein , 2012, Proceedings of the National Academy of Sciences.

[28]  I. Cristea,et al.  Acetylation modulates cellular distribution and DNA sensing ability of interferon-inducible protein IFI16 , 2012, Proceedings of the National Academy of Sciences.

[29]  John Yin,et al.  Kinetics of virus production from single cells. , 2012, Virology.

[30]  J. Baines Herpes simplex virus capsid assembly and DNA packaging: a present and future antiviral drug target. , 2011, Trends in microbiology.

[31]  J. Baines,et al.  Selection of HSV capsids for envelopment involves interaction between capsid surface components pUL31, pUL17, and pUL25 , 2011, Proceedings of the National Academy of Sciences.

[32]  Joel D. Baines,et al.  Herpesviruses remodel host membranes for virus egress , 2011, Nature Reviews Microbiology.

[33]  Christian Ritz,et al.  Toward a unified approach to dose–response modeling in ecotoxicology , 2010, Environmental toxicology and chemistry.

[34]  Zhijian J. Chen,et al.  RNA Polymerase III Detects Cytosolic DNA and Induces Type I Interferons through the RIG-I Pathway , 2009, Cell.

[35]  John Yin,et al.  Growth of an RNA virus in single cells reveals a broad fitness distribution , 2008, Virology.

[36]  K. Honda,et al.  DAI (DLM-1/ZBP1) is a cytosolic DNA sensor and an activator of innate immune response , 2007, Nature.

[37]  Joachim Goedhart,et al.  Bright monomeric red fluorescent protein with an extended fluorescence lifetime , 2007, Nature Methods.

[38]  Joachim Goedhart,et al.  UvA-DARE ( Digital Academic Repository ) Optimization of fluorescent proteins for novel quantitative multiparameter microscopy approaches , 2007 .

[39]  J. von Einem,et al.  Two-step red-mediated recombination for versatile high-efficiency markerless DNA manipulation in Escherichia coli. , 2006, BioTechniques.

[40]  B. Semler,et al.  Cell-Dependent Role for the Poliovirus 3′ Noncoding Region in Positive-Strand RNA Synthesis , 2004, Journal of Virology.

[41]  A. Davison,et al.  The Herpes Simplex Virus Type 1 UL17 Gene Encodes Virion Tegument Proteins That Are Required for Cleavage and Packaging of Viral DNA , 1998, Journal of Virology.

[42]  C. Van Sant,et al.  Herpes simplex virus 1 alpha regulatory protein ICP0 interacts with and stabilizes the cell cycle regulator cyclin D3 , 1997, Journal of virology.

[43]  F. Homa,et al.  Capsid assembly and DNA packaging in herpes simplex virus , 1997, Reviews in medical virology.

[44]  A. Davison,et al.  The U(L)15 gene of herpes simplex virus type 1 contains within its second exon a novel open reading frame that is translated in frame with the U(L)15 gene product , 1997, Journal of virology.

[45]  A. Davison,et al.  Isolation and characterization of herpes simplex virus type 1 mutants defective in the UL6 gene. , 1996, Virology.

[46]  F. Homa,et al.  Herpes simplex virus type 1 DNA cleavage and encapsidation require the product of the UL28 gene: isolation and characterization of two UL28 deletion mutants , 1993, Journal of virology.

[47]  David M. Knipe,et al.  Formation of DNA replication structures in herpes virus-infected cells requires a viral DNA binding protein , 1988, Cell.

[48]  P. Wildy,et al.  Release of herpes virus from solitary HeLa cells. , 1959, Journal of general microbiology.

[49]  M. DELBRtrCK THE BURST SIZE DISTRIBUTION IN THE GROWTH OF BACTERIAL VIRUSES ( BACTERIOPHAGES ) , 2022 .