A theoretical study of electronic factors affecting hydroxylation by model ferryl complexes of cytochrome P-450 and horseradish peroxidase

Density functional theory (DFT) is used to study model ferryl species of cytochrome P-450 and horseradish peroxidase (HRP), as well as of the product complex due to oxidation of H2 by the P-450 species (1–4 and 7). The ferryl species studied include neutral and cation radical states of the porphyrin, as well as high- and low-spin situations. A few issues are addressed concerning the mechanism of alkane hydroxylation, and theoretical support is provided for: (i) the contention that spin inversion occurs along the reaction path, (ii) that the cation radical state of the porphyrin is an essential feature required to accommodate an excess electron from the ferryl moiety and thereby stabilize the ground state of the hydroxylation product, and (iii) that the donor property of the proximal ligand has a significant influence on the energy of the ferryl-to-ring charge-transfer states which are essential to convert the reactant state to the hydroxylation product state. In this sense, our study sheds some light on the difference between the oxidized and reduced HRP forms, HRP(I) and HRP(II), and suggests that the combination of a cation radical porphyrin state and a good π-donor proximal ligand like thiolate, could be the underlying reason for the potent hydroxylation ability of the P-450 ferryl-complex.

[1]  S. Shaik,et al.  Application of spin-restricted open-shell Kohn-Sham method to atomic and molecular multiplet states , 1999 .

[2]  M. J. Coon,et al.  Two distinct electrophilic oxidants effects hydroxylation in cytochrome P-450-catalyzed reactions [20] , 1998 .

[3]  S. Shaik,et al.  Spin-restricted density functional approach to the open-shell problem , 1998 .

[4]  S. Shaik,et al.  Theoretical Investigation of Two-State-Reactivity Pathways of H−H Activation by FeO+: Addition−Elimination, “Rebound”, and Oxene-Insertion Mechanisms , 1998 .

[5]  Kazunari Yoshizawa,et al.  Methane−Methanol Conversion by MnO+, FeO+, and CoO+: A Theoretical Study of Catalytic Selectivity , 1998 .

[6]  Allis S. Chien,et al.  An Agostic Alternative to the P-450 Rebound Mechanism , 1998 .

[7]  D. Case,et al.  Density Functional Study on the Electronic Structures of Model Peroxidase Compounds I and II , 1997 .

[8]  H. Güdel,et al.  Excited-state energies and distortions of d0 transition metal tetraoxo complexes: A density functional study , 1997 .

[9]  Walter Thiel,et al.  A new gradient-corrected exchange-correlation density functional , 1997 .

[10]  D. Bandyopadhyay,et al.  OXENE VERSUS NON-OXENE REACTIVE INTERMEDIATES IN IRON(III) PORPHYRIN CATALYZED OXIDATION REACTIONS: ORGANOMETALLIC COMPOUNDS AS DIAGNOSTIC PROBES , 1997 .

[11]  D. E. Benson,et al.  Resonance Raman investigations of cytochrome P450(cam) complexed with putidaredoxin , 1997 .

[12]  C. Daul,et al.  On the Calculation of Multiplets , 1997 .

[13]  M. Grodzicki,et al.  LOCAL DENSITY FUNCTIONAL STUDY OF OXOIRON(IV) PORPHYRIN COMPLEXES AND THEIR ONE-ELECTRON OXIDIZED DERIVATIVES. AXIAL LIGAND EFFECTS , 1997 .

[14]  H. Wagenknecht,et al.  New Active‐Site Analogues of Chloraperoxidase—Syntheses and Catalytic Reactions , 1997 .

[15]  J. Neergaard,et al.  Optically Active Amines. 41.1 Application of the Benzene Chirality Rule to Chiral Ring-Substituted Benzylcarbinamines and Benzylcarbinamine Salts , 1997 .

[16]  C. Daul,et al.  A density functional study of ground‐state and excited‐state properties of CoAl2Cl8(g) , 1997 .

[17]  Zeev Gross,et al.  Iron porphyrin catalyzed hydroxylation of ethylbenzene by ozone , 1996 .

[18]  J. Dawson,et al.  Heme-Containing Oxygenases. , 1996, Chemical reviews.

[19]  M. Dupuis,et al.  Structure of a Model Transient Peroxide Intermediate of Peroxidases by ab Initio Methods , 1996 .

[20]  Ovchinnikov,et al.  Simple spin correction of unrestricted density-functional calculation. , 1996, Physical review. A, Atomic, molecular, and optical physics.

[21]  H. Güdel,et al.  Excited state properties of Cr3+ in Cs2NaYCl6 and Cs2NaYBr6: A density functional study , 1996 .

[22]  Zeev Gross,et al.  Direct Resonance Raman Evidence for a Trans Influence on the Ferryl Fragment in Models of Compound I Intermediates of Heme Enzymes , 1996 .

[23]  M. Newcomb,et al.  A nonsynchronous concerted mechanism for cytochrome P-450 catalyzed hydroxylation , 1995 .

[24]  C. Cramer,et al.  Density functional theory: excited states and spin annihilation , 1995 .

[25]  Helmut Schwarz,et al.  CH and CC Bond Activation by Bare Transition‐Metal Oxide Cations in the Gas Phase , 1995 .

[26]  S. Shaik,et al.  Two‐State Reactivity in Organometallic Gas‐Phase Ion Chemistry , 1995 .

[27]  D. Goldfarb,et al.  Evidence for Water Binding to the Fe Center in Cytochrome P450cam Obtained by 17O Electron Spin-Echo Envelope Modulation Spectroscopy , 1995 .

[28]  T. Poulos,et al.  CRYSTAL STRUCTURE OF CYTOCHROME P450CAM COMPLEXED WITH ITS CATALYTIC PRODUCT, 5-EXO-HYDROXYCAMPHOR , 1995 .

[29]  Walter Thiel,et al.  Theoretical study of the vibrational spectra of the transition metal carbonyls M(CO)6 [M=Cr, Mo, W], M(CO)5 [M=Fe, Ru, Os], and M(CO)4 [M=Ni, Pd, Pt] , 1995 .

[30]  K. Hodgson,et al.  X-ray Absorption Near Edge Studies of Cytochrome P-450-CAM, Chloroperoxidase, and Myoglobin , 1995, The Journal of Biological Chemistry.

[31]  D. Putt,et al.  AN INCREDIBLY FAST APPARENT OXYGEN REBOUND RATE CONSTANT FOR HYDROCARBON HYDROXYLATION BY CYTOCHROME P-450 ENZYMES , 1995 .

[32]  L. Pettersson,et al.  On the accuracy of gradient corrected density functional methods for transition metal complexes , 1995 .

[33]  C. Daul DENSITY FUNCTIONAL THEORY APPLIED TO THE EXCITED STATES OF COORDINATION COMPOUNDS , 1994 .

[34]  S. Shaik,et al.  Electronic Structures and Gas-Phase Reactivities of Cationic Late-Transition-Metal Oxides , 1994 .

[35]  A. Fabiano,et al.  "Redox Tautomerism" in High-Valent Metal-oxo-aquo Complexes. Origin of the Oxygen Atom in Epoxidation Reactions Catalyzed by Water-Soluble Metalloporphyrins , 1994 .

[36]  John T. Groves,et al.  Preparation and Reactivity of Oxoiron(IV) Porphyrins , 1994 .

[37]  Farooq A. Khan,et al.  State-Specific Reactions of Fe+(a6D,a4F) with D2O and Reactions of FeO+ with D2 , 1994 .

[38]  Zeev Gross,et al.  A Pronounced Axial Ligand Effect on the Reactivity of Oxoiron(IV) Porphyrin Cation Radicals , 1994 .

[39]  J. Almlöf,et al.  Density functional theoretical study of oxo(porphyrinato)iron(IV) complexes, models of peroxidase compounds I and II , 1994 .

[40]  Jeffrey P. Jones,et al.  On isotope effects for the cytochrome P-450 oxidation of substituted N,N-dimethylanilines , 1993 .

[41]  B. Meunier Metalloporphyrins as versatile catalysts for oxidation reactions and oxidative DNA cleavage , 1992 .

[42]  Dennis R. Salahub,et al.  Optimization of Gaussian-type basis sets for local spin density functional calculations. Part I. Boron through neon, optimization technique and validation , 1992 .

[43]  T. Ziegler Approximate Density Functional Theory as a Practical Tool in Molecular Energetics and Dynamics , 1991 .

[44]  K. Rypdal,et al.  The methyl group geometry in trichloromethyltitanium: a reinvestigation by gas electron diffraction , 1989 .

[45]  A. Becke,et al.  Density-functional exchange-energy approximation with correct asymptotic behavior. , 1988, Physical review. A, General physics.

[46]  J. Dawson,et al.  Probing structure-function relations in heme-containing oxygenases and peroxidases. , 1988, Science.

[47]  Shigeyoshi Yamamoto,et al.  Ab initio RHF and CASSCF studies on Fe–O bond in high‐valent iron‐oxo‐porphyrins , 1988 .

[48]  H. Fretz,et al.  Synthetic Models of the Active Site of Cytochrome P-450. 1st Communication. The Synthesis of a Doubly-Bridged Iron(II)-Porphyrin Carrying a Tightly Bound Thiolate Ligand† , 1987 .

[49]  J. Perdew,et al.  Density-functional approximation for the correlation energy of the inhomogeneous electron gas. , 1986, Physical review. B, Condensed matter.

[50]  Warren J. Hehre,et al.  AB INITIO Molecular Orbital Theory , 1986 .

[51]  J. Groves Key elements of the chemistry of cytochrome P-450: The oxygen rebound mechanism , 1985 .

[52]  R. Hoffmann,et al.  Metalloporphyrins with unusual geometries. 2. Slipped and skewed bimetallic structures, carbene and oxo complexes, and insertions into metal-porphyrin bonds , 1981 .

[53]  L. K. Hanson,et al.  Electron pathways in catalase and peroxidase enzymic catalysis. Metal and macrocycle oxidations of iron porphyrins and chlorins , 1981 .

[54]  J D Lipscomb,et al.  Electron paramagnetic resonance detectable states of cytochrome P-450cam. , 1980, Biochemistry.

[55]  U. V. Barth,et al.  Local-density theory of multiplet structure , 1979 .

[56]  G. Loew,et al.  Active site models of horseradish peroxidase compound I and a cytochrome P-450 analogue: electronic structure and electric field gradients. , 1977, Journal of the American Chemical Society.

[57]  H. Eyring,et al.  The Structure of Substituted Ethylenes and Their Isomerization Polymerization and , 1942 .