Regulation of mean and noise of the in vivo kinetics of transcription under the control of the lac/ara‐1 promoter
暂无分享,去创建一个
Olli Yli-Harja | Meenakshisundaram Kandhavelu | Abhishekh Gupta | Jason Lloyd-Price | O. Yli-Harja | A. Ribeiro | J. Lloyd-Price | M. Kandhavelu | Abhishekh Gupta | Anantha-Barathi Muthukrishnan | Anantha-Barathi Muthukrishnan | Andre S. Ribeiro
[1] Paul J. Choi,et al. Quantifying E. coli Proteome and Transcriptome with Single-Molecule Sensitivity in Single Cells , 2010, Science.
[2] Henry Horng-Shing Lu,et al. Segmentation of cDNA microarray images by kernel density estimation , 2008, J. Biomed. Informatics.
[3] O. Sliusarenko,et al. Spatial organization of the flow of genetic information in bacteria , 2010, Nature.
[4] Ido Golding,et al. Decision making in living cells: lessons from a simple system. , 2011, Annual review of biophysics.
[5] J. Kondev,et al. Mechanism of transcriptional repression at a bacterial promoter by analysis of single molecules , 2011, The EMBO journal.
[6] M Kandhavelu,et al. Single-molecule dynamics of transcription of the lar promoter , 2012, Physical biology.
[7] D. Gillespie. A General Method for Numerically Simulating the Stochastic Time Evolution of Coupled Chemical Reactions , 1976 .
[8] Ido Golding,et al. RNA dynamics in live Escherichia coli cells. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[9] M. Capp,et al. Inhibition of Transcription Initiation buIacRepressor , 1995 .
[10] P. Dehaseth,et al. Mechanism of bacterial transcription initiation: RNA polymerase - promoter binding, isomerization to initiation-competent open complexes, and initiation of RNA synthesis. , 2011, Journal of molecular biology.
[11] Arkady B. Khodursky,et al. Global analysis of mRNA decay and abundance in Escherichia coli at single-gene resolution using two-color fluorescent DNA microarrays , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[12] Jeffrey W. Smith,et al. Stochastic Gene Expression in a Single Cell , 2022 .
[13] Julio Collado-Vides,et al. RegulonDB version 7.0: transcriptional regulation of Escherichia coli K-12 integrated within genetic sensory response units (Gensor Units) , 2010, Nucleic Acids Res..
[14] H. Bujard,et al. Independent and tight regulation of transcriptional units in Escherichia coli via the LacR/O, the TetR/O and AraC/I1-I2 regulatory elements. , 1997, Nucleic acids research.
[15] M. Record,et al. Inhibition of transcription initiation by lac repressor. , 1995, Journal of molecular biology.
[16] N. Otsu. A threshold selection method from gray level histograms , 1979 .
[17] M. Chamberlin,et al. Studies of RNA chain initiation by Escherichia coli RNA polymerase bound to T7 DNA. Direct analysis of the kinetics and extent of RNA chain initiation at T7 promoter A1. , 1979, The Journal of biological chemistry.
[18] Gürol M. Süel,et al. An excitable gene regulatory circuit induces transient cellular differentiation , 2006, Nature.
[19] S. Busby,et al. The regulation of bacterial transcription initiation , 2004, Nature Reviews Microbiology.
[20] W. McClure,et al. Kinetics of open complex formation between Escherichia coli RNA polymerase and the lac UV5 promoter. Evidence for a sequential mechanism involving three steps. , 1985, Biochemistry.
[21] William R. McClure,et al. Dual promoter control of the escherichia coli lactose operon , 1984, Cell.
[22] Antti Häkkinen,et al. In vivo kinetics of transcription initiation of the lar promoter in Escherichia coli. Evidence for a sequential mechanism with two rate-limiting steps , 2011, BMC Systems Biology.
[23] Steven M. Block,et al. Sequence-Resolved Detection of Pausing by Single RNA Polymerase Molecules , 2006, Cell.
[24] Olli Yli-Harja,et al. Probabilistic RNA partitioning generates transient increases in the normalized variance of RNA numbers in synchronized populations of Escherichia coli. , 2012, Molecular bioSystems.
[25] Antti Häkkinen,et al. Asymmetric Disposal of Individual Protein Aggregates in Escherichia coli, One Aggregate at a Time , 2012, Journal of bacteriology.
[26] W. McClure,et al. Mechanism and control of transcription initiation in prokaryotes. , 1985, Annual review of biochemistry.
[27] T. Elston,et al. Stochasticity in gene expression: from theories to phenotypes , 2005, Nature Reviews Genetics.
[28] V. Nagaraja,et al. Comparison of promoter-specific events during transcription initiation in mycobacteria. , 2010, Microbiology.
[29] Johan Paulsson,et al. Non-genetic heterogeneity from stochastic partitioning at cell division , 2011, Nature Genetics.
[30] Jerome T. Mettetal,et al. Stochastic switching as a survival strategy in fluctuating environments , 2008, Nature Genetics.
[31] E. Cox,et al. Real-Time Kinetics of Gene Activity in Individual Bacteria , 2005, Cell.
[32] W. McClure,et al. Rate-limiting steps in RNA chain initiation. , 1980, Proceedings of the National Academy of Sciences of the United States of America.
[33] Thomas D. Schmittgen,et al. Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method. , 2001, Methods.
[34] Antti Häkkinen,et al. Effects of the promoter open complex formation on gene expression dynamics. , 2010, Physical review. E, Statistical, nonlinear, and soft matter physics.
[35] J. Paulsson,et al. Effects of Molecular Memory and Bursting on Fluctuations in Gene Expression , 2008, Science.
[36] François Taddei,et al. Asymmetric segregation of protein aggregates is associated with cellular aging and rejuvenation , 2008, Proceedings of the National Academy of Sciences.
[37] H. Bujard,et al. Dissecting the functional program of Escherichia coli promoters: the combined mode of action of Lac repressor and AraC activator. , 2001, Nucleic acids research.