Detection of bursts in neuronal spike trains by the mean inter-spike interval method

Abstract Bursts are electrical spikes firing with a high frequency, which are the most important property in synaptic plasticity and information processing in the central nervous system. However, bursts are difficult to identify because bursting activities or patterns vary with physiological conditions or external stimuli. In this paper, a simple method automatically to detect bursts in spike trains is described. This method auto-adaptively sets a parameter (mean inter-spike interval) according to intrinsic properties of the detected burst spike trains, without any arbitrary choices or any operator judgment. When the mean value of several successive inter-spike intervals is not larger than the parameter, a burst is identified. By this method, bursts can be automatically extracted from different bursting patterns of cultured neurons on multi-electrode arrays, as accurately as by visual inspection. Furthermore, significant changes of burst variables caused by electrical stimulus have been found in spontaneous activity of neuronal network. These suggest that the mean inter-spike interval method is robust for detecting changes in burst patterns and characteristics induced by environmental alterations.

[1]  Frank C. Hoppensteadt,et al.  Bursts as a unit of neural information: selective communication via resonance , 2003, Trends in Neurosciences.

[2]  Junfang Wu,et al.  AN ANALYSIS OF NEURAL INFORMATION WITHIN ELECTROGENIC HIPPOCAMPAL EPILEPTIC NETWORK IN RATS , 2006 .

[3]  Fabrizio Gabbiani,et al.  Burst firing in sensory systems , 2004, Nature Reviews Neuroscience.

[4]  Lon Turnbull,et al.  The string method of burst identification in neuronal spike trains , 2005, Journal of Neuroscience Methods.

[5]  J. Vitek,et al.  Burst and oscillation as disparate neuronal properties , 1996, Journal of Neuroscience Methods.

[6]  Shaoqun Zeng,et al.  Dynamics of learning in cultured neuronal networks with antagonists of glutamate receptors. , 2007, Biophysical journal.

[7]  A. J. Dekhuijzen,et al.  Analysis of neural bursting: nonrhythmic and rhythmic activity in isolated spinal cord , 1996, Journal of Neuroscience Methods.

[8]  F. Delcomyn,et al.  Identification of bursts in spike trains , 1992, Journal of Neuroscience Methods.

[9]  M. Chiappalone,et al.  Networks of neurons coupled to microelectrode arrays: a neuronal sensory system for pharmacological applications. , 2003, Biosensors & bioelectronics.

[10]  Shaoqun Zeng,et al.  The origin of spontaneous synchronized burst in cultured neuronal networks based on multi-electrode arrays. , 2006, Bio Systems.

[11]  Wim L. C. Rutten,et al.  Long-term characterization of firing dynamics of spontaneous bursts in cultured neural networks , 2004, IEEE Transactions on Biomedical Engineering.

[12]  J. Lisman Bursts as a unit of neural information: making unreliable synapses reliable , 1997, Trends in Neurosciences.

[13]  Alessandro Vato,et al.  Burst detection algorithms for the analysis of spatio-temporal patterns in cortical networks of neurons , 2005, Neurocomputing.

[14]  David C. Tam An alternate burst analysis for detecting intra-burst firings based on inter-burst periods , 2002, Neurocomputing.

[15]  Luo Qingming,et al.  Firing patterns of long-term cultured neuronal network on multi-electrode array , 2006 .

[16]  R W RODIECK,et al.  Some quantitative methods for the study of spontaneous activity of single neurons. , 1962, Biophysical journal.

[17]  C. Legéndy,et al.  Bursts and recurrences of bursts in the spike trains of spontaneously active striate cortex neurons. , 1985, Journal of neurophysiology.

[18]  M S Lewicki,et al.  A review of methods for spike sorting: the detection and classification of neural action potentials. , 1998, Network.

[19]  G. Buzsáki,et al.  Temporal Interaction between Single Spikes and Complex Spike Bursts in Hippocampal Pyramidal Cells , 2001, Neuron.