Chain Procedures: A Class of Flexible Closed Testing Procedures With Clinical Trial Applications

We define a class of multiple testing procedures for testing a family of hypotheses based on a prespecified or data-driven testing sequence. These procedures, termed chain procedures, are characterized by independent sets of parameters which govern the initial allocation of the overall α level among the null hypotheses of interest and the process for iteratively reallocating available (or unspent) α among the remaining eligible null hypotheses. As a result, chain procedures are more flexible than popular stepwise procedures such as the Holm or fallback procedures. While presenting the broad class of chain procedures, this article focuses on the development of parametric chain procedures for problems with a known joint distribution of the hypothesis test statistics. Chain procedures are closed testing procedures and thus control the familywise error rate in the strong sense. Further, we discuss optimal selection of parameters of chain procedures based on clinically relevant application-specific criteria. Finally, we illustrate application of the chain testing method using a clinical trial example aimed at the development of a tailored therapy.

[1]  H. Keselman,et al.  Multiple Comparison Procedures , 2005 .

[2]  R. Muirhead,et al.  Multiple Co-primary Endpoints: Medical and Statistical Solutions: A Report from the Multiple Endpoints Expert Team of the Pharmaceutical Research and Manufacturers of America , 2007 .

[3]  Umesh D. Naik,et al.  Some selection rules for comparing p processes with a standard , 1975 .

[4]  W. Brannath,et al.  A graphical approach to sequentially rejective multiple test procedures , 2009, Statistics in medicine.

[5]  S. S. Young,et al.  Resampling-Based Multiple Testing: Examples and Methods for p-Value Adjustment , 1993 .

[6]  S. Holm A Simple Sequentially Rejective Multiple Test Procedure , 1979 .

[7]  Alex Dmitrienko,et al.  Design and Analysis Considerations in Clinical Trials With a Sensitive Subpopulation , 2010 .

[8]  Sue-Jane Wang,et al.  Approaches to evaluation of treatment effect in randomized clinical trials with genomic subset , 2007, Pharmaceutical statistics.

[9]  R. Simes,et al.  An improved Bonferroni procedure for multiple tests of significance , 1986 .

[10]  Y. Hochberg A sharper Bonferroni procedure for multiple tests of significance , 1988 .

[11]  Frank Bretz,et al.  Power and sample size when multiple endpoints are considered , 2007, Pharmaceutical statistics.

[12]  P. Westfall,et al.  Optimally weighted, fixed sequence and gatekeeper multiple testing procedures , 2001 .

[13]  B. Wiens,et al.  The Fallback Procedure for Evaluating a Single Family of Hypotheses , 2005, Journal of biopharmaceutical statistics.

[14]  M. Huque,et al.  A flexible fixed-sequence testing method for hierarchically ordered correlated multiple endpoints in clinical trials , 2008 .

[15]  Peter R. Nelson,et al.  Multiple Comparisons: Theory and Methods , 1997 .

[16]  C. Dunnett A Multiple Comparison Procedure for Comparing Several Treatments with a Control , 1955 .

[17]  A. Genz,et al.  Computation of Multivariate Normal and t Probabilities , 2009 .

[18]  Gonzalo Durán Pacheco,et al.  Multiple Testing Problems in Pharmaceutical Statistics , 2009 .

[19]  Yosef Hochberg,et al.  Closed procedures are better and often admit a shortcut , 1999 .

[20]  Alex Dmitrienko,et al.  General Multistage Gatekeeping Procedures , 2008, Biometrical journal. Biometrische Zeitschrift.

[21]  A. Tamhane,et al.  Multiple Comparison Procedures , 1989 .

[22]  O. Guilbaud,et al.  A recycling framework for the construction of Bonferroni‐based multiple tests , 2009, Statistics in medicine.

[23]  V. Durkalski Analysis of Clinical Trials Using SAS®: A Practical Guide , 2006 .

[24]  K. Gabriel,et al.  On closed testing procedures with special reference to ordered analysis of variance , 1976 .

[25]  B. Wiens A fixed sequence Bonferroni procedure for testing multiple endpoints , 2003 .

[26]  P. Westfall,et al.  Gatekeeping strategies for clinical trials that do not require all primary effects to be significant , 2003, Statistics in medicine.

[27]  Alex Dmitrienko,et al.  Analysis of Clinical Trials Using SAS: A Practical Guide , 2005 .

[28]  D. Horvitz,et al.  A Generalization of Sampling Without Replacement from a Finite Universe , 1952 .

[29]  Peter H. Westfall,et al.  Multiple testing methodology , 2009 .

[30]  Y. Benjamini,et al.  Multiple Hypotheses Testing with Weights , 1997 .