Designed multiple ligands: an emerging anti-HIV drug discovery paradigm.

Currently, the effect of AIDS single-target chemotherapy is severely compromised by the quick emergence of resistant HIV strains. Highly active antiretroviral therapy (HAART) combines HIV reverse transcriptase inhibitors with protease inhibitors or integrase inhibitors, and successfully suppresses HIV viral load to an undetectable level, dramatically improving the life quality of AIDS patients. However, the benefits of this approach are often compromised by poor patient compliance. Recently, there has been a move toward multicomponent drugs whereby two or more agents are coformulated in a single tablet to make dosing regimes simpler and thereby to improve patient compliance, but there are significant risks involved in the development of multicomponent drugs. Designed multiple ligands (DMLs) therapy as an emerging anti-HIV drug discovery paradigm, using a single entity to inhibit multitargets could yield improved patient compliance, thus reducing the likelihood of drug resistance. The exploration of such multifunctional ligands has proven valuable for anti-HIV leads discovery. However, presently many multifunctional scaffolds were first discovered by serendipity or screening; rational design by combining existing monofunctional scaffolds remains an enormous challenge. A key issue in the design of multiple ligands is attaining a balanced activity at each target of interest while simultaneously achieving a wider selectivity and a suitable pharmacokinetic profile. This review of literature examples introduce numerous attractive lead compounds, capable of interfering with different stages of HIV infection and AIDS pathogenesis, which reveals trends and insights that might provide valuable clues for novel anti-HIV drug design and help medicinal chemists discover the next generation of multiple ligands.

[1]  Jaroslav Koča,et al.  Conformations of Flanking Bases in HIV-1 RNA DIS Kissing Complexes Studied by Molecular Dynamics , 2007, Biophysical journal.

[2]  B. Rosenwirth,et al.  Mode of action of SDZ NIM 811, a nonimmunosuppressive cyclosporin A analog with activity against human immunodeficiency virus (HIV) type 1: interference with HIV protein-cyclophilin A interactions , 1995, Journal of virology.

[3]  Y. Kiso,et al.  A new class of anti-HIV agents: synthesis and activity of conjugates of HIV protease inhibitors with a reverse transcriptase inhibitor. , 1999, Bioorganic & medicinal chemistry letters.

[4]  T R Burke,et al.  Antiretroviral agents as inhibitors of both human immunodeficiency virus type 1 integrase and protease. , 1996, Journal of medicinal chemistry.

[5]  E. De Clercq,et al.  New anti-HIV agents and targets. , 2002, Medicinal research reviews.

[6]  K. Lee,et al.  Recent progress in the development of coumarin derivatives as potent anti‐HIV agents , 2003, Medicinal research reviews.

[7]  E. De Clercq,et al.  Correlation of anti-HIV activity with anion spacing in a series of cosalane analogues with extended polycarboxylate pharmacophores. , 2001, Journal of medicinal chemistry.

[8]  N. Neamati A small-molecule antagonist of virion assembly , 2001, Expert opinion on investigational drugs.

[9]  A. Aubertin,et al.  SYNTHESIS AND ANTI-HIV ACTIVITY OF [D4U]-[TROVIRDINE ANALOGUE] AND [D4T]-[TROVIRDINE ANALOGUE] HETERODIMERS AS INHIBITORS OF HIV-1 REVERSE TRANSCRIPTASE , 2002, Nucleosides, nucleotides & nucleic acids.

[10]  N. Sluis-Cremer,et al.  Inhibitors of HIV-1 reverse transcriptase. , 2000, Advances in pharmacology.

[11]  K. Sano,et al.  Design, synthesis, and biological evaluation of anti-HIV double-drugs. conjugates of HIV protease inhibitors with a reverse transcriptase inhibitor through spontaneously cleavable linkers. , 2001, Bioorganic & medicinal chemistry.

[12]  S. Dubey,et al.  Development of integrase inhibitors for treatment of AIDS: an overview. , 2007, European journal of medicinal chemistry.

[13]  Myriam Witvrouw,et al.  New Class of HIV Integrase Inhibitors that Block Viral Replication in Cell Culture , 2002, Current Biology.

[14]  Richard Morphy,et al.  From magic bullets to designed multiple ligands. , 2004, Drug discovery today.

[15]  V. Nair,et al.  HIV integrase inhibitors as therapeutic agents in AIDS , 2007, Reviews in medical virology.

[16]  E. De Clercq,et al.  The regulation of HIV‐1 transcription: Molecular targets for chemotherapeutic intervention , 2006, Medicinal research reviews.

[17]  E. De Clercq,et al.  Potential multifunctional inhibitors of HIV-1 reverse transcriptase. Novel [AZT]-[TSAO-T] and [d4T]-[TSAO-T] heterodimers modified in the linker and in the dideoxynucleoside region. , 1999, Journal of Medicinal Chemistry.

[18]  B. Wolff,et al.  Mode of action of SDZ NIM 811, a nonimmunosuppressive cyclosporin A analog with activity against human immunodeficiency virus type 1 (HIV-1): interference with early and late events in HIV-1 replication , 1995, Journal of virology.

[19]  M. Hattori,et al.  Inhibition of HIV-1 protease and RNase H of HIV-1 reverse transcriptase activities by long chain phenols from the sarcotestas of Ginkgo biloba. , 2008, Planta medica.

[20]  Christopher M. Bailey,et al.  [d4U]-butyne-[HI-236] as a non-cleavable, bifunctional NRTI/NNRTI HIV-1 reverse-transcriptase inhibitor. , 2007, Bioorganic & medicinal chemistry letters.

[21]  A. Otaka,et al.  Synthesis and evaluation of bifunctional anti-HIV agents based on specific CXCR4 antagonists-AZT conjugation. , 2001, Bioorganic & medicinal chemistry.

[22]  J. Chermann,et al.  New bicyclam-AZT conjugates: design, synthesis, anti-HIV evaluation, and their interaction with CXCR-4 coreceptor. , 1999, Journal of medicinal chemistry.

[23]  G. L. Kenyon,et al.  Novel Mechanism of Inhibition of HIV-1 Reverse Transcriptase by a New Non-nucleoside Analog, KM-1* , 2004, Journal of Biological Chemistry.

[24]  N. Sluis-Cremer,et al.  Destabilization of the HIV-1 reverse transcriptase dimer upon interaction with N-acyl hydrazone inhibitors. , 2002, Molecular pharmacology.

[25]  Philippe Cotelle,et al.  Patented HIV-1 integrase inhibitors (1998-2005). , 2006, Recent patents on anti-infective drug discovery.

[26]  L. Bedoya,et al.  4-Phenylcoumarins as HIV transcription inhibitors. , 2005, Bioorganic & medicinal chemistry letters.

[27]  C. Isel,et al.  Inhibition of Human Immunodeficiency Virus Type 1 Reverse Transcriptase, RNase H, and Integrase Activities by Hydroxytropolones , 2005, Antimicrobial Agents and Chemotherapy.

[28]  J. Chermann,et al.  Tri‐N‐Boc‐tetraazamacrocycle—Nucleoside Conjugates: Synthesis and Anti‐HIV Activities. , 2010 .

[29]  K. Ono,et al.  Differential inhibitory effects of some catechin derivatives on the activities of human immunodeficiency virus reverse transcriptase and cellular deoxyribonucleic and ribonucleic acid polymerases. , 1990, Biochemistry.

[30]  J. Paridaen,et al.  Anti-HIV drug development--an overview. , 2004, Current pharmaceutical design.

[31]  E. De Clercq,et al.  Novel Human Immunodeficiency Virus (HIV) Inhibitors That Have a Dual Mode of Anti-HIV Action , 2003, Antimicrobial Agents and Chemotherapy.

[32]  Y. Pommier,et al.  Cosalane analogues with enhanced potencies as inhibitors of HIV-1 protease and integrase. , 1995, Journal of medicinal chemistry.

[33]  C. Aiken,et al.  Bifunctional Anti-Human Immunodeficiency Virus Type 1 Small Molecules with Two Novel Mechanisms of Action , 2004, Antimicrobial Agents and Chemotherapy.

[34]  K. Danel,et al.  Synthesis and antiviral activity of new dimeric inhibitors against HIV-1. , 2008, Bioorganic & medicinal chemistry.

[35]  Design of small peptidomimetic HIV-1 protease inhibitors and prodrug forms , 1999, Letters in Peptide Science.

[36]  O. Weislow,et al.  Design, synthesis, and biological evaluation of cosalane, a novel anti-HIV agent which inhibits multiple features of virus reproduction. , 1994, Journal of medicinal chemistry.

[37]  Irwin D Kuntz,et al.  A novel mechanism for inhibition of HIV-1 reverse transcriptase. , 2002, Bioorganic chemistry.

[38]  K. Sano,et al.  Anti-Human Immunodeficiency Virus Activity of YK-FH312 (a Betulinic Acid Derivative), a Novel Compound Blocking Viral Maturation , 2001, Antimicrobial Agents and Chemotherapy.

[39]  M. Eisenstein,et al.  Neomycin B-arginine conjugate, a novel HIV-1 Tat antagonist: synthesis and anti-HIV activities. , 2001, Biochemistry.

[40]  Y. Matsushima,et al.  Prodrugs of vitamin E. 1. Preparation and enzymatic hydrolysis of aminoalkanecarboxylic acid esters of d-alpha-tocopherol. , 1995, Journal of pharmaceutical sciences.

[41]  E. De Clercq,et al.  Synthesis and anti-HIV activity of [AZT]-[TSAO-T] and [AZT]-[HEPT] dimers as potential multifunctional inhibitors of HIV-1 reverse transcriptase. , 1995, Journal of medicinal chemistry.

[42]  Richard Morphy,et al.  Designed Multiple Ligands. An Emerging Drug Discovery Paradigm , 2006 .

[43]  Tang,et al.  Carbonyl J Derivatives: A New Class of HIV-1 Integrase Inhibitors. , 2000, Bioorganic chemistry.

[44]  E. De Clercq,et al.  N-aminoimidazole derivatives inhibiting retroviral replication via a yet unidentified mode of action. , 2003, Journal of medicinal chemistry.

[45]  K. Sano,et al.  'Double-Drugs'--a new class of prodrug form of an HIV protease inhibitor conjugated with a reverse transcriptase inhibitor by a spontaneously cleavable linker. , 2000, Bioorganic & medicinal chemistry letters.

[46]  Richard Morphy,et al.  The physicochemical challenges of designing multiple ligands. , 2006, Journal of medicinal chemistry.

[47]  Robert H. Cichewicz,et al.  Chemistry, Biological Activity and Chemotherapeutic Potential of Betulinic Acid for the Prevention and Treatment of Cancer and HIV Infection , 2004 .

[48]  S. Lee-Huang,et al.  Discovery of small-molecule HIV-1 fusion and integrase inhibitors oleuropein and hydroxytyrosol: Part I. Integrase inhibition , 2007, Biochemical and Biophysical Research Communications.

[49]  S. Lee-Huang,et al.  Discovery of small-molecule HIV-1 fusion and integrase inhibitors oleuropein and hydroxytyrosol: part II. integrase inhibition. , 2007, Biochemical and biophysical research communications.

[50]  B. Rosenwirth,et al.  Inhibition of human immunodeficiency virus type 1 replication by SDZ NIM 811, a nonimmunosuppressive cyclosporine analog , 1994, Antimicrobial Agents and Chemotherapy.

[51]  S. Bartz,et al.  Inhibition of human immunodeficiency virus replication by nonimmunosuppressive analogs of cyclosporin A. , 1995, Proceedings of the National Academy of Sciences of the United States of America.

[52]  A. Hizi,et al.  Synthesis of naphthalenesulfonic acid small molecules as selective inhibitors of the DNA polymerase and ribonuclease H activities of HIV-1 reverse transcriptase. , 1994, Journal of medicinal chemistry.

[53]  H. Lou,et al.  New developments in diketo-containing inhibitors of HIV-1 integrase. , 2007, Mini reviews in medicinal chemistry.

[54]  T. Kenakin,et al.  Peptide, Peptidomimetic and Small‐molecule Drug Discovery Targeting HIV‐1 Host‐cell Attachment and Entry through gp120, gp41, CCR5 and CXCR4 † , 2006, Chemical biology & drug design.

[55]  P. Dumas,et al.  Aminoglycoside binding to the HIV-1 RNA dimerization initiation site: thermodynamics and effect on the kissing-loop to duplex conversion , 2007, Nucleic acids research.

[56]  E. De Clercq,et al.  A second target for the peptoid Tat/transactivation response element inhibitor CGP64222: inhibition of human immunodeficiency virus replication by blocking CXC-chemokine receptor 4-mediated virus entry. , 2000, Molecular pharmacology.

[57]  E. De Clercq Current lead natural products for the chemotherapy of human immunodeficiency virus (HIV) infection , 2000, Medicinal research reviews.

[58]  Richard Morphy,et al.  Fragments, network biology and designing multiple ligands. , 2007, Drug discovery today.

[59]  Y. Kiso,et al.  Synthesis and biological evaluation of prodrug-type anti-HIV agents: ester conjugates of carboxylic acid-containing dipeptide HIV protease inhibitors and a reverse transcriptase inhibitor. , 2001, Bioorganic & medicinal chemistry.

[60]  P. T. Jørgensen,et al.  Synthesis and evaluation of double-prodrugs against HIV. Conjugation of D4T with 6-benzyl-1-(ethoxymethyl)-5-isopropyluracil (MKC-442, emivirine)-type reverse transcriptase inhibitors via the SATE prodrug approach. , 2005, Journal of medicinal chemistry.

[61]  M. Andreola Closely related antiretroviral agents as inhibitors of two HIV-1 enzymes, ribonuclease H and integrase: "killing two birds with one stone". , 2004, Current pharmaceutical design.

[62]  R. Hunter,et al.  Current developments in the synthesis and biological activity of HIV-1 double-drug inhibitors. , 2007, Current medicinal chemistry.

[63]  Myriam Witvrouw,et al.  Synthesis of new covalently bound kappa-carrageenan-AZT conjugates with improved anti-HIV activities. , 2002, Journal of medicinal chemistry.

[64]  M. Uesugi,et al.  [Discovering high-affinity ligands for proteins: SAR by NMR]. , 2007, Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme.

[65]  S. Lee-Huang,et al.  Discovery of small-molecule HIV-1 fusion and integrase inhibitors oleuropein and hydroxytyrosol: Part I. Integrase inhibition , 2007, Biochemical and Biophysical Research Communications.

[66]  K. Harano,et al.  An allosteric drug, o,o'-bismyristoyl thiamine disulfide, suppresses HIV-1 replication through prevention of nuclear translocation of both HIV-1 Tat and NF-kappa B. , 1998, Biochemical and biophysical research communications.

[67]  Jennifer L. Knight,et al.  HIV-1 reverse transcriptase structure with RNase H inhibitor dihydroxy benzoyl naphthyl hydrazone bound at a novel site. , 2006, ACS chemical biology.

[68]  Y. Pommier,et al.  Novel bifunctional quinolonyl diketo acid derivatives as HIV-1 integrase inhibitors: design, synthesis, biological activities, and mechanism of action. , 2006, Journal of medicinal chemistry.

[69]  Ram Samudrala,et al.  Novel paradigms for drug discovery: computational multitarget screening. , 2008, Trends in pharmacological sciences.

[70]  R. Dayam,et al.  HIV-1 integrase inhibitors: 2005-2006 update. , 2008, Medicinal research reviews.

[71]  E. De Clercq,et al.  Inhibition of Human Immunodeficiency Virus by a New Class of Pyridine Oxide Derivatives , 2003, Antimicrobial Agents and Chemotherapy.

[72]  Li Huang,et al.  Synthesis and anti-HIV activity of bi-functional betulinic acid derivatives. , 2006, Bioorganic & medicinal chemistry.

[73]  Y. Pommier,et al.  Madurahydroxylactone Derivatives as Dual Inhibitors of Human Immunodeficiency Virus Type 1 Integrase and RNase H , 2007, Antimicrobial Agents and Chemotherapy.

[74]  Dominique Schols,et al.  Inhibition of Human Immunodeficiency Virus Replication by a Dual CCR5/CXCR4 Antagonist , 2004, Journal of Virology.

[75]  J. Turpin The next generation of HIV/AIDS drugs: novel and developmental antiHIV drugs and targets , 2003, Expert review of anti-infective therapy.

[76]  E. De Clercq,et al.  Synthesis and anti-HIV activity of cosalane analogues incorporating nitrogen in the linker chain. , 2000, Bioorganic & medicinal chemistry.

[77]  Zhengqiang Wang,et al.  Synthesis of pyrimidine and quinolone conjugates as a scaffold for dual inhibitors of HIV reverse transcriptase and integrase. , 2008, Bioorganic & medicinal chemistry letters.

[78]  Rolf Kaiser,et al.  Basics of the virology of HIV-1 and its replication. , 2005, Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology.

[79]  Li-he Zhang,et al.  Modifications of aminoglycoside antibiotics targeting RNA , 2007, Medicinal research reviews.

[80]  A. Kirn,et al.  Imidazo[1,5-b]Pyridazine-D4T Conjugates: Synthesis and Anti-Human Immunodeficiency Virus Evaluation , 1998, Antiviral chemistry & chemotherapy.

[81]  P. T. Jørgensen,et al.  Synthesis of novel N-1 (allyloxymethyl) analogues of 6-benzyl-1-(ethoxymethyl)-5-isopropyluracil (MKC-442, emivirine) with improved activity against HIV-1 and its mutants. , 2002, Journal of medicinal chemistry.

[82]  C. Salomon,et al.  Rationally designed dual inhibitors of HIV reverse transcriptase and integrase. , 2007, Journal of medicinal chemistry.

[83]  E. Clercq New developments in anti-HIV chemotherapy , 2001 .

[84]  E. Clercq New Approaches Toward anti-HIV Chemotherapy , 2005 .

[85]  P. Dumas,et al.  A structure-based approach for targeting the HIV-1 genomic RNA dimerization initiation site. , 2007, Biochimie.

[86]  L. Bedoya,et al.  Anti-HIV activity of stilbene-related heterocyclic compounds. , 2006, Bioorganic & medicinal chemistry letters.

[87]  A. Hay,et al.  Inhibition of HIV infection by flavanoids. , 1993, Antiviral research.

[88]  E. De Clercq,et al.  Bicyclams, a class of potent anti-HIV agents, are targeted at the HIV coreceptor fusin/CXCR-4. , 1997, Antiviral research.

[89]  M. Parniak,et al.  Inhibition of the ribonuclease H and DNA polymerase activities of HIV-1 reverse transcriptase by N-(4-tert-butylbenzoyl)-2-hydroxy-1-naphthaldehyde hydrazone. , 1997, Biochemistry.

[90]  A. Mitra,et al.  Binding of cosalane--a novel highly lipophilic anti-HIV agent--to albumin and glycoprotein. , 2001, Journal of pharmaceutical sciences.

[91]  V. Pande,et al.  Nuclear factor kappa B: a potential target for anti-HIV chemotherapy. , 2003, Current medicinal chemistry.

[92]  Zhengqiang Wang,et al.  Design and synthesis of dual inhibitors of HIV reverse transcriptase and integrase: introducing a diketoacid functionality into delavirdine. , 2008, Bioorganic & medicinal chemistry.

[93]  Jianping Ding,et al.  Review of HIV-1 reverse transcriptase three-dimensional structure : implications for drug design , 1993 .

[94]  C. Nguyen,et al.  Synthesis and evaluation of "AZT-HEPT", "AZT-pyridinone", and "ddC-HEPT" conjugates as inhibitors of HIV reverse transcriptase. , 2000, Journal of medicinal chemistry.

[95]  Marco Rusnati,et al.  Heparin-Mimicking Sulfonic Acid Polymers as Multitarget Inhibitors of Human Immunodeficiency Virus Type 1 Tat and gp120 Proteins , 2007, Antimicrobial Agents and Chemotherapy.

[96]  Erik De Clercq,et al.  The design of drugs for HIV and HCV , 2007, Nature Reviews Drug Discovery.

[97]  Li Huang,et al.  Molecular targets of anti-HIV-1 triterpenes. , 2002, Current drug targets. Infectious disorders.