Synthetic biology of minimal living cells: primitive cell models and semi-synthetic cells

This article summarizes a contribution presented at the ESF 2009 Synthetic Biology focused on the concept of the minimal requirement for life and on the issue of constructive (synthetic) approaches in biological research. The attempts to define minimal life within the framework of autopoietic theory are firstly described, and a short report on the development of autopoietic chemical systems based on fatty acid vesicles, which are relevant as primitive cell models is given. These studies can be used as a starting point for the construction of more complex systems, firstly being inspired by possible origins of life scenarioes (and therefore by considering primitive functions), then by considering an approach based on modern biomacromolecular-encoded functions. At this aim, semi-synthetic minimal cells are defined as those man-made vesicle-based systems that are composed of the minimal number of genes, proteins, biomolecules and which can be defined as living. Recent achievements on minimal sized semi-synthetic cells are then discussed, and the kind of information obtained is recognized as being distinctively derived by a constructive approach. Synthetic biology is therefore a fundamental tool for gaining basic knowledge about biosystems, and it should not be confined at all to the engineering side.

[1]  H. Maturana,et al.  Autopoiesis and Cognition , 1980 .

[2]  Pasquale Stano,et al.  Approaches to semi-synthetic minimal cells: a review , 2005, Naturwissenschaften.

[3]  P. Stano 17 Self-Reproduction of Vesicles and Other Compartments: A Review , 2009 .

[4]  Pier Luigi Luisi,et al.  Insights into the self-reproduction of oleate vesicles , 2006 .

[5]  Daniel A. Fletcher,et al.  Biology under construction: in vitro reconstitution of cellular function , 2009, Nature Reviews Molecular Cell Biology.

[6]  Kenichi Yoshikawa,et al.  Gene Expression within Cell‐Sized Lipid Vesicles , 2003, Chembiochem : a European journal of chemical biology.

[7]  George M Church,et al.  Towards synthesis of a minimal cell , 2006, Molecular systems biology.

[8]  Irene A Chen,et al.  A kinetic study of the growth of fatty acid vesicles. , 2004, Biophysical journal.

[9]  Alberto Diaspro,et al.  Protein synthesis in liposomes with a minimal set of enzymes. , 2007, Biochemical and biophysical research communications.

[10]  D. Bartel,et al.  Synthesizing life : Paths to unforeseeable science & technology , 2001 .

[11]  Pier Luigi Luisi Chemical Aspects of Synthetic Biology , 2007 .

[12]  J W Szostak,et al.  Reconstructing the emergence of cellular life through the synthesis of model protocells. , 2009, Cold Spring Harbor symposia on quantitative biology.

[13]  P. Luisi,et al.  Autopoiesis with or without cognition: defining life at its edge , 2004, Journal of The Royal Society Interface.

[14]  K. Yoshikawa,et al.  Towards constructing synthetic cells: RNA/RNP evolution and cell-free translational systems in giant liposomes , 2007, 2007 International Symposium on Micro-NanoMechatronics and Human Science.

[15]  A. Moya,et al.  Determination of the Core of a Minimal Bacterial Gene Set , 2004, Microbiology and Molecular Biology Reviews.

[16]  H. Berg Cold Spring Harbor Symposia on Quantitative Biology.: Vol. LII. Evolution of Catalytic Functions. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, 1987, ISBN 0-87969-054-2, xix + 955 pp., US $150.00. , 1989 .

[17]  Vincent Noireaux,et al.  A vesicle bioreactor as a step toward an artificial cell assembly. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[18]  Pier Luigi Luisi,et al.  OPARIN'S REACTIONS REVISITED : ENZYMATIC SYNTHESIS OF POLY(ADENYLIC ACID) IN MICELLES AND SELF-REPRODUCING VESICLES , 1994 .

[19]  H. Maturana,et al.  Autopoiesis and Cognition : The Realization of the Living (Boston Studies in the Philosophy of Scie , 1980 .

[20]  David A. Weitz,et al.  Production of Unilamellar Vesicles Using an Inverted Emulsion , 2003 .

[21]  M Wakabayashi,et al.  Synthesis of functional protein in liposome. , 2001, Journal of bioscience and bioengineering.

[22]  Wim E Hennink,et al.  Optimization and quantification of protein synthesis inside liposomes , 2010, Journal of liposome research.

[23]  Kazufumi Hosoda,et al.  Quantitative study of the structure of multilamellar giant liposomes as a container of protein synthesis reaction. , 2008, Langmuir : the ACS journal of surfaces and colloids.

[24]  P. Walde,et al.  Kinetic studies of the interaction of fatty acids with phosphatidylcholine vesicles (liposomes). , 2006, Colloids and surfaces. B, Biointerfaces.

[25]  P. Luisi,et al.  Protein expression in liposomes. , 1999, Biochemical and biophysical research communications.

[26]  Pier Luigi Luisi,et al.  Autocatalytic self-replicating micelles as models for prebiotic structures , 1992, Nature.

[27]  Kazufumi Hosoda,et al.  Replication of Genetic Information with Self‐Encoded Replicase in Liposomes , 2008, ChemBioChem.

[28]  Antoine Danchin,et al.  Synthetic biology: discovering new worlds and new words , 2008, EMBO reports.

[29]  P. Walde Surfactant Assemblies and their Various Possible Roles for the Origin(S) of Life , 2006, Origins of Life and Evolution of Biospheres.

[30]  Pier Luigi Luisi,et al.  A Matrix Effect in Mixed Phospholipid/Fatty Acid Vesicle Formation , 1999 .

[31]  F. Varela,et al.  Self-replicating micelles — A chemical version of a minimal autopoietic system , 1989, Origins of life and evolution of the biosphere.

[32]  Pier Luigi Luisi,et al.  Growth and Transformation of Vesicles Studied by Ferritin Labeling and Cryotransmission Electron Microscopy , 2001 .

[33]  Petra Schwille,et al.  Synthetic biology of minimal systems , 2009, Critical reviews in biochemistry and molecular biology.

[34]  P. Luisi,et al.  Self-Reproduction of Micelles, Reverse Micelles, and Vesicles: Compartments Disclose a General Transformation Pattern , 2008 .

[35]  P. Luisi,et al.  Lipid vesicles as possible intermediates in the origin of life , 1999 .

[36]  K. Birdi,et al.  Handbook of Surface and Colloid Chemistry , 2002 .

[37]  D. Deamer,et al.  Chemistry and Physics of Primitive Membranes , 2006 .

[38]  Pier Luigi Luisi,et al.  Matrix Effect in the Size Distribution of Fatty Acid Vesicles , 1998 .

[39]  H. Morowitz Beginnings of Cellular Life: Metabolism Recapitulates Biogenesis , 1992 .

[40]  Pier Luigi Luisi,et al.  The Notion of a DNA Minimal Cell: A General Discourse and Some Guidelines for an Experimental Approach , 2002 .

[41]  Ying Zhang,et al.  Artificial cells: building bioinspired systems using small-scale biology. , 2008, Trends in biotechnology.

[42]  P. Luisi,et al.  The Use of Liposomes for Constructing Cell Models , 2002, Journal of biological physics.

[43]  A. Pohorille,et al.  Artificial cells: prospects for biotechnology. , 2002, Trends in biotechnology.

[44]  P. Luisi,et al.  Enzymatic RNA replication in self-reproducing vesicles: an approach to a minimal cell. , 1995, Biochemical and biophysical research communications.

[45]  Pasquale Stano,et al.  Vesicle behavior: in search of explanations. , 2008, The journal of physical chemistry. B.

[46]  Hirohide Saito,et al.  Time‐Resolved Tracking of a Minimum Gene Expression System Reconstituted in Giant Liposomes , 2009, Chembiochem : a European journal of chemical biology.

[47]  Pasquale Stano,et al.  The Minimal Size of Liposome‐Based Model Cells Brings about a Remarkably Enhanced Entrapment and Protein Synthesis , 2009, Chembiochem : a European journal of chemical biology.

[48]  Takuya Ueda,et al.  Cell-free translation reconstituted with purified components , 2001, Nature Biotechnology.

[49]  Size Limits of Very Small Microorganisms , 2004 .

[50]  Tetsuya Yomo,et al.  Expression of a cascading genetic network within liposomes , 2004, FEBS letters.

[51]  D. Bartel,et al.  Synthesizing life , 2001, Nature.

[52]  Fabio Mavelli,et al.  Cooperative Micelle Binding and Matrix Effect in Oleate Vesicle Formation , 2003 .

[53]  P. Luisi,et al.  Autopoietic Self-Reproduction of Fatty Acid Vesicles , 1994 .

[54]  Robert Shapiro,et al.  A simpler origin for life. , 2007, Scientific American.

[55]  Neva Ciftcioglu,et al.  Nanobacteria: An alternative mechanism for pathogenic intra- and extracellular calcification and stone formation , 1998 .

[56]  Yutetsu Kuruma,et al.  A synthetic biology approach to the construction of membrane proteins in semi-synthetic minimal cells. , 2009, Biochimica et biophysica acta.