Towards a comprehensive atlas of cortical connections in a primate brain: Mapping tracer injection studies of the common marmoset into a reference digital template
暂无分享,去创建一个
Piotr Majka | Partha P Mitra | Alexander Tolpygo | Tristan A. Chaplin | Daniel K Wójcik | Hsin-Hao Yu | Marcello G P Rosa | Tristan A Chaplin | P. Mitra | M. Rosa | D. Wójcik | P. Majka | Hsin-Hao Yu | T. Chaplin | A. Tolpygo
[1] Hongkui Zeng,et al. Neuroinformatics of the Allen Mouse Brain Connectivity Atlas. , 2015, Methods.
[2] Leo L. Lui,et al. Development of non‐phosphorylated neurofilament protein expression in neurones of the New World monkey dorsolateral frontal cortex , 2007, The European journal of neuroscience.
[3] H. Kuypers,et al. Diamidino yellow dihydrochloride (DY·2HCl); a new fluorescent retrograde neuronal tracer, which migrates only very slowly out of the cell , 2004, Experimental Brain Research.
[4] Partha P. Mitra,et al. Panoptic Neuroanatomy: Digital Microscopy of Whole Brains and Brain-Wide Circuit Mapping , 2013, Brain, Behavior and Evolution.
[5] Henry Kennedy,et al. Cortical High-Density Counterstream Architectures , 2013, Science.
[6] L. Heimer,et al. In vivo anterograde and retrograde axonal trnasport of the fluoresecent rhodamine-dextran-amine, Fluor-Ruby, within the CNS , 1990, Brain Research.
[7] Andreas K. Maier,et al. A Gauss-Seidel Iteration Scheme for Reference-Free 3-D Histological Image Reconstruction , 2015, IEEE Transactions on Medical Imaging.
[8] Michael Petrides,et al. Comprar The Marmoset Brain In Stereotaxic Coordinates | Hironobu Tokuno | 9780124158184 | Academic Press , 2012 .
[9] Marcello G P Rosa,et al. Quantitative analysis of the corticocortical projections to the middle temporal area in the marmoset monkey: evolutionary and functional implications. , 2006, Cerebral cortex.
[10] Nikola T. Markov,et al. A Weighted and Directed Interareal Connectivity Matrix for Macaque Cerebral Cortex , 2012, Cerebral cortex.
[11] Brian B. Avants,et al. Histology-derived volumetric annotation of the human hippocampal subfields in postmortem MRI , 2014, NeuroImage.
[12] Piotr Majka,et al. Possum—A Framework for Three-Dimensional Reconstruction of Brain Images from Serial Sections , 2015, Neuroinformatics.
[13] Kathleen J. Burman,et al. The cortical motor system of the marmoset monkey (Callithrix jacchus) , 2015, Neuroscience Research.
[14] H. Okano,et al. Comparative Anatomy of Marmoset and Mouse Cortex from Genomic Expression , 2012, The Journal of Neuroscience.
[15] Michael Petrides,et al. The marmoset brain in stereotaxic coordinates , 2012 .
[16] Larry W. Swanson,et al. Brain architecture management system , 2007, Neuroinformatics.
[17] Craig D. Hardman,et al. Stereotaxic and Chemoarchitectural Atlas of the Brain of the Common Marmoset (Callithrix Jacchus) , 2012 .
[18] Markus Diesmann,et al. CoCoMac 2.0 and the future of tract-tracing databases , 2012, Front. Neuroinform..
[19] Alan C. Evans,et al. BigBrain: An Ultrahigh-Resolution 3D Human Brain Model , 2013, Science.
[20] Daniel S. Reich,et al. Custom fit 3D-printed brain holders for comparison of histology with MRI in marmosets , 2016, Journal of Neuroscience Methods.
[21] P. Osten,et al. Mapping brain circuitry with a light microscope , 2013, Nature Methods.
[22] M. Young,et al. Advanced database methodology for the Collation of Connectivity data on the Macaque brain (CoCoMac). , 2001, Philosophical transactions of the Royal Society of London. Series B, Biological sciences.
[23] Ullrich Köthe,et al. Ilastik: Interactive learning and segmentation toolkit , 2011, 2011 IEEE International Symposium on Biomedical Imaging: From Nano to Macro.
[24] Carl-Fredrik Westin,et al. Comparison of fiber tracts derived from in-vivo DTI tractography with 3D histological neural tract tracer reconstruction on a macaque brain , 2007, NeuroImage.
[25] Arno Klein,et al. A reproducible evaluation of ANTs similarity metric performance in brain image registration , 2011, NeuroImage.
[26] Paul W. Frankland,et al. Whole-brain mapping of behaviourally induced neural activation in mice , 2015, Brain Structure and Function.
[27] Sophia Bakola,et al. Patterns of afferent input to the caudal and rostral areas of the dorsal premotor cortex (6DC and 6DR) in the marmoset monkey , 2014, The Journal of comparative neurology.
[28] Lauretta Passarelli,et al. Cortical Connectivity Suggests a Role in Limb Coordination for Macaque Area PE of the Superior Parietal Cortex , 2013, The Journal of Neuroscience.
[29] Tristan A. Chaplin,et al. A Conserved Pattern of Differential Expansion of Cortical Areas in Simian Primates , 2013, The Journal of Neuroscience.
[30] Chia-Chun Hung,et al. Functional Mapping of Face-Selective Regions in the Extrastriate Visual Cortex of the Marmoset , 2015, The Journal of Neuroscience.
[31] Atsushi Iriki,et al. Population-averaged standard template brain atlas for the common marmoset (Callithrix jacchus) , 2011, NeuroImage.
[32] Xia Li,et al. Accuracy of image registration between MRI and light microscopy in the ex vivo brain. , 2011, Magnetic resonance imaging.
[33] J. Kaas,et al. The Organization and Evolution of Dorsal Stream Multisensory Motor Pathways in Primates , 2011, Front. Neuroanat..
[34] Xiaoqin Wang,et al. The harmonic organization of auditory cortex , 2013, Front. Syst. Neurosci..
[35] Alexander S. Tolpygo,et al. High-Throughput Method of Whole-Brain Sectioning, Using the Tape-Transfer Technique , 2015, PloS one.
[36] M. Mallar Chakravarty,et al. An MRI based average macaque monkey stereotaxic atlas and space (MNI monkey space) , 2011, NeuroImage.
[37] I. Aharon,et al. Three‐dimensional mapping of cortical thickness using Laplace's Equation , 2000, Human brain mapping.
[38] Albert J. Vilella,et al. The Common Marmoset Genome Provides Insight into Primate Biology and Evolution , 2014, Nature Genetics.
[39] Claus C. Hilgetag,et al. Role of Mechanical Factors in the Morphology of the Primate Cerebral Cortex , 2006, PLoS Comput. Biol..
[40] Trevor W Robbins,et al. Forebrain connectivity of the prefrontal cortex in the marmoset monkey (Callithrix jacchus): An anterograde and retrograde tract‐tracing study , 2007, The Journal of comparative neurology.
[41] J Nissanov,et al. Cryosectioning distortion reduction using tape support , 2001, Microscopy research and technique.
[42] Yousef Al-Kofahi,et al. Associative image analysis: A method for automated quantification of 3D multi-parameter images of brain tissue , 2008, Journal of Neuroscience Methods.
[43] Lauretta Passarelli,et al. Cortical Connections of Area V6Av in the Macaque: A Visual-Input Node to the Eye/Hand Coordination System , 2011, The Journal of Neuroscience.
[44] T. Robbins,et al. Risk-Sensitive Decision-Making in Patients with Posterior Parietal and Ventromedial Prefrontal Cortex Injury , 2013, Cerebral cortex.
[45] P. Mitra,et al. Brain-mapping projects using the common marmoset , 2015, Neuroscience Research.
[46] C. Galletti,et al. Connections of the Dorsomedial Visual Area: Pathways for Early Integration of Dorsal and Ventral Streams in Extrastriate Cortex , 2009, The Journal of Neuroscience.
[47] N. Ayache,et al. Three-dimensional reconstruction of stained histological slices and 3D non-linear registration with in-vivo MRI for whole baboon brain , 2007, Journal of Neuroscience Methods.
[48] David A. Leopold,et al. Brains, Genes, and Primates , 2015, Neuron.
[49] Anne E Carpenter,et al. CellProfiler: image analysis software for identifying and quantifying cell phenotypes , 2006, Genome Biology.
[50] David R. Haynor,et al. Nonrigid multimodality image registration , 2001, SPIE Medical Imaging.
[51] Alexander Huk,et al. PLDAPS: A Hardware Architecture and Software Toolbox for Neurophysiology Requiring Complex Visual Stimuli and Online Behavioral Control , 2012, Front. Neuroinform..
[52] Allan R. Jones,et al. An anatomic gene expression atlas of the adult mouse brain , 2009, Nature Neuroscience.
[53] Marcello G P Rosa,et al. Brain maps, great and small: lessons from comparative studies of primate visual cortical organization , 2005, Philosophical Transactions of the Royal Society B: Biological Sciences.
[54] R. Rosenfeld. Nature , 2009, Otolaryngology--head and neck surgery : official journal of American Academy of Otolaryngology-Head and Neck Surgery.
[55] David A. Leopold,et al. The marmoset monkey as a model for visual neuroscience , 2015, Neuroscience Research.
[56] Jon H. Kaas,et al. The evolution of the complex sensory and motor systems of the human brain , 2008, Brain Research Bulletin.
[57] M. Gamberini,et al. Resolving the organization of the New World monkey third visual complex: The dorsal extrastriate cortex of the marmoset (Callithrix jacchus) , 2005, The Journal of comparative neurology.
[58] Grégoire Malandain,et al. Fusion of autoradiographs with an MR volume using 2-D and 3-D linear transformations , 2004, NeuroImage.
[59] H. Frahm,et al. New and revised data on volumes of brain structures in insectivores and primates. , 1981, Folia primatologica; international journal of primatology.
[60] Brian B. Avants,et al. Symmetric diffeomorphic image registration with cross-correlation: Evaluating automated labeling of elderly and neurodegenerative brain , 2008, Medical Image Anal..
[61] G. Johnson,et al. A Diffusion MRI Tractography Connectome of the Mouse Brain and Comparison with Neuronal Tracer Data , 2015, Cerebral cortex.
[62] Pierre-Louis Bazin,et al. Anatomically motivated modeling of cortical laminae , 2014, NeuroImage.
[63] William Schroeder,et al. The Visualization Toolkit: An Object-Oriented Approach to 3-D Graphics , 1997 .
[64] Hauke Bartsch,et al. Postmortem examination of patient H.M.’s brain based on histological sectioning and digital 3D reconstruction , 2014, Nature Communications.
[65] Sophia Bakola,et al. Cortical and thalamic projections to cytoarchitectural areas 6Va and 8C of the marmoset monkey: Connectionally distinct subdivisions of the lateral premotor cortex , 2015, The Journal of comparative neurology.
[66] A. Iriki,et al. Current models of the marmoset brain , 2015, Neuroscience Research.
[67] D. Leopold,et al. Anatomical accuracy of brain connections derived from diffusion MRI tractography is inherently limited , 2014, Proceedings of the National Academy of Sciences.
[68] Samuel G. Solomon,et al. A simpler primate brain: the visual system of the marmoset monkey , 2014, Front. Neural Circuits..
[69] John D. Newman,et al. A combined histological and MRI brain atlas of the common marmoset monkey, Callithrix jacchus , 2009, Brain Research Reviews.
[70] Katsuki Nakamura,et al. Stereotaxic Atlas of the Marmoset Brain , 2010 .
[71] Dominique Hasboun,et al. Combined Laplacian-equivolumic model for studying cortical lamination with ultra high field MRI (7 T) , 2015, 2015 IEEE 12th International Symposium on Biomedical Imaging (ISBI).
[72] H. Seung,et al. Serial two-photon tomography: an automated method for ex-vivo mouse brain imaging , 2011, Nature Methods.
[73] Jacopo Annese,et al. The importance of combining MRI and large-scale digital histology in neuroimaging studies of brain connectivity and disease , 2012, Front. Neuroinform..
[74] Kathleen J. Burman,et al. Architectural subdivisions of medial and orbital frontal cortices in the marmoset monkey (Callithrix jacchus) , 2009, The Journal of comparative neurology.
[75] Zhengyi Yang,et al. MRI-guided volume reconstruction of mouse brain from histological sections , 2012, Journal of Neuroscience Methods.
[76] F. Condé. Further studies on the use of the fluorescent tracers fast blue and diamidino yellow: Effective uptake area and cellular storage sites , 1987, Journal of Neuroscience Methods.
[77] Piotr Majka,et al. Common Atlas Format and 3D Brain Atlas Reconstructor: Infrastructure for Constructing 3D Brain Atlases , 2012, Neuroinformatics.
[78] D. Cyranoski. Marmoset model takes centre stage , 2009, Nature.
[79] Michela Gamberini,et al. Cytoarchitectonic subdivisions of the dorsolateral frontal cortex of the marmoset monkey (Callithrix jacchus), and their projections to dorsal visual areas , 2006, The Journal of comparative neurology.
[80] Arno Klein,et al. Evaluation of 14 nonlinear deformation algorithms applied to human brain MRI registration , 2009, NeuroImage.
[81] Tristan A. Chaplin,et al. Contrasting patterns of cortical input to architectural subdivisions of the area 8 complex: a retrograde tracing study in marmoset monkeys. , 2013, Cerebral cortex.
[82] D. Louis Collins,et al. Brain templates and atlases , 2012, NeuroImage.
[83] Lauretta Passarelli,et al. Cortical connections of parietal field PEc in the macaque: linking vision and somatic sensation for the control of limb action. , 2010, Cerebral cortex.
[84] David C. Van Essen,et al. Application of Information Technology: An Integrated Software Suite for Surface-based Analyses of Cerebral Cortex , 2001, J. Am. Medical Informatics Assoc..
[85] A. C. Cuello,et al. The brain of the common marmoset (Callithrix jacchus) a stereotaxic atlas H. Stephan,G. Baron &W. K. Schwerdtfeger. 1980. Springer-Verlag, Berlin. 5 figs., 3 tab., 73 plates. V 91 pages. Cloth DM 168,-; approx. US $94.10 , 1981, Neuroscience.
[86] Kowalski Jakub,et al. Mapping the marmoset monkey cortex and the construction of a multimodal digital atlas , 2013 .
[87] H. Okano,et al. Generation of transgenic non-human primates with germline transmission , 2009, Nature.
[88] H. Kennedy,et al. A Large-Scale Circuit Mechanism for Hierarchical Dynamical Processing in the Primate Cortex , 2015, Neuron.
[89] D. Bendor,et al. Neural coding of temporal information in auditory thalamus and cortex , 2008, Neuroscience.
[90] K. Deisseroth,et al. CLARITY for mapping the nervous system , 2013, Nature Methods.
[91] Hideyuki Okano,et al. Brain/MINDS: brain-mapping project in Japan , 2015, Philosophical Transactions of the Royal Society B: Biological Sciences.
[92] D. Bendor,et al. Neural coding of temporal information in auditory thalamus and cortex , 2008, Neuroscience.
[93] Guido Gerig,et al. User-guided 3D active contour segmentation of anatomical structures: Significantly improved efficiency and reliability , 2006, NeuroImage.
[94] Hsin-Hao Yu,et al. Cortical input to the frontal pole of the marmoset monkey. , 2011, Cerebral Cortex.
[95] Allan R. Jones,et al. A mesoscale connectome of the mouse brain , 2014, Nature.