Reaction-Diffusion Model as a Framework for Understanding Biological Pattern Formation

Turing Model Explained The reaction-diffusion (Turing) model is a theoretical model used to explain self-regulated pattern formation in biology. Although many biologists have heard of this model, a better understanding of the concept would aid its application to many research projects and developmental principles. Kondo and Miura (p. 1616) now review the reaction-diffusion model. Despite the associated mathematics, the basic idea of the Turing model is relatively easy to understand and relates to morphogen gradients. In addition, user-friendly software makes it easy to understand how a whole variety of patterns can be produced by this simple mechanism. The Turing, or reaction-diffusion (RD), model is one of the best-known theoretical models used to explain self-regulated pattern formation in the developing animal embryo. Although its real-world relevance was long debated, a number of compelling examples have gradually alleviated much of the skepticism surrounding the model. The RD model can generate a wide variety of spatial patterns, and mathematical studies have revealed the kinds of interactions required for each, giving this model the potential for application as an experimental working hypothesis in a wide variety of morphological phenomena. In this review, we describe the essence of this theory for experimental biologists unfamiliar with the model, using examples from experimental studies in which the RD model is effectively incorporated.

[1]  A. M. Turing,et al.  The chemical basis of morphogenesis , 1952, Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences.

[2]  W. Bialek,et al.  Probing the Limits to Positional Information , 2007, Cell.

[3]  Stephen L. Johnson,et al.  Mutations in connexin43 (GJA1) perturb bone growth in zebrafish fins. , 2005, Developmental biology.

[4]  Masaru Ishii,et al.  Spot pattern of leopard Danio is caused by mutation in the zebrafish connexin41.8 gene , 2006, EMBO reports.

[5]  J. Bard,et al.  How well does Turing's theory of morphogenesis work? , 1974, Journal of theoretical biology.

[6]  H. Meinhardt,et al.  Pattern formation by local self-activation and lateral inhibition. , 2000, BioEssays : news and reviews in molecular, cellular and developmental biology.

[7]  H L Frisch,et al.  Dynamics of skeletal pattern formation in developing chick limb. , 1979, Science.

[8]  K. Shiota,et al.  TGFβ2 acts as an “Activator” molecule in reaction‐diffusion model and is involved in cell sorting phenomenon in mouse limb micromass culture , 2000, Developmental dynamics : an official publication of the American Association of Anatomists.

[9]  Robert Michael Kirby,et al.  Advanced Reaction-Diffusion Models for Texture Synthesis , 2006, J. Graph. Tools.

[10]  Ruth E. Baker,et al.  Cyclic dermal BMP signalling regulates stem cell activation during hair regeneration , 2008, Nature.

[11]  David Warburton,et al.  Dickkopf-1 (DKK1) reveals that fibronectin is a major target of Wnt signaling in branching morphogenesis of the mouse embryonic lung. , 2005, Developmental biology.

[12]  Philip K Maini,et al.  Periodic pattern formation in reaction—diffusion systems: An introduction for numerical simulation , 2004, Anatomical science international.

[13]  Shigeru Kondo,et al.  Interactions between zebrafish pigment cells responsible for the generation of Turing patterns , 2009, Proceedings of the National Academy of Sciences.

[14]  Eric A Sobie,et al.  Calcium Biology of the Transverse Tubules in Heart , 2005, Annals of the New York Academy of Sciences.

[15]  C V Cabrera,et al.  Lateral inhibition and cell fate during neurogenesis in Drosophila: the interactions between scute, Notch and Delta. , 1990, Development.

[16]  Hans Meinhardt,et al.  Molecular evidence for an activator-inhibitor mechanism in development of embryonic feather branching. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[17]  Rainer Kiko,et al.  Dickkopf related genes are components of the positional value gradient in Hydra. , 2006, Developmental biology.

[18]  M. Millonas,et al.  The role of trans-membrane signal transduction in turing-type cellular pattern formation. , 2004, Journal of theoretical biology.

[19]  C J Weijer,et al.  Propagating chemoattractant waves coordinate periodic cell movement in Dictyostelium slugs. , 2001, Development.

[20]  P K Maini,et al.  Bifurcating spatially heterogeneous solutions in a chemotaxis model for biological pattern generation. , 1991, Bulletin of mathematical biology.

[21]  H. Meinhardt Models of biological pattern formation , 1982 .

[22]  Cheng-Ming Chuong Limb pattern, physical mechanisms and morphological evolution - an interview with Stuart A. Newman , 2009 .

[23]  R. Dumollard,et al.  Calcium waves and oscillations in eggs. , 1998, Biophysical chemistry.

[24]  Hiroshi Hamada,et al.  Generation of robust left-right asymmetry in the mouse embryo requires a self-enhancement and lateral-inhibition system. , 2006, Developmental cell.

[25]  E A Gaffney,et al.  Gene Expression Time Delays and Turing Pattern Formation Systems , 2006, Bulletin of mathematical biology.

[26]  J. Timmer,et al.  Supporting Online Material Material and Methods , 2022 .

[27]  N. Swindale A model for the formation of ocular dominance stripes , 1980, Proceedings of the Royal Society of London. Series B. Biological Sciences.

[28]  H. Meinhardt,et al.  Applications of a theory of biological pattern formation based on lateral inhibition. , 1974, Journal of cell science.

[29]  Rihito Asaia,et al.  PII: S0925-4773(99)00211-7 , 1999 .

[30]  L Wolpert,et al.  Local inhibitory action of BMPs and their relationships with activators in feather formation: implications for periodic patterning. , 1998, Developmental biology.

[31]  F. Bruggeman,et al.  Introduction to systems biology. , 2007, EXS.

[32]  Lewis Wolpert,et al.  Principles of Development , 1997 .

[33]  C. Wright,et al.  Activin- and Nodal-related factors control antero–posterior patterning of the zebrafish embryo , 2000, Nature.

[34]  Shigeru Kondo,et al.  Pattern regulation in the stripe of zebrafish suggests an underlying dynamic and autonomous mechanism , 2007, Proceedings of the National Academy of Sciences.

[35]  H. Ueda,et al.  Systems biology of mammalian circadian clocks. , 2007, Cold Spring Harbor symposia on quantitative biology.

[36]  Julian Lewis Autoinhibition with Transcriptional Delay A Simple Mechanism for the Zebrafish Somitogenesis Oscillator , 2003, Current Biology.

[37]  G F Oster,et al.  A mechanical model for mesenchymal morphogenesis , 1983, Journal of mathematical biology.

[38]  David M Parichy Animal pigment pattern: an integrative model system for studying the development, evolution, and regeneration of form. , 2009, Seminars in cell & developmental biology.

[39]  M. Elowitz,et al.  Reconstruction of genetic circuits , 2005, Nature.

[40]  Robert M. May,et al.  Simple mathematical models with very complicated dynamics , 1976, Nature.