Identification and Validation of Urinary Biomarkers for Differential Diagnosis and Evaluation of Therapeutic Intervention in Anti-neutrophil Cytoplasmic Antibody-associated Vasculitis*

Renal activity and smoldering disease is difficult to assess in anti-neutrophil cytoplasmic antibody-associated vasculitis (AAV) because of renal scarring. Even repeated biopsies suffer from sampling errors in this focal disease especially in patients with chronic renal insufficiency. We applied capillary electrophoresis coupled to mass spectrometry toward urine samples from patients with active renal AAV to identify and validate urinary biomarkers that enable differential diagnosis of disease and assessment of disease activity. The data were compared with healthy individuals, patients with other renal and non-renal diseases, and patients with AAV in remission. 113 potential biomarkers were identified that differed significantly between active renal AAV and healthy individuals and patients with other chronic renal diseases. Of these, 58 could be sequenced. Sensitivity and specificity of models based on 18 sequenced biomarkers were validated using blinded urine samples of 40 patients with different renal diseases. Discrimination of AAV from other renal diseases in blinded samples was possible with 90% sensitivity and 86.7–90% specificity depending on the model. 10 patients with active AAV were followed for 6 months after initiation of treatment. Immunosuppressive therapy led to a change of the proteome toward “remission.” 47 biomarkers could be sequenced that underwent significant changes during therapy together with regression of clinical symptoms, normalization of C-reactive protein, and improvement of renal function. Proteomics analysis with capillary electrophoresis-MS represents a promising tool for fast identification of patients with active AAV, indication of renal relapses, and monitoring for ongoing active renal disease and remission without renal biopsy.

[1]  P. Hiemstra,et al.  Proteinase 3, the major autoantigen of Wegener's granulomatosis, enhances IL-8 production by endothelial cells in vitro. , 1996, Journal of the American Society of Nephrology : JASN.

[2]  Joshua J. Coon,et al.  Electron transfer dissociation of peptide anions , 2005, Journal of the American Society for Mass Spectrometry.

[3]  Walter Kolch,et al.  Urinary Proteomic Biomarkers in Coronary Artery Disease*S , 2008, Molecular & Cellular Proteomics.

[4]  H. Parving,et al.  Impact of diabetic nephropathy and angiotensin II receptor blockade on urinary polypeptide patterns. , 2005, Kidney international.

[5]  D. Maahs,et al.  The urinary proteome in diabetes and diabetes‐associated complications: New ways to assess disease progression and evaluate therapy , 2008, Proteomics. Clinical applications.

[6]  Alan R. Dabney BIOINFORMATICS Classification of Microarrays to Nearest Centroids , 2022 .

[7]  Y. Benjamini,et al.  Controlling the false discovery rate: a practical and powerful approach to multiple testing , 1995 .

[8]  M. Daha,et al.  The current status of neutrophil cytoplasmic antibodies. , 1989, Clinical and experimental immunology.

[9]  V. Kliem,et al.  Improvement in long-term renal graft survival due to CMV prophylaxis with oral ganciclovir: results of a randomized clinical trial. , 2008, American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons.

[10]  H. Mischak,et al.  Proteomic patterns established with capillary electrophoresis and mass spectrometry for diagnostic purposes. , 2004, Kidney international.

[11]  Harald Mischak,et al.  Advances in urinary proteome analysis and biomarker discovery. , 2007, Journal of the American Society of Nephrology : JASN.

[12]  D. Schroeder,et al.  Antiproteinase 3 Antineutrophil Cytoplasmic Antibodies and Disease Activity in Wegener Granulomatosis , 2007, Annals of Internal Medicine.

[13]  J. Wieslander,et al.  Increased circulating levels of proteinase 3 in patients with anti‐neutrophilic cytoplasmic autoantibodies‐associated systemic vasculitis in remission , 2003, Clinical and experimental immunology.

[14]  P. Ridker,et al.  Inflammation, aspirin, and the risk of cardiovascular disease in apparently healthy men. , 1997, The New England journal of medicine.

[15]  M. Haubitz,et al.  Circulating endothelial cells as markers for ANCA-associated small-vessel vasculitis , 2003, The Lancet.

[16]  Harald Mischak,et al.  Urine in Clinical Proteomics* , 2008, Molecular & Cellular Proteomics.

[17]  J. M. DeLeo,et al.  Receiver operating characteristic laboratory (ROCLAB): Software for developing decision strategies that account for uncertainty , 1993, 1993 (2nd) International Symposium on Uncertainty Modeling and Analysis.

[18]  E. Ritz,et al.  De novo glomerulonephritis in patients during remission from Wegener's granulomatosis. , 1992, Clinical nephrology.

[19]  R. Moots,et al.  Birmingham Vasculitis Activity Score (BVAS) in systemic necrotizing vasculitis. , 1994, QJM : monthly journal of the Association of Physicians.

[20]  H. Mischak,et al.  Predicting the clinical outcome of congenital unilateral ureteropelvic junction obstruction in newborn by urinary proteome analysis , 2006, Nature Medicine.

[21]  M. Haubitz,et al.  Circulating endothelial cells and vasculitis. , 2004, Internal medicine.

[22]  Walter Kolch,et al.  Discovery of biomarkers in human urine and cerebrospinal fluid by capillary electrophoresis coupled to mass spectrometry: Towards new diagnostic and therapeutic approaches , 2005, Electrophoresis.

[23]  R. Kettritz,et al.  Apoptosis of endothelial cells induced by the neutrophil serine proteases proteinase 3 and elastase. , 1996, The American journal of pathology.

[24]  H. Mischak,et al.  Urine protein patterns can serve as diagnostic tools in patients with IgA nephropathy. , 2005, Kidney international.

[25]  R. Falk,et al.  Pathogenic potential of anti-neutrophil cytoplasmic autoantibodies. , 1994, Advances in experimental medicine and biology.

[26]  J. Shabanowitz,et al.  Peptide and protein sequence analysis by electron transfer dissociation mass spectrometry. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[27]  M. Haubitz,et al.  Complexed plasma elastase as an in vivo marker for leukocyte activation in antineutrophil cytoplasmic antibody-associated vasculitis. , 1997, Arthritis and rheumatism.

[28]  H. Frierson,et al.  Discovery and validation of new protein biomarkers for urothelial cancer: a prospective analysis. , 2006, The Lancet. Oncology.

[29]  R J Falk,et al.  Nomenclature of systemic vasculitides. Proposal of an international consensus conference. , 1994, Arthritis and rheumatism.

[30]  A. Dominiczak,et al.  CE‐MS analysis of the human urinary proteome for biomarker discovery and disease diagnostics , 2008, Proteomics. Clinical applications.

[31]  G. McAlister,et al.  Performance Characteristics of Electron Transfer Dissociation Mass Spectrometry*S , 2007, Molecular & Cellular Proteomics.

[32]  Harald Mischak,et al.  Urinary proteomics in diabetes and CKD. , 2008, Journal of the American Society of Nephrology : JASN.

[33]  D. Mant,et al.  Endothelial and platelet microparticles in vasculitis of the young. , 2004, Arthritis and rheumatism.

[34]  Thorsten Kaiser,et al.  Determination of peptides and proteins in human urine with capillary electrophoresis-mass spectrometry, a suitable tool for the establishment of new diagnostic markers. , 2003, Journal of chromatography. A.

[35]  H. Mischak,et al.  High‐resolution proteome/peptidome analysis of peptides and low‐molecular‐weight proteins in urine , 2007, Proteomics. Clinical applications.

[36]  H. Mischak,et al.  Quantitative urinary proteome analysis for biomarker evaluation in chronic kidney disease. , 2009, Journal of proteome research.

[37]  W. Kolch,et al.  Mass spectrometry for the detection of differentially expressed proteins: a comparison of surface-enhanced laser desorption/ionization and capillary electrophoresis/mass spectrometry. , 2004, Rapid communications in mass spectrometry : RCM.

[38]  E. Csernok,et al.  ANCA and associated diseases: immunodiagnostic and pathogenetic aspects , 1993, Clinical and experimental immunology.

[39]  R. Falk,et al.  Prognostic markers in patients with antineutrophil cytoplasmic autoantibody-associated microscopic polyangiitis and glomerulonephritis. , 1996, Journal of the American Society of Nephrology : JASN.

[40]  W. Gross,et al.  Distribution of the granulocyte serine proteinases proteinase 3 and elastase in human glomerulonephritis. , 1995, American journal of kidney diseases : the official journal of the National Kidney Foundation.

[41]  F. Scolari,et al.  Repetitive Fragmentation Products of Albumin and α1-Antitrypsin in Glomerular Diseases Associated with Nephrotic Syndrome , 2006 .

[42]  H. Mischak,et al.  Electrophoretic methods for analysis of urinary polypeptides in IgA‐associated renal diseases , 2007, Electrophoresis.

[43]  Ylva Bengtsson,et al.  A Swollen Neck , 2005, Clinical pediatrics.

[44]  R. Tibshirani,et al.  Diagnosis of multiple cancer types by shrunken centroids of gene expression , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[45]  M. Haubitz,et al.  Endothelial tissue factor stimulation by proteinase 3 and elastase , 2001, Clinical and experimental immunology.

[46]  H. Mischak,et al.  Biomarker discovery by CE‐MS enables sequence analysis via MS/MS with platform‐independent separation , 2006, Electrophoresis.