Phenotypic transition maps of 3D breast acini obtained by imaging-guided agent-based modeling.
暂无分享,去创建一个
Sylvain V Costes | Sabine Becker-Weimann | Heiko Enderling | Aris Polyzos | S. Becker-Weimann | Jonathan Tang | H. Enderling | S. Costes | Aris A Polyzos | C. Pham | Chen-Yi Chen | Jonathan Tang | Christopher Pham | Chen-Yi Chen
[1] Randall W. King,et al. A Nonapoptotic Cell Death Process, Entosis, that Occurs by Cell-in-Cell Invasion , 2007, Cell.
[2] C. Anthony Hunt,et al. Simulating Properties of In Vitro Epithelial Cell Morphogenesis , 2006, PLoS Comput. Biol..
[3] M J Bissell,et al. Functional differentiation and alveolar morphogenesis of primary mammary cultures on reconstituted basement membrane. , 1989, Development.
[4] John Wambaugh,et al. Simulating Microdosimetry in a Virtual Hepatic Lobule , 2010, PLoS Comput. Biol..
[5] Jayanta Debnath,et al. Morphogenesis and oncogenesis of MCF-10A mammary epithelial acini grown in three-dimensional basement membrane cultures. , 2003, Methods.
[6] J. Galle,et al. From single cells to tissue architecture—a bottom-up approach to modelling the spatio-temporal organisation of complex multi-cellular systems , 2009, Journal of mathematical biology.
[7] Jayanta Debnath,et al. The Role of Apoptosis in Creating and Maintaining Luminal Space within Normal and Oncogene-Expressing Mammary Acini , 2002, Cell.
[8] Sunwoo Park,et al. A computational approach to resolve cell level contributions to early glandular epithelial cancer progression , 2009, BMC Systems Biology.
[9] M. Chaplain,et al. Paradoxical dependencies of tumor dormancy and progression on basic cell kinetics. , 2009, Cancer research.
[10] P. Maini,et al. A cellular automaton model for tumour growth in inhomogeneous environment. , 2003, Journal of theoretical biology.
[11] C Anthony Hunt,et al. Dynamics of in silico leukocyte rolling, activation, and adhesion , 2007, BMC Systems Biology.
[12] J. Debnath,et al. Akt activation disrupts mammary acinar architecture and enhances proliferation in an mTOR-dependent manner , 2003, The Journal of cell biology.
[13] M. Bissell,et al. Ionizing radiation predisposes nonmalignant human mammary epithelial cells to undergo transforming growth factor beta induced epithelial to mesenchymal transition. , 2007, Cancer research.
[14] M J Bissell,et al. The development of a functionally relevant cell culture model of progressive human breast cancer. , 1995, Seminars in cancer biology.
[15] James L. Chen,et al. Image-Based Modeling Reveals Dynamic Redistribution of DNA Damage into Nuclear Sub-Domains , 2007, PLoS Comput. Biol..
[16] Sean H. J. Kim,et al. At the Biological Modeling and Simulation Frontier , 2009, Pharmaceutical Research.
[17] Tai Ning Lam,et al. Discovering Plausible Mechanistic Details of Hepatic Drug Interactions , 2009, Drug Metabolism and Disposition.
[18] Gyan Bhanot,et al. A 2D mechanistic model of breast ductal carcinoma in situ (DCIS) morphology and progression. , 2010, Journal of theoretical biology.
[19] Hartmut Dickhaus,et al. Modeling multi-cellular behavior in epidermal tissue homeostasis via finite state machines in multi-agent systems , 2009, Bioinform..
[20] Zhihui Wang,et al. Cross-scale, cross-pathway evaluation using an agent-based non-small cell lung cancer model , 2009, Bioinform..
[21] A. Anderson,et al. An evolutionary hybrid cellular automaton model of solid tumour growth. , 2007, Journal of theoretical biology.
[22] Bahram Parvin,et al. Linking Changes in Epithelial Morphogenesis to Cancer Mutations Using Computational Modeling , 2010, PLoS Comput. Biol..
[23] Shayn M. Peirce,et al. Multi-cell Agent-based Simulation of the Microvasculature to Study the Dynamics of Circulating Inflammatory Cell Trafficking , 2007, Annals of Biomedical Engineering.
[24] David Harel,et al. Four-dimensional realistic modeling of pancreatic organogenesis , 2008, Proceedings of the National Academy of Sciences.
[25] Glen E. P. Ropella,et al. Tracing Multiscale Mechanisms of Drug Disposition in Normal and Diseased Livers , 2010, Journal of Pharmacology and Experimental Therapeutics.
[26] C. Anthony Hunt,et al. A Computational Approach to Understand In Vitro Alveolar Morphogenesis , 2009, PloS one.
[27] Z. Werb,et al. Suppression of ICE and apoptosis in mammary epithelial cells by extracellular matrix , 1995, Science.
[28] M. Barcellos-Hoff,et al. Intensity‐based signal separation algorithm for accurate quantification of clustered centrosomes in tissue sections , 2006, Microscopy research and technique.
[29] Gilles Clermont,et al. A Patient-Specific in silico Model of Inflammation and Healing Tested in Acute Vocal Fold Injury , 2008, PloS one.
[30] Phil McMinn,et al. Agent Based Modelling Helps in Understanding the Rules by Which Fibroblasts Support Keratinocyte Colony Formation , 2008, PloS one.
[31] E. Coucouvanis,et al. Signals for death and survival: A two-step mechanism for cavitation in the vertebrate embryo , 1995, Cell.
[32] Ignacio Ramis-Conde,et al. Multi-scale modelling of cancer cell intravasation: the role of cadherins in metastasis , 2009, Physical biology.
[33] M. Bissell,et al. The Influence of Extracellular Matrix on Gene Expression: Is Structure the Message? , 1987, Journal of Cell Science.
[34] K. Rejniak. An immersed boundary framework for modelling the growth of individual cells: an application to the early tumour development. , 2007, Journal of theoretical biology.
[35] J. Sturgis,et al. Factors necessary to produce basoapical polarity in human glandular epithelium formed in conventional and high-throughput three-dimensional culture: example of the breast epithelium , 2009, BMC Biology.
[36] A. Deutsch,et al. Studying the emergence of invasiveness in tumours using game theory , 2008, 0810.4724.
[37] A. Anderson,et al. A Computational Study of the Development of Epithelial Acini: I. Sufficient Conditions for the Formation of a Hollow Structure , 2008, Bulletin of mathematical biology.
[38] Shayn M. Peirce,et al. Agent-Based Model of Therapeutic Adipose-Derived Stromal Cell Trafficking during Ischemia Predicts Ability To Roll on P-Selectin , 2009, PLoS Comput. Biol..
[39] Joe W Gray,et al. Beta1 integrin inhibitory antibody induces apoptosis of breast cancer cells, inhibits growth, and distinguishes malignant from normal phenotype in three dimensional cultures and in vivo. , 2006, Cancer research.
[40] Alexander R. A. Anderson,et al. Dependence of invadopodia function on collagen fiber spacing and cross-linking: computational modeling and experimental evidence. , 2008, Biophysical journal.
[41] M. Bissell,et al. Interaction with basement membrane serves to rapidly distinguish growth and differentiation pattern of normal and malignant human breast epithelial cells. , 1992, Proceedings of the National Academy of Sciences of the United States of America.
[42] M. Piotrowska,et al. A quantitative cellular automaton model of in vitro multicellular spheroid tumour growth. , 2009, Journal of theoretical biology.
[43] Andreas Deutsch,et al. Prediction of traveling front behavior in a lattice-gas cellular automaton model for tumor invasion , 2010, Comput. Math. Appl..
[44] M. Bissell,et al. Cytodifferentiation of mouse mammary epithelial cells cultured on a reconstituted basement membrane reveals striking similarities to development in vivo. , 1991, Journal of cell science.
[45] John Neu,et al. Accordion waves in Myxococcus xanthus , 2006, Proceedings of the National Academy of Sciences of the United States of America.
[46] M. Reginato,et al. Illuminating the Center: Mechanisms Regulating Lumen Formation and Maintenance in Mammary Morphogenesis , 2006, Journal of Mammary Gland Biology and Neoplasia.
[47] Aleksander S. Popel,et al. Elongation, proliferation & migration differentiate endothelial cell phenotypes and determine capillary sprouting , 2009, BMC Systems Biology.
[48] Mark J. Miller,et al. Characterizing the Dynamics of CD4+ T Cell Priming within a Lymph Node , 2010, The Journal of Immunology.
[49] A. Anderson,et al. A Computational Study of the Development of Epithelial Acini: II. Necessary Conditions for Structure and Lumen Stability , 2008, Bulletin of mathematical biology.
[50] T. Skalak,et al. The FASEB Journal express article 10.1096/fj.03-0933fje. Published online February 6, 2004. Multicellular simulation predicts microvascular patterning and in silico tissue assembly , 2022 .
[51] C. Anthony Hunt,et al. Identifying the Rules of Engagement Enabling Leukocyte Rolling, Activation, and Adhesion , 2010, PLoS Comput. Biol..