Inferring population history with DIY ABC: a user-friendly approach to approximate Bayesian computation
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Jean-Marie Cornuet | Jean-Michel Marin | Christian P. Robert | Arnaud Estoup | David J. Balding | Filipe Santos | Mark A. Beaumont | Thomas Guillemaud | C. Robert | D. Balding | J. Marin | M. Beaumont | J. Cornuet | Filipe Santos | A. Estoup | T. Guillemaud
[1] B. Rannala,et al. Detecting immigration by using multilocus genotypes. , 1997, Proceedings of the National Academy of Sciences of the United States of America.
[2] Arnaud Estoup,et al. Homoplasy and mutation model at microsatellite loci and their consequences for population genetics analysis , 2002, Molecular ecology.
[3] L. Excoffier,et al. Efficient Approximate Bayesian Computation Coupled With Markov Chain Monte Carlo Without Likelihood , 2009, Genetics.
[4] Cécile Fizames,et al. A comprehensive genetic map of the human genome based on 5,264 microsatellites , 1996, Nature.
[5] Ross Ihaka,et al. Gentleman R: R: A language for data analysis and graphics , 1996 .
[6] M. Feldman,et al. Population growth of human Y chromosomes: a study of Y chromosome microsatellites. , 1999, Molecular biology and evolution.
[7] M. De Iorio,et al. Importance sampling on coalescent histories. II: Subdivided population models , 2004, Advances in Applied Probability.
[8] Jinliang Wang. Maximum-likelihood estimation of admixture proportions from genetic data. , 2003, Genetics.
[9] Arnaud Estoup,et al. Multiple Transatlantic Introductions of the Western Corn Rootworm , 2005, Science.
[10] Motoo Kimura,et al. A model of mutation appropriate to estimate the number of electrophoretically detectable alleles in a finite population*. , 1973, Genetical research.
[11] M W Feldman,et al. An evaluation of genetic distances for use with microsatellite loci. , 1994, Genetics.
[12] R. Nielsen,et al. Multilocus Methods for Estimating Population Sizes, Migration Rates and Divergence Time, With Applications to the Divergence of Drosophila pseudoobscura and D. persimilis , 2004, Genetics.
[13] A. von Haeseler,et al. Inference of population history using a likelihood approach. , 1998, Genetics.
[14] L. Excoffier,et al. Inferring admixture proportions from molecular data. , 1998, Molecular biology and evolution.
[15] Mark A. Beaumont,et al. Joint determination of topology, divergence time, and immigration in population trees , 2008 .
[16] François Rousset,et al. GENEPOP (version 1.2): population genetic software for exact tests and ecumenicism , 1995 .
[17] Arnaud Estoup,et al. Genetic consequences of sequential founder events by an island-colonizing bird , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[18] P. Donnelly,et al. Inferring coalescence times from DNA sequence data. , 1997, Genetics.
[19] Jean-Marie Cornuet,et al. GENETIC ANALYSIS OF COMPLEX DEMOGRAPHIC SCENARIOS: SPATIALLY EXPANDING POPULATIONS OF THE CANE TOAD, BUFO MARINUS , 2004, Evolution; international journal of organic evolution.
[20] Laurent Excoffier,et al. SIMCOAL 2.0: a program to simulate genomic diversity over large recombining regions in a subdivided population with a complex history , 2004, Bioinform..
[21] M. Beaumont. Detecting population expansion and decline using microsatellites. , 1999, Genetics.
[22] M. Nordborg,et al. Coalescent Theory , 2019, Handbook of Statistical Genomics.
[23] M. Nei. Molecular Evolutionary Genetics , 1987 .
[24] A. Estoup,et al. Bayesian inferences on the recent island colonization history by the bird Zosterops lateralis lateralis , 2003, Molecular ecology.
[25] R. Chakraborty,et al. Simultaneous estimation of all the parameters of a stepwise mutation model. , 1998, Genetics.
[26] David J. Balding,et al. Inferences from DNA data: population histories, evolutionary processes and forensic match probabilities , 2003 .
[27] L. Jin,et al. A unified approach to study hypervariable polymorphisms: statistical considerations of determining relatedness and population distances. , 1993, EXS.
[28] R. Huey,et al. Introduction history of Drosophila subobscura in the New World: a microsatellite‐based survey using ABC methods , 2007, Molecular ecology.
[29] Jean-Marie Cornuet,et al. Bayesian Analysis of an Admixture Model With Mutations and Arbitrarily Linked Markers , 2005, Genetics.
[30] L. Excoffier,et al. Statistical evaluation of alternative models of human evolution , 2007, Proceedings of the National Academy of Sciences.
[31] J. Garza,et al. Detection of reduction in population size using data from microsatellite loci , 2001, Molecular ecology.
[32] Paul Marjoram,et al. Markov chain Monte Carlo without likelihoods , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[33] P. Donnelly,et al. Inference in molecular population genetics , 2000 .
[34] J. Cornuet,et al. Hybrid origins of honeybees from Italy (Apis mellifera ligustica) and Sicily (A. m. sicula) , 2000, Molecular ecology.
[35] Shuichi Matsumura,et al. Simulations, Genetics and Human Prehistory , 2008 .
[36] D. Balding,et al. Approximate Bayesian computation in population genetics. , 2002, Genetics.
[37] Mark A. Beaumont,et al. Microsatellite analysis of genetic diversity in fragmented South African buffalo populations , 1998 .
[38] M. Beaumont. Estimation of population growth or decline in genetically monitored populations. , 2003, Genetics.
[39] B. Weir,et al. ESTIMATING F‐STATISTICS FOR THE ANALYSIS OF POPULATION STRUCTURE , 1984, Evolution; international journal of organic evolution.
[40] D. Balding,et al. Handbook of statistical genetics , 2004 .
[41] J. Cornuet,et al. Estimating admixture proportions with microsatellites: comparison of methods based on simulated data , 2004, Molecular ecology.
[42] Laurent Excoffier,et al. Molecular analysis reveals tighter social regulation of immigration in patrilocal populations than in matrilocal populations. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[43] Michael J. Hickerson,et al. msBayes: Pipeline for testing comparative phylogeographic histories using hierarchical approximate Bayesian computation , 2007, BMC Bioinformatics.
[44] C.. Simulating Probability Distributions in the Coalescent * , 2022 .